PDB Chemical Component BRU

Ideal Model

Chemical Description

Name 5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
Formula C9 H12 Br N2 O8 P
Formal charge 0
Molecular weight 387.078 g/mol
Component type DNA LINKING
Nonstandard Parent Id DU

Chemical features

Atom count 33
Chiral atom count 3
Chiral atoms C1' C3' C4'
Observed leaving atoms OP3 HO3'
Bond count 34
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 5-bromo-2'-deoxyuridine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-5-(5-bromo-2,4-dioxo-pyrimidin-1-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C=C(Br)C(=O)NC2=O
SMILES (CACTVS) O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)N2C=C(Br)C(=O)NC2=O
Stereo SMILES (OpenEye) C1[C@@H]([C@H](O[C@H]1N2C=C(C(=O)NC2=O)Br)COP(=O)(O)O)O
InChI descriptor InChI=1S/C9H12BrN2O8P/c10-4-2-12(9(15)11-8(4)14)7-1-5(13)6(20-7)3-19-21(16,17)18/h2,5-7,13H,1,3H2,(H,11,14,15)(H2,16,17,18)/t5-,6+,7+/m0/s1
InChIKey descriptor LHLHVDBXXZVYJT-RRKCRQDMSA-N

Status Information

Last modified 2011-06-04
Created 1999-07-08
Release status REL
Replaces UBR
Model PDB code 1A35
Processing site EBI