PDB Chemical Component BRU
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for BRU
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C2 |
1.379 |
1.344 |
| N1 |
C6 |
1.381 |
1.369 |
| N1 |
C1' |
1.471 |
1.465 |
| C2 |
N3 |
1.369 |
1.346 |
| C2 |
O2 |
1.229 |
1.216 |
| N3 |
C4 |
1.376 |
1.349 |
| N3 |
HN3 |
1.019 |
0.970 |
| C4 |
C5 |
1.458 |
1.416 |
| C4 |
O4 |
1.227 |
1.218 |
| C5 |
C6 |
1.340 |
1.350 |
| C5 |
BR |
2.096 |
1.890 |
| C6 |
H6 |
1.102 |
1.080 |
| C1' |
C2' |
1.517 |
1.543 |
| C1' |
O4' |
1.419 |
1.444 |
| C1' |
H1' |
1.115 |
1.090 |
| C2' |
C3' |
1.520 |
1.546 |
| C2' |
H2' |
1.114 |
1.090 |
| C2' |
H2'' |
1.114 |
1.090 |
| C3' |
C4' |
1.526 |
1.545 |
| C3' |
O3' |
1.415 |
1.428 |
| C3' |
H3' |
1.114 |
1.089 |
| C4' |
O4' |
1.446 |
1.446 |
| C4' |
C5' |
1.504 |
1.530 |
| C4' |
H4' |
1.116 |
1.090 |
| O3' |
HO3' |
0.950 |
0.967 |
| C5' |
O5' |
1.433 |
1.429 |
| C5' |
H5' |
1.116 |
1.090 |
| C5' |
H5'' |
1.115 |
1.089 |
| O5' |
P |
1.586 |
1.610 |
| P |
OP1 |
1.497 |
1.480 |
| P |
OP2 |
1.503 |
1.610 |
| P |
OP3 |
1.600 |
1.611 |
| OP2 |
HOP2 |
0.949 |
0.967 |
| OP3 |
HOP3 |
0.949 |
0.967 |
Bond Angles for BRU
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C6 |
121.5 |
120.6 |
| C2 |
N1 |
C1' |
117.2 |
119.7 |
| N1 |
C2 |
N3 |
114.6 |
121.0 |
| N1 |
C2 |
O2 |
123.1 |
119.6 |
| C6 |
N1 |
C1' |
121.3 |
119.7 |
| N1 |
C6 |
C5 |
123.3 |
119.7 |
| N1 |
C6 |
H6 |
119.9 |
120.2 |
| N1 |
C1' |
C2' |
116.1 |
110.4 |
| N1 |
C1' |
O4' |
107.8 |
110.4 |
| N1 |
C1' |
H1' |
104.9 |
110.3 |
| N3 |
C2 |
O2 |
122.3 |
119.4 |
| C2 |
N3 |
C4 |
127.3 |
120.2 |
| C2 |
N3 |
HN3 |
116.0 |
119.9 |
| C4 |
N3 |
HN3 |
116.7 |
119.9 |
| N3 |
C4 |
C5 |
115.3 |
119.4 |
| N3 |
C4 |
O4 |
119.6 |
120.3 |
| C5 |
C4 |
O4 |
125.0 |
120.3 |
| C4 |
C5 |
C6 |
117.8 |
119.1 |
| C4 |
C5 |
BR |
119.1 |
120.4 |
| C6 |
C5 |
BR |
123.1 |
120.5 |
| C5 |
C6 |
H6 |
116.8 |
120.1 |
| C2' |
C1' |
O4' |
105.4 |
104.8 |
| C2' |
C1' |
H1' |
107.4 |
110.4 |
| C1' |
C2' |
C3' |
101.0 |
104.1 |
| C1' |
C2' |
H2' |
115.4 |
110.6 |
| C1' |
C2' |
H2'' |
115.4 |
110.6 |
| O4' |
C1' |
H1' |
115.6 |
110.4 |
| C1' |
O4' |
C4' |
109.3 |
105.3 |
| C3' |
C2' |
H2' |
115.4 |
110.4 |
| C3' |
C2' |
H2'' |
115.5 |
110.4 |
| C2' |
C3' |
C4' |
103.4 |
104.1 |
| C2' |
C3' |
O3' |
110.7 |
110.5 |
| C2' |
C3' |
H3' |
112.1 |
110.5 |
| H2' |
C2' |
H2'' |
95.0 |
110.6 |
| C4' |
C3' |
O3' |
107.9 |
110.5 |
| C4' |
C3' |
H3' |
114.7 |
110.5 |
| C3' |
C4' |
O4' |
106.1 |
104.7 |
| C3' |
C4' |
C5' |
112.4 |
110.6 |
| C3' |
C4' |
H4' |
110.2 |
110.3 |
| O3' |
C3' |
H3' |
108.0 |
110.5 |
| C3' |
O3' |
HO3' |
110.7 |
106.8 |
| O4' |
C4' |
C5' |
110.5 |
110.4 |
| O4' |
C4' |
H4' |
112.0 |
110.4 |
| C5' |
C4' |
H4' |
105.7 |
110.4 |
| C4' |
C5' |
O5' |
109.4 |
109.4 |
| C4' |
C5' |
H5' |
112.2 |
109.5 |
| C4' |
C5' |
H5'' |
112.2 |
109.5 |
| O5' |
C5' |
H5' |
112.3 |
109.4 |
| O5' |
C5' |
H5'' |
112.2 |
109.4 |
| C5' |
O5' |
P |
119.8 |
106.8 |
| H5' |
C5' |
H5'' |
98.2 |
109.5 |
| O5' |
P |
OP1 |
107.4 |
109.5 |
| O5' |
P |
OP2 |
109.2 |
109.5 |
| O5' |
P |
OP3 |
101.8 |
109.5 |
| OP1 |
P |
OP2 |
120.2 |
109.5 |
| OP1 |
P |
OP3 |
106.7 |
109.4 |
| OP2 |
P |
OP3 |
110.0 |
109.5 |
| P |
OP2 |
HOP2 |
109.2 |
106.7 |
| P |
OP3 |
HOP3 |
101.8 |
106.7 |
Torsion Angles for BRU
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
N1 |
C2 |
C1' |
181.2 |
179.8 |
| C2 |
N1 |
C6 |
C5 |
2.4 |
0.3 |
| C2 |
N1 |
C6 |
H6 |
182.4 |
180.2 |
| C2 |
N1 |
C1' |
C2' |
134.3 |
299.7 |
| C2 |
N1 |
C1' |
O4' |
252.3 |
55.2 |
| C2 |
N1 |
C1' |
H1' |
16.0 |
177.5 |
| N3 |
C2 |
N1 |
O2 |
180.4 |
179.5 |
| N1 |
C2 |
N3 |
C4 |
360.0 |
0.5 |
| N1 |
C2 |
N3 |
HN3 |
180.0 |
180.2 |
| C2 |
N1 |
C6 |
C1' |
178.7 |
180.2 |
| C6 |
N1 |
C2 |
N3 |
358.1 |
359.5 |
| C6 |
N1 |
C2 |
O2 |
177.7 |
180.0 |
| C6 |
N1 |
C1' |
C2' |
313.1 |
120.0 |
| C6 |
N1 |
C1' |
O4' |
71.1 |
235.4 |
| C6 |
N1 |
C1' |
H1' |
194.8 |
357.7 |
| C4 |
C5 |
C6 |
N1 |
359.1 |
359.9 |
| N1 |
C6 |
C5 |
BR |
178.5 |
180.0 |
| C5 |
C6 |
N1 |
H6 |
180.0 |
180.2 |
| C2 |
N1 |
C1' |
C6 |
181.2 |
179.8 |
| C1' |
N1 |
C2 |
N3 |
176.9 |
179.7 |
| C1' |
N1 |
C2 |
O2 |
356.5 |
0.2 |
| C1' |
N1 |
C6 |
C5 |
183.7 |
180.1 |
| C1' |
N1 |
C6 |
H6 |
3.6 |
359.9 |
| C2' |
C1' |
N1 |
O4' |
242.1 |
244.5 |
| C2' |
C1' |
N1 |
H1' |
118.3 |
122.2 |
| N1 |
C1' |
C2' |
C3' |
157.0 |
142.9 |
| N1 |
C1' |
C2' |
H2' |
282.2 |
24.4 |
| N1 |
C1' |
C2' |
H2'' |
31.8 |
261.5 |
| O4' |
C1' |
N1 |
H1' |
236.2 |
237.7 |
| N1 |
C1' |
O4' |
C4' |
209.2 |
200.7 |
| N3 |
C2 |
N1 |
C6 |
358.1 |
359.5 |
| N3 |
C2 |
N1 |
C1' |
176.9 |
179.7 |
| N1 |
C2 |
N3 |
O2 |
179.6 |
180.5 |
| C4 |
N3 |
C2 |
HN3 |
180.0 |
180.3 |
| C2 |
N3 |
C4 |
C5 |
1.4 |
359.6 |
| C2 |
N3 |
C4 |
O4 |
182.8 |
179.7 |
| O2 |
C2 |
N1 |
C6 |
177.7 |
180.0 |
| O2 |
C2 |
N1 |
C1' |
356.5 |
0.2 |
| N1 |
C2 |
O2 |
N3 |
180.5 |
179.5 |
| O2 |
C2 |
N3 |
C4 |
180.4 |
180.0 |
| O2 |
C2 |
N3 |
HN3 |
0.4 |
359.8 |
| C4 |
N3 |
C2 |
O2 |
180.4 |
180.0 |
| C2 |
N3 |
C4 |
HN3 |
180.0 |
179.7 |
| C5 |
C4 |
N3 |
O4 |
178.5 |
179.9 |
| N3 |
C4 |
C5 |
C6 |
359.1 |
0.2 |
| N3 |
C4 |
C5 |
BR |
179.7 |
180.0 |
| HN3 |
N3 |
C2 |
O2 |
0.4 |
359.8 |
| C2 |
N3 |
HN3 |
C4 |
180.0 |
180.3 |
| HN3 |
N3 |
C4 |
C5 |
181.3 |
179.9 |
| HN3 |
N3 |
C4 |
O4 |
2.8 |
0.0 |
| N1 |
C6 |
C5 |
C4 |
359.1 |
359.9 |
| C5 |
C4 |
N3 |
HN3 |
181.3 |
179.9 |
| N3 |
C4 |
C5 |
O4 |
181.5 |
180.1 |
| C6 |
C5 |
C4 |
BR |
179.5 |
180.2 |
| C4 |
C5 |
C6 |
H6 |
179.1 |
180.0 |
| O4 |
C4 |
N3 |
HN3 |
2.8 |
0.0 |
| N3 |
C4 |
O4 |
C5 |
178.4 |
179.9 |
| O4 |
C4 |
C5 |
C6 |
177.6 |
180.1 |
| O4 |
C4 |
C5 |
BR |
358.1 |
359.9 |
| C5 |
C6 |
N1 |
C1' |
183.7 |
180.1 |
| N1 |
C6 |
C5 |
H6 |
180.0 |
179.8 |
| C6 |
C5 |
C4 |
O4 |
177.6 |
180.1 |
| C4 |
C5 |
C6 |
BR |
180.5 |
179.8 |
| BR |
C5 |
C4 |
O4 |
358.1 |
359.9 |
| C4 |
C5 |
BR |
C6 |
179.4 |
180.2 |
| BR |
C5 |
C6 |
H6 |
358.6 |
0.2 |
| H6 |
C6 |
N1 |
C1' |
3.6 |
359.9 |
| N1 |
C6 |
H6 |
C5 |
180.0 |
180.2 |
| H6 |
C6 |
C5 |
BR |
358.6 |
0.2 |
| N1 |
C1' |
C2' |
O4' |
119.2 |
118.9 |
| N1 |
C1' |
C2' |
H1' |
243.0 |
237.8 |
| O4' |
C1' |
C2' |
H1' |
123.8 |
118.9 |
| C2' |
C1' |
O4' |
C4' |
333.8 |
319.5 |
| C3' |
C2' |
C1' |
H2' |
234.8 |
118.5 |
| C3' |
C2' |
C1' |
H2'' |
125.3 |
241.4 |
| C1' |
C2' |
C3' |
C4' |
325.3 |
359.9 |
| C1' |
C2' |
C3' |
O3' |
80.6 |
118.6 |
| C1' |
C2' |
C3' |
H3' |
201.2 |
241.3 |
| H2' |
C2' |
C1' |
H2'' |
250.5 |
122.8 |
| N1 |
C1' |
O4' |
C2' |
235.4 |
241.1 |
| N1 |
C1' |
O4' |
H1' |
117.0 |
122.3 |
| C2' |
C1' |
O4' |
H1' |
241.6 |
241.1 |
| O4' |
C1' |
C2' |
C3' |
37.8 |
24.0 |
| O4' |
C1' |
C2' |
H2' |
163.0 |
265.5 |
| O4' |
C1' |
C2' |
H2'' |
272.5 |
142.6 |
| C3' |
C4' |
O4' |
C1' |
3.3 |
40.4 |
| C1' |
O4' |
C4' |
C5' |
125.5 |
159.4 |
| C1' |
O4' |
C4' |
H4' |
243.1 |
281.7 |
| N1 |
C1' |
H1' |
C2' |
124.1 |
122.2 |
| N1 |
C1' |
H1' |
O4' |
241.4 |
237.7 |
| C2' |
C1' |
H1' |
O4' |
117.3 |
115.4 |
| H1' |
C1' |
C2' |
C3' |
274.0 |
265.1 |
| H1' |
C1' |
C2' |
H2' |
39.2 |
146.6 |
| H1' |
C1' |
C2' |
H2'' |
148.7 |
23.7 |
| H1' |
C1' |
O4' |
C4' |
92.2 |
78.4 |
| C3' |
C2' |
C1' |
O4' |
37.8 |
24.0 |
| C3' |
C2' |
C1' |
H1' |
274.0 |
265.1 |
| C1' |
C2' |
C3' |
H2' |
125.2 |
241.4 |
| C1' |
C2' |
C3' |
H2'' |
234.7 |
118.7 |
| H2' |
C2' |
C3' |
H2'' |
109.5 |
237.4 |
| C4' |
C3' |
C2' |
O3' |
244.7 |
241.3 |
| C4' |
C3' |
C2' |
H3' |
124.1 |
118.7 |
| C2' |
C3' |
C4' |
O4' |
20.5 |
336.2 |
| C2' |
C3' |
C4' |
C5' |
259.6 |
217.3 |
| C2' |
C3' |
C4' |
H4' |
142.0 |
94.9 |
| O3' |
C3' |
C2' |
H3' |
239.4 |
237.4 |
| C2' |
C3' |
O3' |
HO3' |
180.1 |
63.4 |
| H2' |
C2' |
C1' |
O4' |
163.0 |
265.5 |
| H2' |
C2' |
C1' |
H1' |
39.2 |
146.6 |
| C1' |
C2' |
H2' |
C3' |
242.6 |
114.6 |
| C1' |
C2' |
H2' |
H2'' |
121.3 |
237.1 |
| C3' |
C2' |
H2' |
H2'' |
238.7 |
122.5 |
| H2' |
C2' |
C3' |
C4' |
200.1 |
118.6 |
| H2' |
C2' |
C3' |
O3' |
315.4 |
237.3 |
| H2' |
C2' |
C3' |
H3' |
76.0 |
359.9 |
| H2'' |
C2' |
C1' |
O4' |
272.5 |
142.6 |
| H2'' |
C2' |
C1' |
H1' |
148.7 |
23.7 |
| C1' |
C2' |
H2'' |
C3' |
117.4 |
245.3 |
| C1' |
C2' |
H2'' |
H2' |
238.7 |
122.8 |
| C3' |
C2' |
H2'' |
H2' |
121.3 |
237.5 |
| H2'' |
C2' |
C3' |
C4' |
90.6 |
241.2 |
| H2'' |
C2' |
C3' |
O3' |
205.9 |
359.9 |
| H2'' |
C2' |
C3' |
H3' |
326.5 |
122.5 |
| C1' |
O4' |
C4' |
C3' |
3.3 |
40.4 |
| C4' |
C3' |
C2' |
H2' |
200.1 |
118.6 |
| C4' |
C3' |
C2' |
H2'' |
90.6 |
241.2 |
| C2' |
C3' |
C4' |
O3' |
117.3 |
118.7 |
| C2' |
C3' |
C4' |
H3' |
237.6 |
241.3 |
| O3' |
C3' |
C4' |
H3' |
120.3 |
122.6 |
| C4' |
C3' |
O3' |
HO3' |
292.5 |
178.1 |
| O4' |
C4' |
C3' |
C5' |
120.9 |
118.9 |
| O4' |
C4' |
C3' |
H4' |
238.5 |
241.3 |
| C5' |
C4' |
C3' |
H4' |
117.6 |
122.3 |
| C3' |
C4' |
C5' |
O5' |
38.8 |
176.9 |
| C3' |
C4' |
C5' |
H5' |
164.1 |
296.9 |
| C3' |
C4' |
C5' |
H5'' |
273.5 |
57.0 |
| O3' |
C3' |
C2' |
H2' |
315.4 |
237.3 |
| O3' |
C3' |
C2' |
H2'' |
205.9 |
359.9 |
| C2' |
C3' |
O3' |
C4' |
247.5 |
245.3 |
| C2' |
C3' |
O3' |
H3' |
123.1 |
122.7 |
| C4' |
C3' |
O3' |
H3' |
235.5 |
237.4 |
| O3' |
C3' |
C4' |
O4' |
263.2 |
217.5 |
| O3' |
C3' |
C4' |
C5' |
142.3 |
98.6 |
| O3' |
C3' |
C4' |
H4' |
24.7 |
336.2 |
| H3' |
C3' |
C2' |
H2' |
76.0 |
359.9 |
| H3' |
C3' |
C2' |
H2'' |
326.5 |
122.5 |
| C2' |
C3' |
H3' |
C4' |
117.6 |
114.7 |
| C2' |
C3' |
H3' |
O3' |
237.8 |
237.4 |
| C4' |
C3' |
H3' |
O3' |
120.3 |
122.6 |
| H3' |
C3' |
C4' |
O4' |
142.9 |
94.9 |
| H3' |
C3' |
C4' |
C5' |
22.0 |
335.9 |
| H3' |
C3' |
C4' |
H4' |
264.4 |
213.6 |
| H3' |
C3' |
O3' |
HO3' |
57.0 |
300.7 |
| C4' |
O4' |
C1' |
H1' |
92.2 |
78.4 |
| O4' |
C4' |
C3' |
O3' |
263.2 |
217.5 |
| O4' |
C4' |
C3' |
H3' |
142.9 |
94.9 |
| C3' |
C4' |
O4' |
C5' |
237.9 |
240.9 |
| C3' |
C4' |
O4' |
H4' |
120.3 |
118.7 |
| C5' |
C4' |
O4' |
H4' |
242.4 |
237.7 |
| O4' |
C4' |
C5' |
O5' |
280.5 |
61.5 |
| O4' |
C4' |
C5' |
H5' |
45.8 |
181.5 |
| O4' |
C4' |
C5' |
H5'' |
155.2 |
301.5 |
| C5' |
C4' |
C3' |
O3' |
142.3 |
98.6 |
| C5' |
C4' |
C3' |
H3' |
22.0 |
335.9 |
| C3' |
C4' |
C5' |
O4' |
118.3 |
115.4 |
| C3' |
C4' |
C5' |
H4' |
239.8 |
237.7 |
| O4' |
C4' |
C5' |
H4' |
121.4 |
122.3 |
| O5' |
C5' |
C4' |
H5' |
234.7 |
240.0 |
| O5' |
C5' |
C4' |
H5'' |
125.3 |
120.0 |
| C4' |
C5' |
O5' |
P |
188.5 |
180.0 |
| H5' |
C5' |
C4' |
H5'' |
250.6 |
239.9 |
| H4' |
C4' |
C3' |
O3' |
24.7 |
336.2 |
| H4' |
C4' |
C3' |
H3' |
264.4 |
213.6 |
| C3' |
C4' |
H4' |
O4' |
242.1 |
244.8 |
| C3' |
C4' |
H4' |
C5' |
121.7 |
122.5 |
| O4' |
C4' |
H4' |
C5' |
239.6 |
237.7 |
| H4' |
C4' |
C5' |
O5' |
159.1 |
299.2 |
| H4' |
C4' |
C5' |
H5' |
284.3 |
59.2 |
| H4' |
C4' |
C5' |
H5'' |
33.8 |
179.3 |
| HO3' |
O3' |
C3' |
H3' |
57.0 |
300.7 |
| O5' |
C5' |
C4' |
H4' |
159.1 |
299.2 |
| C4' |
C5' |
O5' |
H5' |
125.2 |
120.0 |
| C4' |
C5' |
O5' |
H5'' |
234.8 |
240.0 |
| H5' |
C5' |
O5' |
H5'' |
109.5 |
120.0 |
| C5' |
O5' |
P |
OP1 |
59.0 |
60.0 |
| C5' |
O5' |
P |
OP2 |
190.8 |
180.0 |
| C5' |
O5' |
P |
OP3 |
307.1 |
300.0 |
| H5' |
C5' |
C4' |
H4' |
284.3 |
59.2 |
| C4' |
C5' |
H5' |
O5' |
236.3 |
240.0 |
| C4' |
C5' |
H5' |
H5'' |
118.1 |
120.1 |
| O5' |
C5' |
H5' |
H5'' |
241.8 |
240.0 |
| H5' |
C5' |
O5' |
P |
63.2 |
60.0 |
| H5'' |
C5' |
C4' |
H4' |
33.8 |
179.3 |
| C4' |
C5' |
H5'' |
O5' |
123.7 |
120.0 |
| C4' |
C5' |
H5'' |
H5' |
241.9 |
239.9 |
| O5' |
C5' |
H5'' |
H5' |
118.2 |
120.0 |
| H5'' |
C5' |
O5' |
P |
313.7 |
300.0 |
| P |
O5' |
C5' |
H5' |
63.2 |
60.0 |
| P |
O5' |
C5' |
H5'' |
313.7 |
300.0 |
| OP1 |
P |
O5' |
OP2 |
228.2 |
240.0 |
| OP1 |
P |
O5' |
OP3 |
111.9 |
120.0 |
| OP2 |
P |
O5' |
OP3 |
243.7 |
240.0 |
| O5' |
P |
OP2 |
HOP2 |
180.0 |
180.0 |
| O5' |
P |
OP3 |
HOP3 |
180.0 |
299.9 |
| O5' |
P |
OP1 |
OP2 |
125.5 |
120.0 |
| O5' |
P |
OP1 |
OP3 |
251.5 |
240.0 |
| OP2 |
P |
OP1 |
OP3 |
126.0 |
120.0 |
| OP1 |
P |
OP2 |
HOP2 |
304.7 |
300.0 |
| OP1 |
P |
OP3 |
HOP3 |
67.5 |
179.9 |
| O5' |
P |
OP2 |
OP1 |
235.3 |
240.0 |
| O5' |
P |
OP2 |
OP3 |
110.9 |
120.0 |
| OP1 |
P |
OP2 |
OP3 |
235.6 |
240.0 |
| OP2 |
P |
OP3 |
HOP3 |
295.7 |
59.9 |
| O5' |
P |
OP3 |
OP1 |
112.4 |
120.0 |
| O5' |
P |
OP3 |
OP2 |
244.3 |
240.0 |
| OP1 |
P |
OP3 |
OP2 |
131.9 |
120.0 |
| OP3 |
P |
OP2 |
HOP2 |
69.1 |
60.0 |
| HOP2 |
OP2 |
P |
OP3 |
69.1 |
60.0 |