PDB Chemical Component BQM

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for BQM

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
F6	C12	1.321	1.399
C12	F4	1.301	1.399
C12	F5	1.325	1.399
C12	C11	1.518	1.507
C11	C9	1.406	1.365
C11	C13	1.405	1.394
C9	C10	1.511	1.507
C9	C8	1.401	1.400
C10	F3	1.312	1.399
C10	F2	1.305	1.399
C10	F1	1.315	1.399
C13	S	1.711	1.762
C13	C20	1.394	1.392
S	C14	1.712	1.762
C14	C19	1.398	1.388
C14	C15	1.395	1.390
C19	C18	1.405	1.388
C18	N2	1.356	1.397
C18	C17	1.391	1.390
C17	C16	1.389	1.382
C16	C15	1.396	1.381
C20	C21	1.393	1.366
C21	C8	1.385	1.401
C8	C7	1.478	1.469
C7	C6	1.333	1.350
C6	C1	1.478	1.461
C1	O1	1.218	1.218
C1	N1	1.344	1.348
N1	C5	1.478	1.472
N1	C2	1.468	1.471
C5	C4	1.527	1.533
C4	O2	1.430	1.430
O2	C3	1.430	1.430
C3	C2	1.525	1.529
C19	H19	1.080	1.079
N2	HN2	1.000	0.969
N2	HN2A	1.000	0.970
C17	H17	1.079	1.079
C16	H16	1.080	1.081
C15	H15	1.080	1.080
C20	H20	1.080	1.081
C21	H21	1.080	1.080
C7	H7	1.080	1.081
C6	H6	1.080	1.080
C5	H5	1.100	1.089
C5	H5A	1.100	1.089
C4	H4	1.101	1.089
C4	H4A	1.101	1.090
C3	H3	1.100	1.090
C3	H3A	1.100	1.090
C2	H2	1.100	1.091
C2	H2A	1.100	1.090

Bond Angles for BQM

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
F6	C12	F4	112.1	109.4
F6	C12	F5	99.9	109.5
F6	C12	C11	110.9	109.5
F4	C12	F5	111.5	109.5
F4	C12	C11	112.9	109.4
F5	C12	C11	108.6	109.5
C12	C11	C9	120.9	120.0
C12	C11	C13	119.3	119.9
C9	C11	C13	119.6	120.1
C11	C9	C10	122.2	120.1
C11	C9	C8	119.5	119.9
C11	C13	S	123.1	119.9
C11	C13	C20	119.6	120.2
C10	C9	C8	117.9	120.0
C9	C10	F3	119.0	109.5
C9	C10	F2	108.4	109.5
C9	C10	F1	108.6	109.5
C9	C8	C21	120.7	119.9
C9	C8	C7	120.0	120.1
F3	C10	F2	110.0	109.5
F3	C10	F1	110.9	109.4
F2	C10	F1	98.0	109.5
S	C13	C20	117.3	119.9
C13	S	C14	110.8	103.0
C13	C20	C21	120.8	120.1
C13	C20	H20	119.6	120.0
S	C14	C19	122.8	120.0
S	C14	C15	118.6	120.0
C19	C14	C15	118.6	119.9
C14	C19	C18	120.1	119.8
C14	C19	H19	120.0	120.1
C14	C15	C16	121.3	120.0
C14	C15	H15	119.4	120.0
C19	C18	N2	120.8	120.0
C19	C18	C17	120.7	120.0
C18	C19	H19	120.0	120.1
N2	C18	C17	118.4	120.0
C18	N2	HN2	109.5	120.0
C18	N2	HN2A	109.5	120.0
C18	C17	C16	119.3	120.0
C18	C17	H17	120.4	120.0
C17	C16	C15	120.1	120.2
C16	C17	H17	120.4	120.0
C17	C16	H16	119.9	119.9
C15	C16	H16	119.9	119.9
C16	C15	H15	119.4	120.0
C20	C21	C8	119.6	119.9
C21	C20	H20	119.6	119.9
C20	C21	H21	120.2	120.0
C21	C8	C7	119.3	120.0
C8	C21	H21	120.2	120.1
C8	C7	C6	123.1	120.0
C8	C7	H7	118.4	120.0
C7	C6	C1	118.3	120.0
C6	C7	H7	118.5	120.0
C7	C6	H6	120.9	120.0
C6	C1	O1	116.7	120.0
C6	C1	N1	120.8	120.1
C1	C6	H6	120.9	120.0
O1	C1	N1	122.5	120.0
C1	N1	C5	120.8	120.9
C1	N1	C2	124.0	121.0
C5	N1	C2	115.2	118.0
N1	C5	C4	107.8	108.4
N1	C5	H5	110.1	109.7
N1	C5	H5A	110.5	109.7
N1	C2	C3	105.6	108.6
N1	C2	H2	110.8	109.7
N1	C2	H2A	111.6	109.7
C5	C4	O2	110.3	109.2
C4	C5	H5	110.0	109.7
C4	C5	H5A	110.4	109.7
C5	C4	H4	109.2	109.5
C5	C4	H4A	109.0	109.5
C4	O2	C3	114.7	114.1
O2	C4	H4	109.2	109.6
O2	C4	H4A	109.0	109.5
O2	C3	C2	110.8	109.3
O2	C3	H3	109.0	109.5
O2	C3	H3A	108.7	109.5
C2	C3	H3	109.0	109.6
C2	C3	H3A	108.7	109.4
C3	C2	H2	110.8	109.6
C3	C2	H2A	111.6	109.5
HN2	N2	HN2A	109.4	120.0
H5	C5	H5A	108.1	109.8
H4	C4	H4A	110.2	109.6
H3	C3	H3A	110.5	109.5
H2	C2	H2A	106.5	109.7

Torsion Angles for BQM

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
F4	C12	F6	F5	241.7	240.0
F4	C12	F6	C11	127.3	120.0
F5	C12	F6	C11	245.5	239.9
F6	C12	C11	C9	26.0	83.6
F6	C12	C11	C13	211.2	263.3
F6	C12	F4	F5	111.1	120.0
F6	C12	F4	C11	233.8	240.0
F5	C12	F4	C11	122.7	120.0
F4	C12	C11	C9	259.2	323.6
F4	C12	C11	C13	84.4	143.4
F6	C12	F5	F4	241.3	240.1
F6	C12	F5	C11	116.2	120.1
F4	C12	F5	C11	234.9	240.0
F5	C12	C11	C9	134.9	203.6
F5	C12	C11	C13	320.1	23.4
F6	C12	C11	F4	126.8	119.9
F6	C12	C11	F5	251.1	240.0
F4	C12	C11	F5	124.3	120.0
C9	C11	C12	C13	174.9	180.3
C12	C11	C9	C10	9.1	0.0
C12	C11	C9	C8	182.1	180.0
C12	C11	C13	S	354.9	0.1
C12	C11	C13	C20	176.7	180.0
C12	C11	C9	C13	185.2	179.7
C9	C11	C13	S	180.0	179.8
C9	C11	C13	C20	1.8	359.7
C10	C9	C11	C8	187.0	180.0
C11	C9	C10	F3	267.4	85.7
C11	C9	C10	F2	33.9	205.7
C11	C9	C10	F1	139.3	325.8
C11	C9	C8	C21	2.9	359.9
C11	C9	C8	C7	180.7	180.0
C12	C11	C13	C9	174.9	180.3
C13	C11	C9	C10	183.9	180.3
C13	C11	C9	C8	356.9	0.3
S	C13	C11	C20	178.2	180.1
C11	C13	S	C14	173.1	185.7
C11	C13	C20	C21	359.8	360.0
C11	C13	C20	H20	179.8	180.0
C10	C9	C11	C13	183.9	180.3
C11	C9	C10	C8	173.1	180.0
C10	C9	C8	C21	176.2	180.0
C10	C9	C8	C7	354.0	0.0
F3	C10	C9	F2	233.5	240.0
F3	C10	C9	F1	128.0	119.9
F2	C10	C9	F1	254.6	240.0
C8	C9	C11	C13	356.9	0.3
C11	C9	C8	C10	186.7	180.0
C8	C9	C10	F3	94.2	265.7
C8	C9	C10	F2	220.8	25.7
C8	C9	C10	F1	326.2	145.7
C20	C21	C8	C9	358.6	359.8
C21	C8	C9	C7	182.3	179.9
C9	C8	C21	H21	178.6	180.0
C9	C8	C7	C6	198.0	197.2
C9	C8	C7	H7	18.1	17.2
F3	C10	C9	C8	94.2	265.7
C9	C10	F3	F2	125.8	120.0
C9	C10	F3	F1	233.0	240.0
F2	C10	F3	F1	107.3	120.0
F2	C10	C9	C8	220.8	25.7
C9	C10	F2	F3	228.4	240.0
C9	C10	F2	F1	112.7	120.0
F3	C10	F2	F1	244.3	240.0
F1	C10	C9	C8	326.2	145.7
C9	C10	F1	F3	132.5	120.0
C9	C10	F1	F2	247.5	240.0
F3	C10	F1	F2	115.0	120.0
C11	C13	S	C20	181.8	179.9
S	C13	C20	C21	181.5	179.9
S	C13	C20	H20	1.5	359.9
C13	S	C14	C19	81.0	85.2
C13	S	C14	C15	261.7	264.9
C11	C13	C20	S	178.3	180.1
C20	C13	S	C14	351.3	5.8
C13	C20	C21	C8	0.0	0.2
C21	C20	C13	H20	180.0	180.0
C13	C20	C21	H21	180.0	180.0
C14	S	C13	C20	351.3	5.8
C19	C14	S	C15	179.4	180.3
S	C14	C19	C18	180.5	180.0
S	C14	C19	H19	0.5	359.9
S	C14	C15	C16	179.6	179.7
S	C14	C15	H15	359.5	0.1
S	C14	C19	C15	180.6	179.7
C19	C14	C15	C16	0.2	359.4
C19	C14	C15	H15	180.1	179.7
C14	C19	C18	N2	180.3	180.0
C14	C19	C18	C17	0.3	360.0
C18	C19	C14	H19	180.0	180.0
S	C14	C15	C19	179.4	180.3
C15	C14	C19	C18	359.9	0.3
C15	C14	C19	H19	179.9	180.3
C17	C16	C15	C14	359.6	0.6
C14	C15	C16	H16	179.6	180.3
C16	C15	C14	H15	180.0	179.7
C18	C19	C14	C15	359.9	0.3
C14	C19	C18	H19	180.0	180.0
N2	C18	C19	C17	180.0	180.0
C19	C18	N2	HN2	310.1	359.9
C19	C18	N2	HN2A	70.1	180.0
C19	C18	C17	C16	359.6	0.0
C19	C18	C17	H17	179.5	180.0
C19	C18	N2	C17	180.0	180.0
N2	C18	C19	H19	0.3	0.1
N2	C18	C17	C16	179.5	180.0
N2	C18	C17	H17	359.5	360.0
HN2	N2	C18	HN2A	240.0	180.0
C19	C18	C17	N2	180.0	180.0
C17	C18	C19	H19	180.2	180.0
C17	C18	N2	HN2	130.1	180.0
C17	C18	N2	HN2A	250.1	0.0
C18	C17	C16	C15	0.5	359.7
C16	C17	C18	H17	180.0	180.0
C18	C17	C16	H16	180.5	180.0
C14	C15	C16	C17	359.6	0.6
C18	C17	C16	H17	180.0	180.0
C15	C16	C17	H16	180.0	179.7
C17	C16	C15	H15	179.7	180.3
C14	C15	C16	H15	180.0	180.3
C15	C16	C17	H17	180.5	179.7
C17	C16	C15	H16	180.0	180.3
C9	C8	C21	C20	358.6	359.8
C13	C20	C21	H20	180.0	180.0
C20	C21	C8	C7	180.9	179.7
C8	C21	C20	H21	180.0	180.2
C9	C8	C21	C7	177.8	180.1
C8	C21	C20	H20	180.0	180.3
C20	C21	C8	H21	180.0	179.8
C21	C8	C7	C6	15.8	17.3
C21	C8	C7	H7	195.8	197.2
C9	C8	C7	C21	182.2	179.9
C7	C8	C21	H21	0.8	360.0
C8	C7	C6	C1	178.0	180.0
C6	C7	C8	H7	180.0	180.1
C8	C7	C6	H6	358.0	360.0
C8	C7	C6	H7	180.0	179.9
C7	C6	C1	O1	337.2	6.5
C7	C6	C1	N1	158.1	186.5
C1	C6	C7	H6	180.0	180.0
C1	C6	C7	H7	358.0	0.0
C7	C6	C1	H6	180.0	180.0
O1	C1	C6	N1	179.1	180.0
C6	C1	N1	C5	180.8	5.5
C6	C1	N1	C2	358.8	185.3
C6	C1	O1	N1	180.9	180.0
O1	C1	C6	H6	157.3	186.5
O1	C1	N1	C5	1.7	185.5
O1	C1	N1	C2	179.8	5.3
C6	C1	N1	O1	179.1	180.0
N1	C1	C6	H6	338.1	6.5
C5	N1	C1	C2	181.9	180.2
C1	N1	C5	C4	236.1	129.5
C1	N1	C5	H5	356.1	249.2
C1	N1	C5	H5A	115.4	9.8
C1	N1	C2	C3	122.7	230.5
C1	N1	C2	H2	242.7	350.2
C1	N1	C2	H2A	1.2	110.8
C1	N1	C5	C2	178.2	179.8
C5	N1	C2	C3	300.9	50.3
C5	N1	C2	H2	60.9	170.0
C5	N1	C2	H2A	179.4	290.6
N1	C5	C4	O2	307.8	52.3
C4	C5	N1	H5	240.0	240.3
C4	C5	N1	H5A	120.7	119.7
N1	C5	C4	H4	67.8	172.3
N1	C5	C4	H4A	188.2	292.4
H5	C5	N1	H5A	240.7	239.4
C1	N1	C2	C5	181.8	180.2
C2	N1	C5	C4	57.9	309.7
C2	N1	C5	H5	177.9	69.4
C2	N1	C5	H5A	297.2	190.0
O2	C3	C2	N1	56.4	307.9
N1	C2	C3	H3	296.4	187.9
N1	C2	C3	H3A	175.8	67.8
C3	C2	N1	H2	240.0	240.2
C3	C2	N1	H2A	121.5	119.6
H2	C2	N1	H2A	241.5	239.4
C4	C5	N1	C2	57.9	309.7
N1	C5	C4	H5	120.0	119.7
N1	C5	C4	H5A	239.3	240.3
C5	C4	O2	C3	56.2	297.4
O2	C4	C5	H4	240.0	240.0
O2	C4	C5	H4A	119.6	119.9
H5	C5	C4	H5A	119.3	120.6
H4	C4	C5	H4A	239.6	239.9
O2	C4	C5	H5	187.8	292.6
O2	C4	C5	H5A	68.5	172.0
C5	C4	O2	H4	120.0	119.9
C5	C4	O2	H4A	240.4	240.1
C4	O2	C3	C2	300.9	62.5
C4	O2	C3	H3	61.0	182.5
C4	O2	C3	H3A	181.5	302.6
H4	C4	O2	H4A	120.4	120.2
N1	C2	C3	O2	56.4	307.9
C3	O2	C4	H4	296.2	177.5
C3	O2	C4	H4A	175.9	57.3
C2	C3	O2	H3	240.0	239.9
C2	C3	O2	H3A	119.4	119.8
O2	C3	C2	H2	296.4	188.1
O2	C3	C2	H2A	177.9	67.7
H3	C3	O2	H3A	239.4	239.9
N1	C2	C3	H2	120.0	119.8
N1	C2	C3	H2A	238.5	240.2
O2	C3	C2	H3	120.0	120.0
O2	C3	C2	H3A	240.6	240.1
H3	C3	C2	H3A	120.6	120.1
H2	C2	C3	H2A	118.5	120.4
H19	C19	C14	C15	179.9	180.3
C14	C19	H19	C18	180.0	180.0
H19	C19	C18	N2	0.3	0.1
H19	C19	C18	C17	180.2	180.0
HN2	N2	C18	C17	130.1	180.0
C18	N2	HN2	HN2A	120.0	180.0
HN2A	N2	C18	C17	250.1	0.0
C18	N2	HN2A	HN2	240.0	180.0
C18	C17	H17	C16	180.0	180.0
H17	C17	C16	C15	180.5	179.7
H17	C17	C16	H16	0.5	359.9
C17	C16	H16	C15	180.0	179.7
H16	C16	C17	H17	0.5	359.9
H16	C16	C15	H15	359.7	0.0
C14	C15	H15	C16	180.0	179.7
H15	C15	C16	H16	359.7	0.0
C13	C20	H20	C21	180.0	180.0
H20	C20	C21	C8	180.0	180.3
H20	C20	C21	H21	0.0	0.0
C20	C21	H21	C8	180.0	180.2
H21	C21	C20	H20	0.0	0.0
H21	C21	C8	C7	0.8	360.0
C8	C7	H7	C6	180.0	180.1
H7	C7	C6	C1	358.0	0.0
H7	C7	C6	H6	178.0	180.0
C7	C6	H6	C1	180.0	180.0
H6	C6	C7	H7	178.0	180.0
H6	C6	C1	O1	157.3	186.5
H6	C6	C1	N1	338.1	6.5
H5	C5	N1	C2	177.9	69.4
N1	C5	H5	C4	241.4	241.1
N1	C5	H5	H5A	120.7	120.5
H5	C5	C4	O2	187.8	292.6
C4	C5	H5	H5A	239.3	239.4
H5	C5	C4	H4	307.8	52.5
H5	C5	C4	H4A	68.1	172.7
H5A	C5	N1	C2	297.2	190.0
N1	C5	H5A	C4	119.1	118.9
N1	C5	H5A	H5	239.5	239.5
H5A	C5	C4	O2	68.5	172.0
C4	C5	H5A	H5	120.4	120.6
H5A	C5	C4	H4	188.5	291.9
H5A	C5	C4	H4A	308.9	52.1
C5	C4	H4	O2	239.3	240.3
H4	C4	C5	H5	307.8	52.5
H4	C4	C5	H5A	188.5	291.9
C5	C4	H4	H4A	119.7	120.1
H4	C4	O2	C3	296.2	177.5
O2	C4	H4	H4A	240.4	239.8
C5	C4	H4A	O2	120.5	119.7
H4A	C4	C5	H5	68.1	172.7
H4A	C4	C5	H5A	308.9	52.1
C5	C4	H4A	H4	240.2	239.9
H4A	C4	O2	C3	175.9	57.3
O2	C4	H4A	H4	119.8	120.2
O2	C3	H3	C2	238.9	240.1
O2	C3	H3	H3A	119.4	120.1
C2	C3	H3	H3A	240.6	240.0
H3	C3	C2	H2	176.4	68.1
H3	C3	C2	H2A	57.9	307.7
O2	C3	H3A	C2	120.7	119.8
O2	C3	H3A	H3	240.4	239.9
C2	C3	H3A	H3	119.6	120.1
H3A	C3	C2	H2	55.8	308.0
H3A	C3	C2	H2A	297.3	187.6
N1	C2	H2	C3	243.2	240.8
N1	C2	H2	H2A	121.6	120.6
H2	C2	C3	H3	176.4	68.1
H2	C2	C3	H3A	55.8	308.0
C3	C2	H2	H2A	238.4	239.7
N1	C2	H2A	C3	117.9	119.1
N1	C2	H2A	H2	238.9	239.4
H2A	C2	C3	H3	57.9	307.7
H2A	C2	C3	H3A	297.3	187.6
C3	C2	H2A	H2	121.1	120.3