PDB Chemical Component BQD
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for BQD
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
O12 |
C11 |
1.455 |
1.430 |
C10 |
C11 |
1.319 |
1.551 |
C10 |
C09 |
1.547 |
1.549 |
C11 |
C03 |
1.679 |
1.544 |
C09 |
N04 |
1.602 |
1.474 |
C03 |
C02 |
1.528 |
1.507 |
C03 |
N04 |
1.284 |
1.470 |
C24 |
C23 |
1.426 |
1.359 |
C24 |
C14 |
1.385 |
1.400 |
N13 |
C02 |
1.458 |
1.348 |
N13 |
C14 |
1.499 |
1.398 |
C02 |
O01 |
1.172 |
1.213 |
N04 |
C05 |
1.485 |
1.348 |
C23 |
C22 |
1.427 |
1.406 |
C14 |
C15 |
1.409 |
1.378 |
C22 |
C21 |
1.430 |
1.405 |
C22 |
C16 |
1.368 |
1.418 |
C15 |
C16 |
1.446 |
1.405 |
C21 |
C19 |
1.395 |
1.361 |
C16 |
C17 |
1.425 |
1.405 |
C19 |
BR |
1.960 |
1.891 |
C19 |
C18 |
1.391 |
1.394 |
C17 |
C18 |
1.405 |
1.361 |
C05 |
C06 |
1.554 |
1.507 |
C05 |
O08 |
1.216 |
1.212 |
C06 |
C07 |
1.572 |
1.530 |
C10 |
H102 |
1.100 |
1.090 |
C10 |
H101 |
1.100 |
1.090 |
C15 |
H151 |
1.080 |
1.079 |
C17 |
H171 |
1.080 |
1.080 |
C21 |
H211 |
1.080 |
1.081 |
C24 |
H241 |
1.080 |
1.080 |
C03 |
H031 |
1.101 |
1.090 |
C06 |
H062 |
1.100 |
1.090 |
C06 |
H061 |
1.100 |
1.090 |
C07 |
H073 |
1.101 |
1.090 |
C07 |
H1 |
1.100 |
1.089 |
C07 |
H072 |
1.100 |
1.090 |
C09 |
H092 |
1.100 |
1.091 |
C09 |
H091 |
1.100 |
1.090 |
C11 |
H111 |
1.100 |
1.090 |
O12 |
H121 |
0.949 |
0.966 |
N13 |
H131 |
1.000 |
0.970 |
C18 |
H181 |
1.080 |
1.080 |
C23 |
H231 |
1.080 |
1.080 |
Bond Angles for BQD
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O12 |
C11 |
H111 |
110.0 |
110.8 |
C09 |
C10 |
C11 |
105.9 |
101.6 |
C10 |
C11 |
C03 |
107.9 |
103.0 |
C11 |
C10 |
H102 |
110.3 |
110.9 |
C11 |
C10 |
H101 |
110.3 |
111.0 |
C10 |
C11 |
H111 |
112.1 |
110.7 |
C10 |
C09 |
N04 |
105.2 |
104.9 |
C09 |
C10 |
H102 |
110.4 |
111.0 |
C09 |
C10 |
H101 |
110.4 |
111.1 |
C10 |
C09 |
H092 |
110.5 |
110.4 |
C10 |
C09 |
H091 |
110.5 |
110.4 |
C11 |
C03 |
H031 |
107.5 |
110.0 |
C03 |
N04 |
C05 |
126.1 |
125.6 |
N04 |
C03 |
H031 |
113.1 |
109.9 |
C14 |
C24 |
C23 |
120.7 |
120.9 |
C23 |
C24 |
H241 |
119.7 |
119.5 |
C24 |
C23 |
H231 |
120.4 |
120.1 |
C24 |
C14 |
N13 |
116.8 |
119.7 |
C14 |
C24 |
H241 |
119.7 |
119.5 |
C14 |
N13 |
H131 |
117.5 |
120.0 |
N04 |
C05 |
C06 |
119.8 |
120.0 |
N04 |
C05 |
O08 |
119.7 |
120.0 |
C14 |
C15 |
C16 |
119.6 |
119.5 |
C14 |
C15 |
H151 |
120.2 |
120.2 |
C22 |
C21 |
C19 |
119.6 |
119.7 |
C22 |
C21 |
H211 |
120.2 |
120.1 |
C15 |
C16 |
C22 |
120.2 |
119.4 |
C15 |
C16 |
C17 |
119.7 |
121.2 |
C16 |
C15 |
H151 |
120.2 |
120.2 |
C21 |
C19 |
BR |
118.4 |
119.5 |
C21 |
C19 |
C18 |
120.5 |
121.0 |
C19 |
C21 |
H211 |
120.2 |
120.2 |
C16 |
C17 |
C18 |
119.7 |
119.7 |
C16 |
C17 |
H171 |
120.2 |
120.2 |
C19 |
C18 |
H181 |
120.0 |
119.6 |
C18 |
C17 |
H171 |
120.2 |
120.1 |
C17 |
C18 |
H181 |
120.0 |
119.5 |
C06 |
C05 |
O08 |
120.5 |
120.0 |
C05 |
C06 |
C07 |
112.2 |
109.5 |
C05 |
C06 |
H062 |
108.8 |
109.5 |
C05 |
C06 |
H061 |
108.8 |
109.5 |
C07 |
C06 |
H062 |
108.8 |
109.4 |
C07 |
C06 |
H061 |
108.8 |
109.4 |
C06 |
C07 |
H073 |
109.5 |
109.5 |
C06 |
C07 |
H1 |
109.4 |
109.5 |
C06 |
C07 |
H072 |
109.5 |
109.4 |
H102 |
C10 |
H101 |
109.5 |
110.9 |
H062 |
C06 |
H061 |
109.5 |
109.5 |
H073 |
C07 |
H1 |
109.5 |
109.4 |
H073 |
C07 |
H072 |
109.4 |
109.5 |
H1 |
C07 |
H072 |
109.5 |
109.5 |
H092 |
C09 |
H091 |
109.4 |
110.4 |
Torsion Angles for BQD
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O12 |
C11 |
C10 |
H102 |
20.9 |
159.1 |
O12 |
C11 |
C10 |
H101 |
142.1 |
35.3 |
C10 |
C11 |
O12 |
H111 |
236.2 |
236.7 |
O12 |
C11 |
C03 |
H031 |
231.1 |
215.7 |
O12 |
C11 |
C10 |
H111 |
122.6 |
123.3 |
C11 |
C10 |
C09 |
N04 |
336.0 |
323.0 |
C09 |
C10 |
C11 |
H102 |
240.6 |
118.1 |
C09 |
C10 |
C11 |
H101 |
119.5 |
241.8 |
C11 |
C10 |
C09 |
H092 |
95.3 |
81.8 |
C11 |
C10 |
C09 |
H091 |
216.7 |
204.1 |
C10 |
C11 |
C03 |
H031 |
111.6 |
97.3 |
H102 |
C10 |
C11 |
H101 |
238.9 |
123.8 |
C09 |
C10 |
C11 |
C03 |
21.1 |
35.5 |
C11 |
C10 |
C09 |
H102 |
119.4 |
242.0 |
C11 |
C10 |
C09 |
H101 |
240.6 |
118.1 |
C09 |
C10 |
C11 |
H111 |
139.0 |
153.8 |
H102 |
C10 |
C09 |
H101 |
121.2 |
236.1 |
H092 |
C09 |
C10 |
H091 |
238.7 |
237.7 |
C03 |
C11 |
C10 |
H102 |
140.6 |
277.4 |
C03 |
C11 |
C10 |
H101 |
261.7 |
153.6 |
C10 |
C11 |
C03 |
H111 |
121.0 |
118.4 |
N04 |
C03 |
C11 |
H031 |
237.3 |
240.5 |
N04 |
C09 |
C10 |
C11 |
336.0 |
323.0 |
N04 |
C09 |
C10 |
H102 |
216.6 |
81.0 |
N04 |
C09 |
C10 |
H101 |
95.4 |
204.9 |
C10 |
C09 |
N04 |
H092 |
119.3 |
118.8 |
C10 |
C09 |
N04 |
H091 |
240.7 |
241.1 |
C09 |
N04 |
C03 |
H031 |
236.1 |
239.4 |
C10 |
C11 |
C03 |
C02 |
229.2 |
218.4 |
C10 |
C11 |
C03 |
N04 |
348.9 |
337.8 |
C10 |
C09 |
N04 |
C03 |
16.9 |
24.1 |
C11 |
C03 |
N04 |
H031 |
119.2 |
119.6 |
C03 |
N04 |
C05 |
C06 |
180.1 |
180.0 |
C03 |
N04 |
C05 |
O08 |
0.2 |
0.0 |
C23 |
C24 |
C14 |
N13 |
179.1 |
180.5 |
C14 |
C24 |
C23 |
H241 |
180.0 |
179.1 |
C23 |
C24 |
C14 |
H241 |
180.0 |
180.9 |
C14 |
C24 |
C23 |
H231 |
179.8 |
180.0 |
C24 |
C14 |
N13 |
H131 |
10.0 |
215.2 |
C24 |
C14 |
C15 |
C16 |
359.3 |
359.9 |
C24 |
C14 |
C15 |
H151 |
179.3 |
179.7 |
C24 |
C14 |
N13 |
C02 |
190.0 |
35.3 |
N13 |
C14 |
C24 |
C23 |
179.1 |
180.5 |
N13 |
C14 |
C24 |
H241 |
359.0 |
359.6 |
N13 |
C14 |
C15 |
C16 |
181.1 |
180.0 |
N13 |
C14 |
C15 |
H151 |
1.1 |
359.8 |
C10 |
C09 |
N04 |
C05 |
197.2 |
204.1 |
C05 |
N04 |
C03 |
H031 |
55.9 |
59.4 |
C06 |
C05 |
N04 |
O08 |
179.9 |
180.0 |
N04 |
C05 |
C06 |
C07 |
140.0 |
180.0 |
N04 |
C05 |
C06 |
H062 |
260.4 |
300.0 |
N04 |
C05 |
C06 |
H061 |
19.6 |
60.0 |
C23 |
C22 |
C21 |
H211 |
359.7 |
359.9 |
C14 |
C15 |
C16 |
C22 |
0.2 |
359.8 |
C14 |
C15 |
C16 |
C17 |
180.3 |
179.8 |
C16 |
C15 |
C14 |
H151 |
180.0 |
180.2 |
C15 |
C16 |
C22 |
C21 |
180.0 |
179.9 |
C22 |
C21 |
C19 |
BR |
180.1 |
180.0 |
C22 |
C21 |
C19 |
C18 |
0.1 |
360.0 |
C19 |
C21 |
C22 |
H211 |
180.0 |
180.1 |
C16 |
C22 |
C21 |
C19 |
360.0 |
0.0 |
C16 |
C22 |
C21 |
H211 |
180.0 |
180.0 |
C15 |
C16 |
C22 |
C17 |
180.2 |
180.0 |
C22 |
C16 |
C15 |
H151 |
180.2 |
180.0 |
C22 |
C16 |
C17 |
C18 |
0.2 |
0.1 |
C22 |
C16 |
C17 |
H171 |
180.2 |
180.0 |
C14 |
C15 |
C16 |
H151 |
180.0 |
179.8 |
C15 |
C16 |
C17 |
C18 |
180.0 |
180.1 |
C15 |
C16 |
C17 |
H171 |
0.0 |
0.0 |
C22 |
C21 |
C19 |
H211 |
180.0 |
179.9 |
C21 |
C19 |
C18 |
H181 |
179.9 |
180.0 |
C15 |
C16 |
C17 |
C22 |
179.8 |
180.0 |
C17 |
C16 |
C15 |
H151 |
0.3 |
360.0 |
C18 |
C17 |
C16 |
H171 |
180.0 |
180.1 |
C16 |
C17 |
C18 |
H181 |
179.9 |
180.0 |
C21 |
C19 |
BR |
C18 |
180.0 |
180.0 |
BR |
C19 |
C21 |
H211 |
0.1 |
0.0 |
BR |
C19 |
C18 |
H181 |
360.0 |
360.0 |
C21 |
C19 |
C18 |
BR |
180.0 |
180.0 |
C18 |
C19 |
C21 |
H211 |
180.1 |
180.0 |
C19 |
C18 |
C17 |
H171 |
179.9 |
180.0 |
C17 |
C18 |
C19 |
H181 |
180.0 |
180.1 |
C21 |
C19 |
C18 |
C17 |
360.0 |
0.0 |
C16 |
C17 |
C18 |
H171 |
180.0 |
179.9 |
C19 |
C18 |
C17 |
H181 |
180.0 |
179.9 |
N04 |
C05 |
C06 |
O08 |
180.1 |
180.0 |
C07 |
C06 |
C05 |
H062 |
239.6 |
240.0 |
C07 |
C06 |
C05 |
H061 |
120.4 |
120.0 |
C05 |
C06 |
C07 |
H073 |
180.0 |
60.0 |
C05 |
C06 |
C07 |
H1 |
300.0 |
180.0 |
C05 |
C06 |
C07 |
H072 |
60.0 |
300.0 |
H062 |
C06 |
C05 |
H061 |
240.8 |
239.9 |
N04 |
C05 |
O08 |
C06 |
179.9 |
180.0 |
O08 |
C05 |
C06 |
C07 |
319.8 |
0.0 |
O08 |
C05 |
C06 |
H062 |
80.3 |
120.0 |
O08 |
C05 |
C06 |
H061 |
199.4 |
240.0 |
C07 |
C06 |
C05 |
O08 |
319.8 |
0.0 |
C05 |
C06 |
C07 |
H062 |
120.4 |
120.0 |
C05 |
C06 |
C07 |
H061 |
239.6 |
240.0 |
H062 |
C06 |
C07 |
H061 |
119.1 |
120.0 |
H073 |
C07 |
C06 |
H1 |
240.0 |
240.0 |
H073 |
C07 |
C06 |
H072 |
120.0 |
120.0 |
H1 |
C07 |
C06 |
H072 |
240.0 |
240.0 |
C09 |
C10 |
H102 |
C11 |
116.6 |
247.8 |
H102 |
C10 |
C11 |
C03 |
140.6 |
277.4 |
C11 |
C10 |
H102 |
H101 |
121.6 |
236.1 |
H102 |
C10 |
C11 |
H111 |
258.4 |
35.8 |
H102 |
C10 |
C09 |
N04 |
216.6 |
81.0 |
C09 |
C10 |
H102 |
H101 |
238.3 |
124.0 |
H102 |
C10 |
C09 |
H092 |
335.9 |
199.9 |
H102 |
C10 |
C09 |
H091 |
97.2 |
322.1 |
C09 |
C10 |
H101 |
C11 |
243.3 |
112.3 |
H101 |
C10 |
C11 |
C03 |
261.7 |
153.6 |
C11 |
C10 |
H101 |
H102 |
238.4 |
123.8 |
H101 |
C10 |
C11 |
H111 |
19.5 |
272.0 |
H101 |
C10 |
C09 |
N04 |
95.4 |
204.9 |
C09 |
C10 |
H101 |
H102 |
121.7 |
236.1 |
H101 |
C10 |
C09 |
H092 |
214.8 |
323.7 |
H101 |
C10 |
C09 |
H091 |
336.1 |
86.0 |
C14 |
C15 |
H151 |
C16 |
180.0 |
180.2 |
H151 |
C15 |
C16 |
C22 |
180.2 |
180.0 |
H151 |
C15 |
C16 |
C17 |
0.3 |
360.0 |
C16 |
C17 |
H171 |
C18 |
180.0 |
180.1 |
H171 |
C17 |
C18 |
H181 |
359.9 |
0.1 |
C22 |
C21 |
H211 |
C19 |
180.0 |
180.1 |
H211 |
C21 |
C19 |
BR |
0.1 |
0.0 |
H211 |
C21 |
C19 |
C18 |
180.1 |
180.0 |
C14 |
C24 |
H241 |
C23 |
180.0 |
180.9 |
H241 |
C24 |
C23 |
H231 |
359.8 |
0.8 |
H241 |
C24 |
C14 |
N13 |
359.0 |
359.6 |
H031 |
C03 |
N04 |
C05 |
55.9 |
59.4 |
H062 |
C06 |
C05 |
O08 |
80.3 |
120.0 |
C05 |
C06 |
H062 |
C07 |
237.5 |
240.0 |
C05 |
C06 |
H062 |
H061 |
118.8 |
120.1 |
C07 |
C06 |
H062 |
H061 |
241.3 |
240.0 |
H062 |
C06 |
C07 |
H073 |
59.6 |
300.0 |
H062 |
C06 |
C07 |
H1 |
179.6 |
60.0 |
H062 |
C06 |
C07 |
H072 |
299.6 |
180.1 |
H061 |
C06 |
C05 |
O08 |
199.4 |
240.0 |
C05 |
C06 |
H061 |
C07 |
122.5 |
120.0 |
C05 |
C06 |
H061 |
H062 |
241.3 |
239.9 |
C07 |
C06 |
H061 |
H062 |
118.7 |
120.0 |
H061 |
C06 |
C07 |
H073 |
300.4 |
180.0 |
H061 |
C06 |
C07 |
H1 |
60.4 |
300.0 |
H061 |
C06 |
C07 |
H072 |
180.4 |
60.0 |
H073 |
C07 |
C06 |
H062 |
59.6 |
300.0 |
H073 |
C07 |
C06 |
H061 |
300.4 |
180.0 |
C06 |
C07 |
H073 |
H1 |
120.0 |
120.1 |
C06 |
C07 |
H073 |
H072 |
240.0 |
240.0 |
H1 |
C07 |
H073 |
H072 |
120.0 |
120.0 |
H1 |
C07 |
C06 |
H062 |
179.6 |
60.0 |
H1 |
C07 |
C06 |
H061 |
60.4 |
300.0 |
C06 |
C07 |
H1 |
H073 |
240.0 |
240.0 |
C06 |
C07 |
H1 |
H072 |
120.0 |
120.0 |
H073 |
C07 |
H1 |
H072 |
240.0 |
240.0 |
H072 |
C07 |
C06 |
H062 |
299.6 |
180.1 |
H072 |
C07 |
C06 |
H061 |
180.4 |
60.0 |
C06 |
C07 |
H072 |
H073 |
120.0 |
120.0 |
C06 |
C07 |
H072 |
H1 |
240.0 |
239.9 |
H073 |
C07 |
H072 |
H1 |
120.0 |
120.0 |
H092 |
C09 |
C10 |
C11 |
95.3 |
81.8 |
C10 |
C09 |
H092 |
N04 |
243.9 |
244.6 |
H092 |
C09 |
C10 |
H102 |
335.9 |
199.9 |
H092 |
C09 |
C10 |
H101 |
214.8 |
323.7 |
C10 |
C09 |
H092 |
H091 |
122.0 |
122.3 |
H091 |
C09 |
C10 |
C11 |
216.7 |
204.1 |
C10 |
C09 |
H091 |
N04 |
116.1 |
115.5 |
H091 |
C09 |
C10 |
H102 |
97.2 |
322.1 |
H091 |
C09 |
C10 |
H101 |
336.1 |
86.0 |
C10 |
C09 |
H091 |
H092 |
238.0 |
237.7 |
C10 |
C11 |
H111 |
C03 |
241.8 |
246.5 |
H111 |
C11 |
C10 |
H102 |
258.4 |
35.8 |
H111 |
C11 |
C10 |
H101 |
19.5 |
272.0 |
H111 |
C11 |
C03 |
H031 |
350.6 |
338.9 |
H121 |
O12 |
C11 |
H111 |
303.8 |
61.8 |
H181 |
C18 |
C17 |
H171 |
359.9 |
0.1 |
H231 |
C23 |
C24 |
H241 |
359.8 |
0.8 |