PDB Chemical Component BPQ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for BPQ
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C2 |
N1 |
1.324 |
1.364 |
C2 |
N3 |
1.275 |
1.313 |
C2 |
N2 |
1.310 |
1.372 |
N1 |
C6 |
1.319 |
1.352 |
C6 |
O6 |
1.244 |
1.220 |
C6 |
C5 |
1.473 |
1.412 |
C5 |
C7 |
1.466 |
1.462 |
C5 |
C4 |
1.318 |
1.401 |
C7 |
C10 |
1.509 |
1.508 |
C7 |
C8 |
1.349 |
1.342 |
C10 |
N11 |
1.451 |
1.465 |
N11 |
C14 |
1.351 |
1.348 |
C8 |
N9 |
1.317 |
1.372 |
N9 |
C4 |
1.299 |
1.365 |
C4 |
N3 |
1.442 |
1.341 |
C14 |
O15 |
1.220 |
1.215 |
C14 |
O16 |
1.337 |
1.347 |
C20 |
C17 |
1.560 |
1.530 |
C17 |
C19 |
1.556 |
1.530 |
C17 |
C18 |
1.558 |
1.530 |
C17 |
O16 |
1.438 |
1.452 |
N1 |
HN1 |
1.000 |
0.970 |
C10 |
H10 |
1.100 |
1.090 |
C10 |
H10A |
1.100 |
1.090 |
N11 |
HN11 |
1.000 |
0.970 |
C8 |
H8 |
1.080 |
1.080 |
N9 |
HN9 |
1.000 |
0.969 |
N2 |
HN2 |
1.000 |
0.970 |
N2 |
HN2A |
1.000 |
0.971 |
C20 |
H20 |
1.100 |
1.090 |
C20 |
H20A |
1.100 |
1.090 |
C20 |
H20B |
1.100 |
1.090 |
C19 |
H19 |
1.100 |
1.090 |
C19 |
H19A |
1.100 |
1.091 |
C19 |
H19B |
1.100 |
1.089 |
C18 |
H18 |
1.100 |
1.090 |
C18 |
H18A |
1.100 |
1.090 |
C18 |
H18B |
1.100 |
1.090 |
Bond Angles for BPQ
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
N1 |
C2 |
N3 |
122.6 |
122.1 |
N1 |
C2 |
N2 |
118.8 |
118.9 |
C2 |
N1 |
C6 |
125.0 |
120.2 |
C2 |
N1 |
HN1 |
117.5 |
119.8 |
N3 |
C2 |
N2 |
118.7 |
119.0 |
C2 |
N3 |
C4 |
117.4 |
121.2 |
C2 |
N2 |
HN2 |
112.1 |
120.0 |
C2 |
N2 |
HN2A |
123.9 |
120.0 |
N1 |
C6 |
O6 |
122.8 |
120.8 |
N1 |
C6 |
C5 |
115.4 |
118.3 |
C6 |
N1 |
HN1 |
117.5 |
120.0 |
O6 |
C6 |
C5 |
121.8 |
120.9 |
C6 |
C5 |
C7 |
139.1 |
134.6 |
C6 |
C5 |
C4 |
118.0 |
119.1 |
C7 |
C5 |
C4 |
103.0 |
106.3 |
C5 |
C7 |
C10 |
128.2 |
126.6 |
C5 |
C7 |
C8 |
106.7 |
106.7 |
C5 |
C4 |
N9 |
112.2 |
107.3 |
C5 |
C4 |
N3 |
121.7 |
119.2 |
C10 |
C7 |
C8 |
125.1 |
126.6 |
C7 |
C10 |
N11 |
114.4 |
109.5 |
C7 |
C10 |
H10 |
107.9 |
109.5 |
C7 |
C10 |
H10A |
106.7 |
109.5 |
C7 |
C8 |
N9 |
107.6 |
109.7 |
C7 |
C8 |
H8 |
126.2 |
125.2 |
C10 |
N11 |
C14 |
122.9 |
120.0 |
N11 |
C10 |
H10 |
107.8 |
109.5 |
N11 |
C10 |
H10A |
106.7 |
109.5 |
C10 |
N11 |
HN11 |
118.6 |
120.0 |
N11 |
C14 |
O15 |
123.7 |
120.0 |
N11 |
C14 |
O16 |
112.0 |
120.0 |
C14 |
N11 |
HN11 |
118.5 |
120.0 |
C8 |
N9 |
C4 |
110.5 |
110.0 |
N9 |
C8 |
H8 |
126.2 |
125.1 |
C8 |
N9 |
HN9 |
124.7 |
125.0 |
N9 |
C4 |
N3 |
126.1 |
133.5 |
C4 |
N9 |
HN9 |
124.7 |
125.0 |
O15 |
C14 |
O16 |
124.4 |
120.0 |
C14 |
O16 |
C17 |
120.4 |
117.0 |
C20 |
C17 |
C19 |
107.3 |
109.4 |
C20 |
C17 |
C18 |
110.6 |
109.5 |
C20 |
C17 |
O16 |
113.0 |
109.5 |
C17 |
C20 |
H20 |
109.5 |
109.5 |
C17 |
C20 |
H20A |
109.4 |
109.4 |
C17 |
C20 |
H20B |
109.4 |
109.5 |
C19 |
C17 |
C18 |
109.3 |
109.5 |
C19 |
C17 |
O16 |
103.8 |
109.5 |
C17 |
C19 |
H19 |
109.5 |
109.4 |
C17 |
C19 |
H19A |
109.5 |
109.5 |
C17 |
C19 |
H19B |
109.4 |
109.5 |
C18 |
C17 |
O16 |
112.5 |
109.5 |
C17 |
C18 |
H18 |
109.5 |
109.4 |
C17 |
C18 |
H18A |
109.5 |
109.4 |
C17 |
C18 |
H18B |
109.5 |
109.5 |
H10 |
C10 |
H10A |
113.4 |
109.5 |
HN2 |
N2 |
HN2A |
124.0 |
119.9 |
H20 |
C20 |
H20A |
109.5 |
109.4 |
H20 |
C20 |
H20B |
109.5 |
109.5 |
H20A |
C20 |
H20B |
109.5 |
109.5 |
H19 |
C19 |
H19A |
109.4 |
109.4 |
H19 |
C19 |
H19B |
109.5 |
109.5 |
H19A |
C19 |
H19B |
109.5 |
109.5 |
H18 |
C18 |
H18A |
109.5 |
109.5 |
H18 |
C18 |
H18B |
109.4 |
109.5 |
H18A |
C18 |
H18B |
109.5 |
109.5 |
Torsion Angles for BPQ
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
N3 |
C2 |
N1 |
N2 |
180.0 |
180.4 |
N1 |
C2 |
N3 |
C4 |
360.0 |
360.0 |
N1 |
C2 |
N2 |
HN2 |
360.0 |
0.1 |
N1 |
C2 |
N2 |
HN2A |
180.0 |
180.0 |
C2 |
N1 |
C6 |
O6 |
180.0 |
180.0 |
C2 |
N1 |
C6 |
C5 |
0.0 |
360.0 |
C6 |
N1 |
C2 |
HN1 |
180.0 |
180.0 |
N1 |
C2 |
N3 |
N2 |
180.0 |
179.6 |
N3 |
C2 |
N1 |
C6 |
0.0 |
0.1 |
N3 |
C2 |
N1 |
HN1 |
180.0 |
180.0 |
N3 |
C2 |
N2 |
HN2 |
180.0 |
179.7 |
N3 |
C2 |
N2 |
HN2A |
0.0 |
359.6 |
C5 |
C4 |
N3 |
C2 |
0.0 |
360.0 |
N9 |
C4 |
N3 |
C2 |
180.0 |
180.1 |
N1 |
C2 |
N2 |
N3 |
180.0 |
180.4 |
N2 |
C2 |
N1 |
C6 |
180.1 |
179.7 |
N2 |
C2 |
N1 |
HN1 |
0.0 |
359.7 |
N2 |
C2 |
N3 |
C4 |
179.9 |
180.3 |
HN2 |
N2 |
C2 |
HN2A |
180.0 |
180.1 |
C6 |
N1 |
C2 |
N3 |
0.0 |
0.1 |
C6 |
N1 |
C2 |
N2 |
180.1 |
179.7 |
C2 |
N1 |
C6 |
HN1 |
180.0 |
180.0 |
O6 |
C6 |
N1 |
C5 |
180.0 |
180.0 |
N1 |
C6 |
C5 |
C7 |
180.0 |
179.9 |
N1 |
C6 |
C5 |
C4 |
360.0 |
360.0 |
N1 |
C6 |
O6 |
C5 |
180.0 |
180.0 |
O6 |
C6 |
N1 |
HN1 |
0.0 |
0.0 |
O6 |
C6 |
C5 |
C7 |
0.0 |
359.9 |
O6 |
C6 |
C5 |
C4 |
180.0 |
180.0 |
N1 |
C6 |
C5 |
O6 |
180.0 |
180.0 |
C5 |
C6 |
N1 |
HN1 |
180.0 |
180.0 |
C7 |
C5 |
C6 |
C4 |
180.0 |
180.0 |
C6 |
C5 |
C7 |
C10 |
360.0 |
0.0 |
C6 |
C5 |
C7 |
C8 |
180.0 |
180.0 |
C6 |
C5 |
C4 |
N9 |
180.0 |
180.0 |
C6 |
C5 |
C4 |
N3 |
360.0 |
0.1 |
C6 |
C5 |
C7 |
C4 |
180.0 |
180.0 |
C7 |
C5 |
C4 |
N9 |
0.0 |
360.0 |
C7 |
C5 |
C4 |
N3 |
180.0 |
180.1 |
C10 |
C7 |
C5 |
C8 |
180.0 |
180.0 |
C5 |
C7 |
C10 |
N11 |
302.5 |
80.0 |
C5 |
C7 |
C10 |
H10 |
62.6 |
200.0 |
C5 |
C7 |
C10 |
H10A |
184.7 |
320.0 |
C5 |
C7 |
C8 |
N9 |
360.0 |
360.0 |
C5 |
C7 |
C8 |
H8 |
180.0 |
180.0 |
C2 |
N3 |
C4 |
C5 |
0.0 |
360.0 |
C6 |
C5 |
C4 |
C7 |
180.0 |
180.0 |
C4 |
C5 |
C7 |
C10 |
180.0 |
180.0 |
C4 |
C5 |
C7 |
C8 |
0.0 |
0.0 |
C8 |
N9 |
C4 |
C5 |
360.0 |
360.0 |
N9 |
C4 |
C5 |
N3 |
180.0 |
179.9 |
C5 |
C4 |
N9 |
HN9 |
180.0 |
180.0 |
C10 |
C7 |
C5 |
C4 |
180.0 |
180.0 |
C5 |
C7 |
C10 |
C8 |
180.0 |
180.0 |
C10 |
C7 |
C8 |
N9 |
180.0 |
180.0 |
C10 |
C7 |
C8 |
H8 |
360.0 |
0.0 |
C7 |
C10 |
N11 |
C14 |
227.2 |
180.0 |
N11 |
C10 |
C7 |
H10 |
240.0 |
240.0 |
N11 |
C10 |
C7 |
H10A |
117.8 |
120.0 |
C7 |
C10 |
N11 |
HN11 |
47.3 |
360.0 |
H10 |
C10 |
C7 |
H10A |
237.8 |
240.0 |
C8 |
C7 |
C5 |
C4 |
0.0 |
0.0 |
C5 |
C7 |
C8 |
C10 |
180.0 |
180.0 |
C8 |
C7 |
C10 |
N11 |
122.5 |
260.0 |
C8 |
C7 |
C10 |
H10 |
242.5 |
20.0 |
C8 |
C7 |
C10 |
H10A |
4.7 |
140.0 |
C7 |
C8 |
N9 |
C4 |
0.0 |
0.0 |
N9 |
C8 |
C7 |
H8 |
180.0 |
180.0 |
C7 |
C8 |
N9 |
HN9 |
180.0 |
180.0 |
N11 |
C10 |
C7 |
C8 |
122.5 |
260.0 |
C7 |
C10 |
N11 |
H10 |
120.0 |
120.0 |
C7 |
C10 |
N11 |
H10A |
242.2 |
240.0 |
C10 |
N11 |
C14 |
O15 |
356.2 |
0.0 |
C10 |
N11 |
C14 |
O16 |
175.9 |
180.0 |
C14 |
N11 |
C10 |
HN11 |
180.0 |
180.0 |
H10 |
C10 |
N11 |
H10A |
122.2 |
120.0 |
C14 |
N11 |
C10 |
H10 |
107.2 |
60.0 |
C14 |
N11 |
C10 |
H10A |
345.0 |
300.0 |
C10 |
N11 |
C14 |
HN11 |
180.0 |
180.0 |
O15 |
C14 |
N11 |
O16 |
180.2 |
180.1 |
N11 |
C14 |
O16 |
C17 |
182.6 |
180.0 |
C5 |
C4 |
N9 |
C8 |
360.0 |
360.0 |
C7 |
C8 |
N9 |
H8 |
180.0 |
180.0 |
C8 |
N9 |
C4 |
N3 |
180.0 |
179.9 |
C4 |
N9 |
C8 |
HN9 |
180.0 |
180.0 |
C2 |
N3 |
C4 |
N9 |
180.0 |
180.1 |
C5 |
C4 |
N9 |
N3 |
180.0 |
180.1 |
C4 |
N9 |
C8 |
H8 |
180.0 |
180.0 |
C8 |
N9 |
C4 |
HN9 |
180.0 |
180.0 |
C4 |
N3 |
C2 |
N2 |
179.9 |
180.3 |
C5 |
C4 |
N3 |
N9 |
180.0 |
179.9 |
N3 |
C4 |
N9 |
HN9 |
0.0 |
359.9 |
N11 |
C14 |
O15 |
O16 |
179.7 |
179.9 |
O15 |
C14 |
N11 |
HN11 |
176.2 |
180.0 |
O15 |
C14 |
O16 |
C17 |
2.4 |
359.9 |
N11 |
C14 |
O16 |
O15 |
180.2 |
180.1 |
O16 |
C14 |
N11 |
HN11 |
355.9 |
360.0 |
C20 |
C17 |
O16 |
C14 |
309.3 |
60.0 |
C19 |
C17 |
O16 |
C14 |
193.4 |
300.1 |
C18 |
C17 |
O16 |
C14 |
75.4 |
180.0 |
C14 |
O16 |
C17 |
C20 |
309.3 |
60.0 |
C19 |
C17 |
C20 |
C18 |
240.9 |
240.0 |
C19 |
C17 |
C20 |
O16 |
113.8 |
120.0 |
C20 |
C17 |
C19 |
H19 |
260.7 |
60.0 |
C20 |
C17 |
C19 |
H19A |
20.6 |
180.0 |
C20 |
C17 |
C19 |
H19B |
140.7 |
300.0 |
C18 |
C17 |
C20 |
O16 |
232.9 |
240.0 |
C20 |
C17 |
C18 |
H18 |
175.2 |
60.0 |
C20 |
C17 |
C18 |
H18A |
295.2 |
180.0 |
C20 |
C17 |
C18 |
H18B |
55.2 |
300.0 |
H20 |
C20 |
C17 |
H20A |
240.0 |
240.0 |
H20 |
C20 |
C17 |
H20B |
120.0 |
120.1 |
H20A |
C20 |
C17 |
H20B |
240.0 |
240.0 |
C14 |
O16 |
C17 |
C19 |
193.4 |
300.1 |
C20 |
C17 |
C19 |
C18 |
119.9 |
120.0 |
C20 |
C17 |
C19 |
O16 |
240.1 |
240.0 |
C19 |
C17 |
C20 |
H20 |
219.5 |
60.0 |
C19 |
C17 |
C20 |
H20A |
339.5 |
180.0 |
C19 |
C17 |
C20 |
H20B |
99.5 |
299.9 |
C18 |
C17 |
C19 |
O16 |
120.2 |
120.0 |
C19 |
C17 |
C18 |
H18 |
293.1 |
180.0 |
C19 |
C17 |
C18 |
H18A |
53.1 |
300.0 |
C19 |
C17 |
C18 |
H18B |
173.1 |
60.0 |
H19 |
C19 |
C17 |
H19A |
240.0 |
240.1 |
H19 |
C19 |
C17 |
H19B |
120.0 |
120.0 |
H19A |
C19 |
C17 |
H19B |
240.0 |
240.0 |
C14 |
O16 |
C17 |
C18 |
75.4 |
180.0 |
C20 |
C17 |
C18 |
C19 |
242.1 |
240.0 |
C20 |
C17 |
C18 |
O16 |
127.4 |
120.0 |
C18 |
C17 |
C20 |
H20 |
338.6 |
180.0 |
C18 |
C17 |
C20 |
H20A |
98.6 |
300.0 |
C18 |
C17 |
C20 |
H20B |
218.6 |
60.0 |
C19 |
C17 |
C18 |
O16 |
245.3 |
240.0 |
C18 |
C17 |
C19 |
H19 |
140.7 |
300.0 |
C18 |
C17 |
C19 |
H19A |
260.7 |
60.0 |
C18 |
C17 |
C19 |
H19B |
20.7 |
180.0 |
H18 |
C18 |
C17 |
H18A |
240.0 |
240.0 |
H18 |
C18 |
C17 |
H18B |
120.0 |
120.0 |
H18A |
C18 |
C17 |
H18B |
240.0 |
240.0 |
C20 |
C17 |
O16 |
C19 |
115.9 |
120.0 |
C20 |
C17 |
O16 |
C18 |
233.9 |
240.0 |
O16 |
C17 |
C20 |
H20 |
105.7 |
300.1 |
O16 |
C17 |
C20 |
H20A |
225.8 |
60.0 |
O16 |
C17 |
C20 |
H20B |
345.7 |
180.0 |
C19 |
C17 |
O16 |
C18 |
118.0 |
120.0 |
O16 |
C17 |
C19 |
H19 |
20.5 |
180.0 |
O16 |
C17 |
C19 |
H19A |
140.5 |
300.0 |
O16 |
C17 |
C19 |
H19B |
260.5 |
60.0 |
O16 |
C17 |
C18 |
H18 |
47.8 |
300.0 |
O16 |
C17 |
C18 |
H18A |
167.8 |
60.0 |
O16 |
C17 |
C18 |
H18B |
287.8 |
180.0 |
HN1 |
N1 |
C2 |
N3 |
180.0 |
180.0 |
HN1 |
N1 |
C2 |
N2 |
0.0 |
359.7 |
C2 |
N1 |
HN1 |
C6 |
180.0 |
180.0 |
HN1 |
N1 |
C6 |
O6 |
0.0 |
0.0 |
HN1 |
N1 |
C6 |
C5 |
180.0 |
180.0 |
H10 |
C10 |
C7 |
C8 |
242.5 |
20.0 |
C7 |
C10 |
H10 |
N11 |
235.9 |
240.0 |
C7 |
C10 |
H10 |
H10A |
117.9 |
120.0 |
H10 |
C10 |
N11 |
C14 |
107.2 |
60.0 |
N11 |
C10 |
H10 |
H10A |
242.0 |
240.0 |
H10 |
C10 |
N11 |
HN11 |
287.2 |
240.0 |
H10A |
C10 |
C7 |
C8 |
4.7 |
140.0 |
C7 |
C10 |
H10A |
N11 |
122.8 |
120.0 |
C7 |
C10 |
H10A |
H10 |
241.4 |
240.0 |
H10A |
C10 |
N11 |
C14 |
345.0 |
300.0 |
N11 |
C10 |
H10A |
H10 |
118.6 |
120.0 |
H10A |
C10 |
N11 |
HN11 |
165.1 |
120.0 |
C10 |
N11 |
HN11 |
C14 |
180.0 |
180.0 |
HN11 |
N11 |
C10 |
H10 |
287.2 |
240.0 |
HN11 |
N11 |
C10 |
H10A |
165.1 |
120.0 |
HN11 |
N11 |
C14 |
O15 |
176.2 |
180.0 |
HN11 |
N11 |
C14 |
O16 |
355.9 |
360.0 |
C7 |
C8 |
H8 |
N9 |
180.0 |
180.0 |
H8 |
C8 |
N9 |
C4 |
180.0 |
180.0 |
H8 |
C8 |
N9 |
HN9 |
0.0 |
359.9 |
C8 |
N9 |
HN9 |
C4 |
180.0 |
180.0 |
HN9 |
N9 |
C8 |
H8 |
0.0 |
359.9 |
HN9 |
N9 |
C4 |
N3 |
0.0 |
359.9 |
C2 |
N2 |
HN2 |
HN2A |
180.0 |
179.9 |
C2 |
N2 |
HN2A |
HN2 |
180.0 |
180.1 |
H20 |
C20 |
C17 |
C19 |
219.5 |
60.0 |
H20 |
C20 |
C17 |
C18 |
338.6 |
180.0 |
H20 |
C20 |
C17 |
O16 |
105.7 |
300.1 |
C17 |
C20 |
H20 |
H20A |
120.0 |
120.0 |
C17 |
C20 |
H20 |
H20B |
240.0 |
239.9 |
H20A |
C20 |
H20 |
H20B |
120.0 |
120.0 |
H20A |
C20 |
C17 |
C19 |
339.5 |
180.0 |
H20A |
C20 |
C17 |
C18 |
98.6 |
300.0 |
H20A |
C20 |
C17 |
O16 |
225.8 |
60.0 |
C17 |
C20 |
H20A |
H20 |
240.0 |
240.0 |
C17 |
C20 |
H20A |
H20B |
119.9 |
120.0 |
H20 |
C20 |
H20A |
H20B |
240.0 |
240.0 |
H20B |
C20 |
C17 |
C19 |
99.5 |
299.9 |
H20B |
C20 |
C17 |
C18 |
218.6 |
60.0 |
H20B |
C20 |
C17 |
O16 |
345.7 |
180.0 |
C17 |
C20 |
H20B |
H20 |
120.0 |
120.1 |
C17 |
C20 |
H20B |
H20A |
240.0 |
240.1 |
H20 |
C20 |
H20B |
H20A |
120.0 |
120.0 |
H19 |
C19 |
C17 |
C18 |
140.7 |
300.0 |
H19 |
C19 |
C17 |
O16 |
20.5 |
180.0 |
C17 |
C19 |
H19 |
H19A |
120.0 |
119.9 |
C17 |
C19 |
H19 |
H19B |
240.0 |
239.9 |
H19A |
C19 |
H19 |
H19B |
120.0 |
120.0 |
H19A |
C19 |
C17 |
C18 |
260.7 |
60.0 |
H19A |
C19 |
C17 |
O16 |
140.5 |
300.0 |
C17 |
C19 |
H19A |
H19 |
240.0 |
240.1 |
C17 |
C19 |
H19A |
H19B |
120.0 |
120.0 |
H19 |
C19 |
H19A |
H19B |
240.0 |
240.0 |
H19B |
C19 |
C17 |
C18 |
20.7 |
180.0 |
H19B |
C19 |
C17 |
O16 |
260.5 |
60.0 |
C17 |
C19 |
H19B |
H19 |
120.0 |
120.0 |
C17 |
C19 |
H19B |
H19A |
240.0 |
240.0 |
H19 |
C19 |
H19B |
H19A |
120.0 |
120.0 |
H18 |
C18 |
C17 |
O16 |
47.8 |
300.0 |
C17 |
C18 |
H18 |
H18A |
120.0 |
120.0 |
C17 |
C18 |
H18 |
H18B |
240.0 |
240.0 |
H18A |
C18 |
H18 |
H18B |
120.0 |
120.1 |
H18A |
C18 |
C17 |
O16 |
167.8 |
60.0 |
C17 |
C18 |
H18A |
H18 |
240.0 |
240.1 |
C17 |
C18 |
H18A |
H18B |
120.0 |
120.0 |
H18 |
C18 |
H18A |
H18B |
240.0 |
240.0 |
H18B |
C18 |
C17 |
O16 |
287.8 |
180.0 |
C17 |
C18 |
H18B |
H18 |
120.0 |
119.9 |
C17 |
C18 |
H18B |
H18A |
240.0 |
240.0 |
H18 |
C18 |
H18B |
H18A |
120.0 |
120.1 |