PDB Chemical Component BPG

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for BPG

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C3' O3' 1.385 1.429
C3' C2' 1.487 1.529
C3' H3'1 1.115 1.090
C3' H3'2 1.115 1.090
O3' H3' 0.950 0.967
C2' C12 1.472 1.530
C2' H2'1 1.115 1.091
C2' H2'2 1.115 1.089
C12 C1' 1.494 1.529
C12 H121 1.114 1.090
C12 H122 1.114 1.090
C1' N9 1.489 1.465
C1' H1'1 1.116 1.091
C1' H1'2 1.116 1.090
N9 C4 1.406 1.368
N9 C8 1.342 1.365
C4 N3 1.335 1.337
C4 C5 1.365 1.400
N3 C2 1.337 1.314
C2 N2 1.395 1.373
C2 N1 1.370 1.363
N2 C01 1.413 1.398
N2 HN21 1.019 0.970
N1 C6 1.389 1.351
N1 HN1 1.020 0.970
C6 O6 1.230 1.219
C6 C5 1.406 1.415
C5 N7 1.391 1.354
N7 C8 1.293 1.301
C8 H8 1.103 1.079
C04 C05 1.388 1.382
C04 C03 1.397 1.383
C04 H041 1.103 1.079
C05 C06 1.392 1.381
C05 H051 1.103 1.080
C06 C01 1.395 1.389
C06 H061 1.103 1.079
C01 C02 1.379 1.389
C02 C03 1.391 1.380
C02 H021 1.103 1.080
C03 H031 1.103 1.081

Bond Angles for BPG

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O3' C3' C2' 93.8 109.5
O3' C3' H3'1 118.4 109.5
O3' C3' H3'2 118.3 109.4
C3' O3' H3' 93.9 106.8
C2' C3' H3'1 118.4 109.4
C2' C3' H3'2 118.4 109.5
C3' C2' C12 105.5 109.5
C3' C2' H2'1 113.7 109.5
C3' C2' H2'2 113.7 109.5
H3'1 C3' H3'2 91.9 109.6
C12 C2' H2'1 113.7 109.4
C12 C2' H2'2 113.7 109.4
C2' C12 C1' 105.9 109.5
C2' C12 H121 113.5 109.4
C2' C12 H122 113.5 109.5
H2'1 C2' H2'2 96.8 109.5
C1' C12 H121 113.6 109.4
C1' C12 H122 113.5 109.5
C12 C1' N9 104.9 109.5
C12 C1' H1'1 113.9 109.4
C12 C1' H1'2 114.0 109.5
H121 C12 H122 97.0 109.5
N9 C1' H1'1 114.0 109.4
N9 C1' H1'2 114.0 109.5
C1' N9 C4 127.6 126.2
C1' N9 C8 129.1 126.2
H1'1 C1' H1'2 96.5 109.5
C4 N9 C8 103.3 107.5
N9 C4 N3 125.7 134.2
N9 C4 C5 107.0 106.1
N9 C8 N7 116.4 109.8
N9 C8 H8 123.5 125.2
N3 C4 C5 127.3 119.7
C4 N3 C2 113.7 121.1
C4 C5 C6 120.4 118.5
C4 C5 N7 109.5 107.3
N3 C2 N2 117.4 119.0
N3 C2 N1 121.8 121.9
N2 C2 N1 120.8 119.1
C2 N2 C01 128.9 120.0
C2 N2 HN21 105.5 120.0
C2 N1 C6 125.9 120.3
C2 N1 HN1 116.2 119.8
C01 N2 HN21 105.4 120.0
N2 C01 C06 123.0 120.1
N2 C01 C02 117.3 120.0
C6 N1 HN1 117.8 119.8
N1 C6 O6 122.7 120.8
N1 C6 C5 110.9 118.4
O6 C6 C5 126.3 120.8
C6 C5 N7 130.1 134.2
C5 N7 C8 103.8 109.4
N7 C8 H8 120.1 125.1
C05 C04 C03 119.7 120.1
C05 C04 H041 119.8 119.9
C04 C05 C06 119.7 120.1
C04 C05 H051 120.0 120.0
C03 C04 H041 120.4 120.0
C04 C03 C02 120.2 120.1
C04 C03 H031 120.1 119.9
C06 C05 H051 120.3 120.0
C05 C06 C01 120.5 119.9
C05 C06 H061 119.6 120.0
C01 C06 H061 119.9 120.0
C06 C01 C02 119.7 119.8
C01 C02 C03 120.1 119.9
C01 C02 H021 119.6 120.0
C03 C02 H021 120.3 120.0
C02 C03 H031 119.7 120.0

Torsion Angles for BPG

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2' C3' O3' H3'1 234.7 240.1
C2' C3' O3' H3'2 125.3 120.0
O3' C3' C2' C12 164.7 180.0
O3' C3' C2' H2'1 289.9 300.0
O3' C3' C2' H2'2 39.4 60.0
H3'1 C3' O3' H3'2 250.6 239.9
O3' C3' C2' H3'1 125.3 120.0
O3' C3' C2' H3'2 234.8 240.1
C2' C3' O3' H3' 180.0 180.1
H3'1 C3' C2' H3'2 109.5 120.1
C12 C2' C3' H2'1 234.7 240.1
C12 C2' C3' H2'2 125.3 120.0
C3' C2' C12 C1' 72.3 180.0
C3' C2' C12 H121 197.6 299.9
C3' C2' C12 H122 307.1 60.0
H2'1 C2' C3' H2'2 250.6 240.0
O3' C3' H3'1 C2' 247.8 240.1
O3' C3' H3'1 H3'2 123.9 120.0
H3'1 C3' O3' H3' 305.2 300.0
C2' C3' H3'1 H3'2 236.1 239.9
H3'1 C3' C2' C12 39.4 60.1
H3'1 C3' C2' H2'1 164.7 180.0
H3'1 C3' C2' H2'2 274.1 300.1
O3' C3' H3'2 C2' 112.2 120.0
O3' C3' H3'2 H3'1 236.1 240.0
H3'2 C3' O3' H3' 54.7 60.1
C2' C3' H3'2 H3'1 123.9 120.0
H3'2 C3' C2' C12 289.9 300.0
H3'2 C3' C2' H2'1 55.2 59.9
H3'2 C3' C2' H2'2 164.6 180.0
H3' O3' C3' C2' 180.0 180.1
H3' O3' C3' H3'1 305.2 300.0
H3' O3' C3' H3'2 54.7 60.1
C12 C2' C3' H3'1 39.4 60.1
C12 C2' C3' H3'2 289.9 300.0
C3' C2' C12 H2'1 125.3 120.0
C3' C2' C12 H2'2 234.8 239.9
H2'1 C2' C12 H2'2 109.5 119.9
C1' C12 C2' H121 234.7 240.1
C1' C12 C2' H122 125.2 120.0
C2' C12 C1' N9 184.0 180.0
C2' C12 C1' H1'1 309.3 299.9
C2' C12 C1' H1'2 58.7 59.9
H121 C12 C2' H122 250.5 239.9
H2'1 C2' C3' H3'1 164.7 180.0
H2'1 C2' C3' H3'2 55.2 59.9
C3' C2' H2'1 C12 239.2 240.0
C3' C2' H2'1 H2'2 119.6 120.1
C12 C2' H2'1 H2'2 240.3 240.1
H2'1 C2' C12 C1' 307.0 60.0
H2'1 C2' C12 H121 72.3 180.0
H2'1 C2' C12 H122 181.8 300.0
H2'2 C2' C3' H3'1 274.1 300.1
H2'2 C2' C3' H3'2 164.6 180.0
C3' C2' H2'2 C12 120.8 120.1
C3' C2' H2'2 H2'1 240.4 240.0
C12 C2' H2'2 H2'1 119.6 119.9
H2'2 C2' C12 C1' 197.5 300.1
H2'2 C2' C12 H121 322.8 60.0
H2'2 C2' C12 H122 72.3 180.1
C1' C12 C2' H2'1 307.0 60.0
C1' C12 C2' H2'2 197.5 300.1
C2' C12 C1' H121 125.3 119.9
C2' C12 C1' H122 234.8 240.0
H121 C12 C1' H122 109.5 120.0
N9 C1' C12 H1'1 234.7 240.0
N9 C1' C12 H1'2 125.3 120.0
C12 C1' N9 C4 87.9 269.8
C12 C1' N9 C8 266.6 90.0
H1'1 C1' C12 H1'2 250.6 240.0
H121 C12 C2' H2'1 72.3 180.0
H121 C12 C2' H2'2 322.8 60.0
C2' C12 H121 C1' 238.9 240.0
C2' C12 H121 H122 119.4 120.0
C1' C12 H121 H122 240.5 240.0
H121 C12 C1' N9 58.8 60.1
H121 C12 C1' H1'1 184.0 180.0
H121 C12 C1' H1'2 293.4 300.0
H122 C12 C2' H2'1 181.8 300.0
H122 C12 C2' H2'2 72.3 180.1
C2' C12 H122 C1' 121.0 120.1
C2' C12 H122 H121 240.5 240.0
C1' C12 H122 H121 119.5 120.0
H122 C12 C1' N9 309.2 300.0
H122 C12 C1' H1'1 74.5 60.0
H122 C12 C1' H1'2 183.9 180.0
N9 C1' C12 H121 58.8 60.1
N9 C1' C12 H122 309.2 300.0
C12 C1' N9 H1'1 125.2 120.0
C12 C1' N9 H1'2 234.7 239.9
H1'1 C1' N9 H1'2 109.4 120.0
C4 N9 C1' C8 181.3 179.8
C1' N9 C4 N3 359.7 0.7
C1' N9 C4 C5 178.7 179.8
C1' N9 C8 N7 181.1 180.1
C1' N9 C8 H8 1.0 360.0
H1'1 C1' C12 H121 184.0 180.0
H1'1 C1' C12 H122 74.5 60.0
C12 C1' H1'1 N9 239.7 240.0
C12 C1' H1'1 H1'2 119.8 120.0
N9 C1' H1'1 H1'2 240.1 240.0
H1'1 C1' N9 C4 322.6 149.8
H1'1 C1' N9 C8 141.3 330.0
H1'2 C1' C12 H121 293.4 300.0
H1'2 C1' C12 H122 183.9 180.0
C12 C1' H1'2 N9 120.3 120.1
C12 C1' H1'2 H1'1 240.2 240.0
N9 C1' H1'2 H1'1 119.9 120.0
H1'2 C1' N9 C4 213.2 29.8
H1'2 C1' N9 C8 31.9 210.0
C4 N9 C1' H1'1 322.6 149.8
C4 N9 C1' H1'2 213.2 29.8
C1' N9 C4 C8 179.0 180.2
C4 N9 C8 N7 0.0 0.2
C4 N9 C8 H8 180.0 180.2
N3 C4 N9 C5 181.0 180.9
N9 C4 N3 C2 178.0 179.7
N9 C4 C5 C6 182.5 180.1
N9 C4 C5 N7 0.4 0.4
C8 N9 C1' H1'1 141.3 330.0
C8 N9 C1' H1'2 31.9 210.0
C1' N9 C8 C4 181.0 179.8
C8 N9 C4 N3 180.7 180.5
C8 N9 C4 C5 359.7 359.6
C5 N7 C8 N9 0.3 0.0
N7 C8 N9 H8 180.0 180.1
N3 C4 N9 C8 180.7 180.5
N9 C4 N3 C5 178.9 179.0
N3 C4 C5 C6 1.5 359.3
N3 C4 C5 N7 179.5 179.7
C4 N3 C2 N2 182.4 179.6
C4 N3 C2 N1 0.2 359.6
C5 C4 N9 C8 359.7 359.6
N9 C4 C5 N3 181.0 180.7
C5 C4 N3 C2 359.1 0.7
N1 C6 C5 C4 358.8 0.3
O6 C6 C5 C4 180.0 180.3
C6 C5 C4 N7 182.0 179.7
C4 C5 N7 C8 359.6 359.7
C2 N3 C4 C5 359.1 0.7
N2 C2 N3 N1 182.1 180.0
N3 C2 N2 C01 5.2 354.4
N3 C2 N2 HN21 240.0 174.3
N3 C2 N1 C6 359.8 0.0
N3 C2 N1 HN1 179.8 180.1
N3 C2 N2 N1 177.9 180.0
N2 C2 N1 C6 177.6 180.0
N2 C2 N1 HN1 357.6 0.1
C01 N2 C2 HN21 125.2 180.0
C2 N2 C01 C06 12.4 146.2
C2 N2 C01 C02 192.5 326.0
N3 C2 N1 N2 182.2 180.0
N1 C2 N2 C01 187.4 174.4
N1 C2 N2 HN21 62.1 354.3
C6 N1 C2 HN1 180.0 179.9
C2 N1 C6 O6 179.5 180.0
C2 N1 C6 C5 0.7 360.0
C01 N2 C2 N1 187.4 174.4
C2 N2 C01 HN21 234.7 180.0
C05 C06 C01 N2 182.4 180.0
N2 C01 C06 H061 2.4 360.0
C06 C01 N2 C02 179.9 180.2
N2 C01 C02 C03 177.9 179.7
N2 C01 C02 H021 357.8 0.2
HN21 N2 C2 N1 62.1 354.3
C2 N2 HN21 C01 138.7 180.0
HN21 N2 C01 C06 137.6 326.2
HN21 N2 C01 C02 317.7 146.0
C4 C5 C6 N1 358.8 0.3
C2 N1 C6 HN1 180.0 180.1
O6 C6 N1 C5 178.8 180.0
N1 C6 C5 N7 181.3 179.9
C2 N1 HN1 C6 180.0 179.9
HN1 N1 C6 O6 359.4 359.9
HN1 N1 C6 C5 180.6 179.9
C4 C5 C6 O6 180.0 180.3
O6 C6 N1 HN1 359.4 359.9
N1 C6 O6 C5 181.4 180.0
O6 C6 C5 N7 2.5 359.9
C4 C5 C6 N7 177.5 180.4
C5 C6 N1 HN1 180.6 179.9
N1 C6 C5 O6 178.7 180.0
C6 C5 N7 C8 177.3 180.1
N9 C8 N7 C5 0.3 0.0
C4 C5 N7 C6 182.3 179.6
C5 N7 C8 H8 180.3 180.1
N9 C8 N7 H8 180.0 179.9
N9 C8 H8 N7 180.0 180.1
C03 C04 C05 H041 180.0 180.0
C05 C04 C03 C02 359.7 359.8
C05 C04 C03 H031 179.7 180.1
C06 C05 C04 H051 180.0 179.9
C04 C05 C06 C01 358.5 0.1
C04 C05 C06 H061 178.5 180.1
C05 C04 C03 H041 180.0 180.0
C03 C04 C05 C06 0.5 359.9
C03 C04 C05 H051 180.4 180.0
C01 C02 C03 C04 1.1 0.5
C04 C03 C02 H021 181.1 180.0
C02 C03 C04 H031 180.0 179.7
C05 C04 H041 C03 180.0 180.0
H041 C04 C05 C06 180.5 180.0
H041 C04 C05 H051 0.4 0.0
H041 C04 C03 C02 179.7 179.8
H041 C04 C03 H031 359.7 0.0
N2 C01 C06 C05 182.4 180.0
C06 C05 C04 C03 0.5 359.9
C06 C05 C04 H041 180.5 180.0
C04 C05 C06 H051 180.0 180.1
C01 C06 C05 H061 180.0 180.0
C05 C06 C01 C02 2.3 0.2
H051 C05 C04 C03 180.4 180.0
H051 C05 C04 H041 0.4 0.0
C04 C05 H051 C06 180.0 179.9
H051 C05 C06 C01 178.6 180.0
H051 C05 C06 H061 358.6 360.0
C06 C01 N2 HN21 137.6 326.2
N2 C01 C06 C02 180.1 179.8
C01 C06 C05 H051 178.6 180.0
C05 C06 C01 H061 180.0 180.0
C06 C01 C02 C03 357.9 359.5
C06 C01 C02 H021 177.9 180.0
H061 C06 C05 H051 358.6 360.0
C05 C06 H061 C01 180.0 180.0
H061 C06 C01 C02 182.3 180.2
C02 C01 N2 HN21 317.7 146.0
N2 C01 C02 C06 179.9 180.2
C04 C03 C02 C01 1.1 0.5
C02 C01 C06 H061 182.3 180.2
C03 C02 C01 H021 180.0 179.5
C01 C02 C03 H031 181.1 180.2
C02 C03 C04 H041 179.7 179.8
C04 C03 C02 H031 180.0 180.3
C01 C02 C03 H021 180.0 180.5
C01 C02 H021 C03 180.0 179.5
H021 C02 C03 H031 1.1 359.8
H031 C03 C04 H041 359.7 0.0
C04 C03 H031 C02 180.0 179.7
H031 C03 C02 H021 1.1 359.8