PDB Chemical Component BPD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for BPD

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
F1	C1	1.317	1.399
F2	C1	1.322	1.398
F3	C1	1.308	1.400
O1	C13	1.399	1.343
O1	C21	1.394	1.343
O2	C14	1.201	1.215
O3	C14	1.315	1.348
O3	HO3	0.950	0.967
O4	C22	1.186	1.215
O5	C22	1.344	1.347
O5	HO5	0.951	0.967
N1	C6	1.484	1.397
N1	C8	1.462	1.406
N1	C16	1.462	1.406
C1	C2	1.499	1.506
C2	C3	1.416	1.382
C2	C7	1.426	1.381
C3	C4	1.398	1.383
C3	H3	1.102	1.081
C4	C5	1.409	1.381
C4	H4	1.103	1.079
C5	C6	1.413	1.390
C5	H5	1.104	1.079
C6	C7	1.429	1.389
C7	H7	1.103	1.080
C8	C9	1.421	1.382
C8	C13	1.440	1.392
C9	C10	1.413	1.387
C9	H9	1.103	1.080
C10	C11	1.381	1.376
C10	H10	1.103	1.079
C11	C12	1.421	1.397
C11	H11	1.104	1.080
C12	C13	1.440	1.408
C12	C14	1.520	1.473
C16	C17	1.424	1.382
C16	C21	1.447	1.392
C17	C18	1.405	1.386
C17	H17	1.103	1.079
C18	C19	1.386	1.377
C18	H18	1.103	1.080
C19	C20	1.421	1.396
C19	H19	1.103	1.081
C20	C21	1.449	1.408
C20	C22	1.517	1.474

Bond Angles for BPD

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
F1	C1	F2	105.3	109.5
F1	C1	F3	107.8	109.5
F1	C1	C2	111.7	109.5
F2	C1	F3	107.7	109.5
F2	C1	C2	112.3	109.5
F3	C1	C2	111.6	109.4
C13	O1	C21	121.5	114.9
O1	C13	C8	120.3	123.1
O1	C13	C12	118.9	118.5
O1	C21	C16	120.7	123.1
O1	C21	C20	118.8	118.5
O2	C14	O3	121.2	120.0
O2	C14	C12	123.4	120.0
C14	O3	HO3	121.1	120.0
O3	C14	C12	115.5	120.0
O4	C22	O5	121.8	120.0
O4	C22	C20	126.7	120.0
C22	O5	HO5	121.8	120.1
O5	C22	C20	111.5	120.0
C6	N1	C8	119.9	122.2
C6	N1	C16	118.6	122.3
N1	C6	C5	119.0	120.1
N1	C6	C7	121.2	120.1
C8	N1	C16	118.8	115.5
N1	C8	C9	122.9	120.3
N1	C8	C13	119.0	118.7
N1	C16	C17	123.7	120.3
N1	C16	C21	118.4	118.6
C1	C2	C3	120.6	120.0
C1	C2	C7	119.3	120.0
C3	C2	C7	120.0	120.0
C2	C3	C4	120.0	120.2
C2	C3	H3	120.6	119.9
C2	C7	C6	119.2	120.0
C2	C7	H7	120.3	120.0
C4	C3	H3	119.3	119.9
C3	C4	C5	120.9	120.0
C3	C4	H4	119.2	120.0
C5	C4	H4	120.0	120.0
C4	C5	C6	120.0	119.9
C4	C5	H5	119.9	120.0
C6	C5	H5	120.1	120.1
C5	C6	C7	119.9	119.8
C6	C7	H7	120.5	120.0
C9	C8	C13	118.1	121.0
C8	C9	C10	121.1	120.2
C8	C9	H9	119.8	119.9
C8	C13	C12	120.8	118.4
C10	C9	H9	119.1	119.9
C9	C10	C11	120.1	119.9
C9	C10	H10	121.1	120.1
C11	C10	H10	118.8	120.0
C10	C11	C12	122.2	120.4
C10	C11	H11	117.4	119.8
C12	C11	H11	120.4	119.8
C11	C12	C13	117.7	120.0
C11	C12	C14	115.3	120.0
C13	C12	C14	127.0	120.0
C17	C16	C21	117.9	121.1
C16	C17	C18	121.1	120.2
C16	C17	H17	120.1	119.9
C16	C21	C20	120.5	118.4
C18	C17	H17	118.8	119.9
C17	C18	C19	121.1	119.9
C17	C18	H18	120.1	120.1
C19	C18	H18	118.8	120.0
C18	C19	C20	121.3	120.4
C18	C19	H19	118.1	119.8
C20	C19	H19	120.6	119.8
C19	C20	C21	118.2	120.0
C19	C20	C22	117.5	120.0
C21	C20	C22	124.3	120.0

Torsion Angles for BPD

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
F2	C1	F1	F3	245.2	120.0
F2	C1	F1	C2	122.2	239.9
F3	C1	F1	C2	237.0	119.9
F1	C1	C2	C3	113.8	359.9
F1	C1	C2	C7	293.7	180.3
F1	C1	F2	F3	114.9	240.0
F1	C1	F2	C2	238.2	120.1
F3	C1	F2	C2	123.3	240.1
F2	C1	C2	C3	355.8	120.0
F2	C1	C2	C7	175.6	300.3
F1	C1	F3	F2	246.8	120.0
F1	C1	F3	C2	123.0	240.0
F2	C1	F3	C2	236.2	120.0
F3	C1	C2	C3	234.6	240.0
F3	C1	C2	C7	54.5	60.3
C13	O1	C21	C16	350.7	338.4
C13	O1	C21	C20	170.7	159.6
N1	C8	C13	O1	0.0	357.6
C9	C8	C13	O1	180.1	178.4
C8	C13	O1	C12	180.0	181.1
C11	C12	C13	O1	180.0	181.3
O1	C13	C12	C14	359.9	1.6
C21	O1	C13	C8	9.3	21.7
C21	O1	C13	C12	189.3	200.6
N1	C16	C21	O1	359.9	2.2
C17	C16	C21	O1	180.1	182.1
C16	C21	O1	C20	180.0	178.7
C19	C20	C21	O1	180.0	178.2
O1	C21	C20	C22	0.0	358.2
O2	C14	O3	HO3	180.0	360.0
O3	C14	O2	C12	180.2	180.0
C11	C12	C14	O2	2.1	180.0
C13	C12	C14	O2	182.2	359.7
O2	C14	O3	C12	179.8	180.0
C11	C12	C14	O3	181.9	359.9
C13	C12	C14	O3	2.0	179.7
HO3	O3	C14	C12	0.2	180.0
O4	C22	O5	HO5	180.0	0.1
O5	C22	O4	C20	179.9	179.9
C19	C20	C22	O4	3.0	180.0
C21	C20	C22	O4	183.0	0.0
O4	C22	O5	C20	180.1	180.1
C19	C20	C22	O5	183.1	0.0
C21	C20	C22	O5	3.0	180.1
HO5	O5	C22	C20	359.9	180.0
C8	N1	C6	C16	161.2	179.9
C6	N1	C8	C9	9.6	342.0
C6	N1	C8	C13	189.7	162.8
C6	N1	C16	C17	350.3	17.4
C6	N1	C16	C21	170.5	197.3
C2	C7	C6	N1	180.0	179.7
C4	C5	C6	N1	180.0	180.0
N1	C6	C5	H5	360.0	360.0
C5	C6	N1	C7	180.0	180.2
N1	C6	C7	H7	0.0	0.3
O1	C13	C8	N1	0.0	357.6
C6	N1	C8	C16	198.8	180.1
C8	N1	C6	C5	260.5	270.2
C8	N1	C6	C7	80.4	90.0
C8	N1	C16	C17	188.9	197.5
C8	N1	C16	C21	9.1	17.4
C9	C8	N1	C13	179.9	179.2
N1	C8	C9	C10	180.0	181.1
N1	C8	C9	H9	359.9	1.0
N1	C8	C13	C12	180.1	178.7
O1	C21	C16	N1	359.9	2.2
C6	N1	C16	C8	161.4	179.9
C16	N1	C6	C5	99.2	90.3
C16	N1	C6	C7	279.2	270.0
C16	N1	C8	C9	170.8	161.9
C16	N1	C8	C13	350.9	342.7
C17	C16	N1	C21	179.8	180.1
N1	C16	C17	C18	180.1	179.3
N1	C16	C17	H17	0.1	359.4
N1	C16	C21	C20	179.9	181.0
F1	C1	C2	F2	118.0	240.0
F1	C1	C2	F3	239.2	120.0
F2	C1	C2	F3	121.1	240.0
C3	C2	C1	C7	180.1	179.7
C1	C2	C3	C4	179.9	180.0
C1	C2	C3	H3	359.9	0.1
C1	C2	C7	C6	180.1	180.2
C1	C2	C7	H7	0.1	359.7
C1	C2	C3	C7	179.9	180.3
C3	C2	C7	C6	360.0	0.6
C3	C2	C7	H7	180.0	180.0
C4	C3	C2	H3	180.1	179.9
C2	C3	C4	C5	359.9	0.0
C2	C3	C4	H4	179.9	180.0
N1	C6	C7	C2	180.0	179.7
C1	C2	C7	C3	180.1	179.7
C7	C2	C3	C4	0.0	359.7
C7	C2	C3	H3	180.0	179.8
C5	C6	C7	C2	360.0	359.5
C6	C7	C2	H7	180.0	180.6
C4	C3	C2	C7	0.0	359.7
C2	C3	C4	H3	179.9	180.1
C5	C4	C3	H4	180.1	180.0
C3	C4	C5	C6	0.0	0.0
C3	C4	C5	H5	180.0	180.0
H3	C3	C2	C7	180.0	179.8
C2	C3	H3	C4	180.1	179.9
H3	C3	C4	C5	180.0	180.0
H3	C3	C4	H4	359.9	359.9
N1	C6	C5	C4	180.0	180.0
C5	C4	C3	H3	180.0	180.0
C3	C4	C5	H4	179.9	180.0
C6	C5	C4	H5	180.0	180.0
C4	C5	C6	C7	0.0	0.2
H4	C4	C3	H3	359.9	359.9
C3	C4	H4	C5	180.1	180.0
H4	C4	C5	C6	180.1	180.0
H4	C4	C5	H5	0.1	0.1
C5	C6	N1	C8	260.5	270.2
C5	C6	N1	C16	99.2	90.3
N1	C6	C5	C7	180.0	179.8
C2	C7	C6	C5	360.0	359.5
C6	C5	C4	H4	180.1	180.0
C4	C5	C6	H5	180.0	180.0
C5	C6	C7	H7	180.0	180.0
H5	C5	C4	H4	0.1	0.1
C4	C5	H5	C6	180.0	180.0
H5	C5	C6	C7	180.0	180.2
C7	C6	N1	C8	80.4	90.0
C7	C6	N1	C16	279.2	270.0
N1	C6	C7	C5	180.0	180.2
C2	C7	C6	H7	180.0	179.4
C7	C6	C5	H5	180.0	180.2
C2	C7	H7	C6	180.0	180.6
O1	C13	C8	C9	180.1	178.4
C9	C8	N1	C16	170.8	161.9
N1	C8	C9	C13	180.1	180.8
C9	C8	C13	C12	0.2	359.5
C10	C9	C8	H9	180.0	180.1
C8	C9	C10	C11	0.0	0.1
C8	C9	C10	H10	180.1	180.2
C8	C13	O1	C21	9.3	21.7
O1	C13	C8	C12	180.0	178.9
C13	C8	N1	C16	350.9	342.7
N1	C8	C13	C9	179.9	179.2
C13	C8	C9	C10	359.8	0.3
C13	C8	C9	H9	179.8	180.2
C11	C12	C13	C8	359.9	0.2
C8	C13	C12	C14	179.9	180.5
C10	C9	C8	C13	359.8	0.3
C8	C9	C10	H9	180.0	179.9
C11	C10	C9	H10	180.0	180.0
C9	C10	C11	C12	0.1	359.6
C9	C10	C11	H11	180.1	179.6
H9	C9	C8	C13	179.8	180.2
C8	C9	H9	C10	180.0	180.1
H9	C9	C10	C11	180.1	180.2
H9	C9	C10	H10	0.1	0.2
C11	C10	C9	H9	180.1	180.2
C9	C10	C11	H10	180.0	180.0
C12	C11	C10	H11	180.0	180.1
C10	C11	C12	C13	359.9	0.2
C10	C11	C12	C14	180.0	179.9
H10	C10	C9	H9	0.1	0.2
C9	C10	H10	C11	180.0	180.0
H10	C10	C11	C12	180.1	179.6
H10	C10	C11	H11	0.1	359.6
O1	C13	C12	C11	180.0	181.3
O2	C14	C12	C11	2.1	180.0
O3	C14	C12	C11	181.9	359.9
C8	C13	C12	C11	359.9	0.2
C12	C11	C10	H10	180.1	179.6
C10	C11	C12	H11	180.0	179.9
C13	C12	C11	C14	179.9	180.2
H11	C11	C10	H10	0.1	359.6
C10	C11	H11	C12	180.0	180.1
H11	C11	C12	C13	179.9	180.2
H11	C11	C12	C14	360.0	360.0
C12	C13	O1	C21	189.3	200.6
O1	C13	C12	C8	180.0	181.1
O2	C14	C12	C13	182.2	359.7
O3	C14	C12	C13	2.0	179.7
C13	C12	C11	H11	179.9	180.2
C11	C12	C13	C14	180.1	179.8
O2	C14	C12	O3	180.2	180.0
C12	C14	O3	HO3	0.2	180.0
C14	C12	C11	H11	360.0	360.0
C11	C12	C14	C13	179.9	180.2
O1	C21	C16	C17	180.1	182.1
N1	C16	C17	C21	180.2	179.9
C17	C16	C21	C20	0.1	0.9
C18	C17	C16	H17	180.0	179.9
C16	C17	C18	C19	0.1	0.0
C16	C17	C18	H18	180.1	180.0
O1	C21	C16	C20	180.0	181.3
N1	C16	C21	C17	179.8	180.1
C21	C16	C17	C18	359.9	359.4
C21	C16	C17	H17	179.9	179.5
C19	C20	C21	C16	0.0	359.4
C16	C21	C20	C22	180.0	179.4
C18	C17	C16	C21	359.9	359.4
C16	C17	C18	H17	180.0	180.1
C19	C18	C17	H18	180.0	180.0
C17	C18	C19	C20	360.0	0.3
C17	C18	C19	H19	180.0	180.2
H17	C17	C16	C21	179.9	179.5
C16	C17	H17	C18	180.0	179.9
H17	C17	C18	C19	180.1	179.9
H17	C17	C18	H18	0.1	359.9
C19	C18	C17	H17	180.1	179.9
C17	C18	C19	H18	180.0	180.0
C20	C19	C18	H19	180.0	180.0
C18	C19	C20	C21	360.0	0.0
C18	C19	C20	C22	179.9	180.1
H18	C18	C17	H17	0.1	359.9
C17	C18	H18	C19	180.0	180.0
H18	C18	C19	C20	180.0	180.3
H18	C18	C19	H19	360.0	0.3
O1	C21	C20	C19	180.0	178.2
O4	C22	C20	C19	3.0	180.0
O5	C22	C20	C19	183.1	0.0
C16	C21	C20	C19	0.0	359.4
C20	C19	C18	H18	180.0	180.3
C18	C19	C20	H19	180.0	180.0
C21	C20	C19	C22	180.0	180.0
H19	C19	C18	H18	360.0	0.3
C18	C19	H19	C20	180.0	180.0
H19	C19	C20	C21	180.0	180.1
H19	C19	C20	C22	360.0	0.1
O1	C21	C20	C16	180.0	178.8
O4	C22	C20	C21	183.0	0.0
O5	C22	C20	C21	3.0	180.1
C21	C20	C19	H19	180.0	180.1
C19	C20	C21	C22	180.0	180.0
O4	C22	C20	O5	179.9	179.9
C20	C22	O5	HO5	359.9	180.0
C22	C20	C19	H19	360.0	0.1
C19	C20	C22	C21	180.0	180.0