PDB Chemical Component BO1

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for BO1

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
S1	O1	1.436	1.421
S1	O2A	1.436	1.421
S1	N1	1.599	1.657
S1	C1A	1.755	1.762
N1	HN11	1.000	0.970
N1	HN12	1.000	0.969
C1A	C2A	1.418	1.382
C1A	C6A	1.412	1.382
C2A	C3A	1.391	1.382
C2A	H2A	1.080	1.080
C3A	C4A	1.439	1.389
C3A	H3A	1.079	1.079
C4A	C5A	1.419	1.389
C4A	N2	1.390	1.397
C5A	C6A	1.385	1.381
C5A	H5A	1.080	1.080
C6A	H6	1.079	1.079
N2	C1	1.419	1.466
N2	HN2	1.000	0.970
C1	C2	1.530	1.531
C1	O5	1.477	1.425
C1	H1	1.100	1.090
C2	C3	1.531	1.533
C2	O2	1.432	1.428
C2	H2	1.100	1.091
C3	C4	1.514	1.534
C3	O3	1.427	1.430
C3	H3	1.100	1.089
C4	C5	1.552	1.530
C4	O4	1.432	1.429
C4	H4	1.100	1.091
C5	C6	1.502	1.530
C5	O5	1.464	1.426
C5	H5	1.100	1.090
C6	O6	1.423	1.429
C6	H61	1.100	1.090
C6	H62	1.100	1.090
O2	HO2	0.950	0.967
O3	HO3	0.950	0.967
O4	HO4	0.950	0.967
O6	HO6	0.949	0.967

Bond Angles for BO1

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O1	S1	O2A	118.6	125.4
O1	S1	N1	107.3	105.7
O1	S1	C1A	106.1	105.8
O2A	S1	N1	108.4	105.8
O2A	S1	C1A	107.5	105.8
N1	S1	C1A	108.6	107.4
S1	N1	HN11	109.4	120.0
S1	N1	HN12	109.5	120.0
S1	C1A	C2A	121.2	119.9
S1	C1A	C6A	119.4	119.9
HN11	N1	HN12	109.5	120.1
C2A	C1A	C6A	119.4	120.2
C1A	C2A	C3A	120.1	120.1
C1A	C2A	H2A	119.9	120.0
C1A	C6A	C5A	120.7	120.0
C1A	C6A	H6	119.6	120.0
C3A	C2A	H2A	120.0	119.9
C2A	C3A	C4A	120.7	119.9
C2A	C3A	H3A	119.6	120.0
C4A	C3A	H3A	119.6	120.1
C3A	C4A	C5A	118.0	119.8
C3A	C4A	N2	123.1	120.1
C5A	C4A	N2	118.9	120.1
C4A	C5A	C6A	121.0	120.0
C4A	C5A	H5A	119.5	120.0
C4A	N2	C1	126.2	120.0
C4A	N2	HN2	104.2	120.0
C6A	C5A	H5A	119.5	120.0
C5A	C6A	H6	119.6	120.0
C1	N2	HN2	104.2	120.0
N2	C1	C2	110.8	109.4
N2	C1	O5	109.8	109.4
N2	C1	H1	108.4	109.4
C2	C1	O5	109.8	109.8
C2	C1	H1	108.5	109.4
C1	C2	C3	109.3	109.0
C1	C2	O2	107.6	109.6
C1	C2	H2	111.5	109.6
O5	C1	H1	109.5	109.4
C1	O5	C5	113.0	107.7
C3	C2	O2	111.3	109.5
C3	C2	H2	107.8	109.5
C2	C3	C4	108.8	108.6
C2	C3	O3	108.9	109.7
C2	C3	H3	110.5	109.7
O2	C2	H2	109.4	109.6
C2	O2	HO2	109.5	106.8
C4	C3	O3	109.9	109.6
C4	C3	H3	109.5	109.6
C3	C4	C5	108.9	109.0
C3	C4	O4	109.8	109.6
C3	C4	H4	109.6	109.5
O3	C3	H3	109.3	109.6
C3	O3	HO3	109.5	106.8
C5	C4	O4	109.5	109.6
C5	C4	H4	109.9	109.6
C4	C5	C6	113.0	109.4
C4	C5	O5	109.6	109.8
C4	C5	H5	106.5	109.4
O4	C4	H4	109.1	109.5
C4	O4	HO4	109.5	106.8
C6	C5	O5	107.9	109.4
C6	C5	H5	108.2	109.4
C5	C6	O6	110.6	109.5
C5	C6	H61	108.8	109.5
C5	C6	H62	109.1	109.5
O5	C5	H5	111.7	109.4
O6	C6	H61	108.9	109.4
O6	C6	H62	109.1	109.5
C6	O6	HO6	109.5	106.8
H61	C6	H62	110.3	109.5

Torsion Angles for BO1

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O2A	S1	O1	N1	123.2	236.9
O2A	S1	O1	C1A	239.1	123.2
N1	S1	O1	C1A	115.9	246.3
O1	S1	N1	HN11	331.2	352.6
O1	S1	N1	HN12	211.1	172.3
O1	S1	C1A	C2A	249.2	157.1
O1	S1	C1A	C6A	69.0	337.4
O1	S1	O2A	N1	237.3	123.1
O1	S1	O2A	C1A	120.2	236.8
N1	S1	O2A	C1A	242.8	113.7
O2A	S1	N1	HN11	201.9	127.4
O2A	S1	N1	HN12	81.9	307.1
O2A	S1	C1A	C2A	17.0	22.3
O2A	S1	C1A	C6A	196.8	202.6
O1	S1	N1	O2A	129.3	225.2
O1	S1	N1	C1A	245.7	112.6
O2A	S1	N1	C1A	116.5	247.4
N1	S1	C1A	C2A	134.1	269.7
N1	S1	C1A	C6A	313.9	90.0
HN11	N1	S1	HN12	120.0	180.2
O1	S1	C1A	O2A	232.2	134.8
O1	S1	C1A	N1	115.1	247.4
O2A	S1	C1A	N1	242.9	112.6
C1A	S1	N1	HN11	85.4	240.0
C1A	S1	N1	HN12	325.4	59.8
C2A	C1A	S1	C6A	180.2	179.7
S1	C1A	C2A	C3A	179.8	179.7
S1	C1A	C2A	H2A	359.8	0.3
S1	C1A	C6A	C5A	180.3	180.0
S1	C1A	C6A	H6	0.3	360.0
HN11	N1	S1	C1A	85.4	240.0
S1	N1	HN11	HN12	240.0	179.8
HN12	N1	S1	C1A	325.4	59.8
S1	N1	HN12	HN11	120.0	180.2
S1	C1A	C2A	C6A	179.8	180.3
C2A	C1A	C6A	C5A	0.1	0.3
C2A	C1A	C6A	H6	180.1	180.3
C3A	C2A	C1A	H2A	180.0	179.5
C1A	C2A	C3A	C4A	0.0	0.5
C1A	C2A	C3A	H3A	180.1	180.3
S1	C1A	C6A	C2A	180.2	179.7
C6A	C1A	C2A	C3A	360.0	359.4
C6A	C1A	C2A	H2A	180.0	180.0
C4A	C5A	C6A	C1A	359.9	0.0
C1A	C6A	C5A	H5A	179.9	180.0
C5A	C6A	C1A	H6	180.0	180.0
C3A	C2A	C1A	C6A	360.0	359.4
C1A	C2A	C3A	H2A	180.0	180.5
C4A	C3A	C2A	H3A	180.0	180.2
C2A	C3A	C4A	C5A	359.9	359.8
C2A	C3A	C4A	N2	180.2	179.7
H2A	C2A	C1A	C6A	180.0	180.0
C1A	C2A	H2A	C3A	180.0	179.5
H2A	C2A	C3A	C4A	180.0	180.0
H2A	C2A	C3A	H3A	0.0	359.8
C4A	C3A	C2A	H2A	180.0	180.0
C2A	C3A	C4A	H3A	180.0	179.8
C5A	C4A	C3A	N2	179.8	180.1
C3A	C4A	C5A	C6A	0.1	359.9
C3A	C4A	C5A	H5A	180.1	180.0
C3A	C4A	N2	C1	12.7	0.1
C3A	C4A	N2	HN2	132.7	180.1
H3A	C3A	C2A	H2A	0.0	359.8
C2A	C3A	H3A	C4A	180.0	180.2
H3A	C3A	C4A	C5A	179.9	180.0
H3A	C3A	C4A	N2	0.2	359.9
C1A	C6A	C5A	C4A	359.9	0.0
C5A	C4A	C3A	H3A	179.9	180.0
C3A	C4A	C5A	N2	180.2	179.9
C5A	C4A	N2	C1	193.0	180.0
C5A	C4A	N2	HN2	313.0	360.0
C6A	C5A	C4A	H5A	180.0	180.0
C4A	C5A	C6A	H6	179.9	180.0
N2	C4A	C3A	H3A	0.2	359.9
C3A	C4A	N2	C5A	179.8	180.1
N2	C4A	C5A	C6A	179.8	180.0
N2	C4A	C5A	H5A	359.9	0.1
C1	N2	C4A	HN2	240.0	180.0
C4A	N2	C1	C2	178.8	144.8
C4A	N2	C1	O5	300.3	265.1
C4A	N2	C1	H1	59.9	25.0
C1A	C6A	C5A	H6	180.0	180.0
C6A	C5A	C4A	N2	179.8	180.0
C4A	C5A	C6A	H5A	180.0	180.0
H5A	C5A	C4A	N2	359.9	0.1
C4A	C5A	H5A	C6A	180.0	180.0
H5A	C5A	C6A	H6	359.9	360.0
C1A	C6A	H6	C5A	180.0	180.0
H6	C6A	C5A	H5A	359.9	360.0
C4A	N2	C1	HN2	120.0	180.0
C2	C1	N2	O5	238.6	239.7
C2	C1	N2	H1	119.0	119.8
N2	C1	C2	C3	179.5	181.4
N2	C1	C2	O2	300.5	301.3
N2	C1	C2	H2	60.5	61.6
O5	C1	N2	H1	240.4	240.1
N2	C1	O5	C5	179.8	172.3
C4A	N2	HN2	C1	226.1	180.0
HN2	N2	C1	C2	58.8	324.8
HN2	N2	C1	O5	180.2	85.1
HN2	N2	C1	H1	299.8	205.0
C2	C1	N2	HN2	58.8	324.8
N2	C1	C2	O5	121.5	120.1
N2	C1	C2	H1	241.1	240.2
O5	C1	C2	H1	119.6	120.1
C2	C1	O5	C5	301.8	292.4
C3	C2	C1	O2	239.0	240.1
C3	C2	C1	H2	119.0	119.9
C1	C2	C3	C4	299.6	306.2
C1	C2	C3	O3	179.9	186.4
C1	C2	C3	H3	59.8	66.0
O2	C2	C1	H2	240.0	239.7
C1	C2	O2	HO2	148.7	60.4
O5	C1	N2	HN2	180.2	85.1
N2	C1	O5	C2	238.0	239.9
N2	C1	O5	H1	119.0	119.9
C2	C1	O5	H1	241.0	240.0
O5	C1	C2	C3	58.0	61.3
O5	C1	C2	O2	179.0	181.2
O5	C1	C2	H2	299.0	301.5
C4	C5	O5	C1	58.1	67.6
C6	C5	O5	C1	181.5	187.6
C1	O5	C5	H5	300.3	307.5
H1	C1	N2	HN2	299.8	205.0
N2	C1	H1	C2	120.4	119.8
N2	C1	H1	O5	240.2	240.1
C2	C1	H1	O5	119.8	120.3
H1	C1	C2	C3	298.4	301.2
H1	C1	C2	O2	59.4	61.1
H1	C1	C2	H2	179.4	181.4
H1	C1	O5	C5	60.8	52.4
C3	C2	C1	O5	58.0	61.3
C3	C2	C1	H1	298.4	301.2
C1	C2	C3	O2	118.7	119.9
C1	C2	C3	H2	238.7	240.1
O2	C2	C3	H2	120.0	120.2
C3	C2	O2	HO2	268.4	180.0
C4	C3	C2	O3	119.8	119.8
C4	C3	C2	H3	239.8	240.2
C2	C3	C4	C5	60.1	53.8
C2	C3	C4	O4	180.0	173.7
C2	C3	C4	H4	299.8	293.9
O3	C3	C2	H3	120.0	120.4
C2	C3	O3	HO3	116.3	299.2
O2	C2	C1	O5	179.0	181.2
O2	C2	C1	H1	59.4	61.1
C1	C2	O2	C3	240.3	240.5
C1	C2	O2	H2	121.3	120.3
C3	C2	O2	H2	241.0	239.8
O2	C2	C3	C4	180.9	186.3
O2	C2	C3	O3	61.2	66.5
O2	C2	C3	H3	301.1	306.1
H2	C2	C1	O5	299.0	301.5
H2	C2	C1	H1	179.4	181.4
C1	C2	H2	C3	119.9	119.5
C1	C2	H2	O2	241.1	239.7
C3	C2	H2	O2	121.2	120.2
H2	C2	C3	C4	60.9	66.1
H2	C2	C3	O3	301.2	306.4
H2	C2	C3	H3	181.1	185.9
H2	C2	O2	HO2	27.5	300.1
C4	C3	C2	O2	180.9	186.3
C4	C3	C2	H2	60.9	66.1
C2	C3	C4	O3	240.9	240.2
C2	C3	C4	H3	120.8	119.8
O3	C3	C4	H3	239.9	239.7
C4	C3	O3	HO3	357.2	180.0
C5	C4	C3	O4	240.1	240.1
C5	C4	C3	H4	120.3	119.9
C3	C4	C5	C6	181.1	178.7
C3	C4	C5	O5	301.4	298.8
C3	C4	C5	H5	62.4	58.8
O4	C4	C3	H4	240.2	239.8
C3	C4	O4	HO4	306.7	60.4
O3	C3	C2	O2	61.2	66.5
O3	C3	C2	H2	301.2	306.4
C2	C3	O3	C4	119.1	119.2
C2	C3	O3	H3	239.2	239.5
C4	C3	O3	H3	120.2	120.3
O3	C3	C4	C5	179.3	173.6
O3	C3	C4	O4	299.2	293.5
O3	C3	C4	H4	59.0	53.7
H3	C3	C2	O2	301.1	306.1
H3	C3	C2	H2	181.1	185.9
C2	C3	H3	C4	240.2	240.8
C2	C3	H3	O3	119.8	120.5
C4	C3	H3	O3	239.6	239.7
H3	C3	C4	C5	299.3	293.9
H3	C3	C4	O4	59.2	53.8
H3	C3	C4	H4	179.0	174.0
H3	C3	O3	HO3	237.0	59.7
C1	O5	C5	C4	58.1	67.6
C5	C4	C3	O3	179.3	173.6
C5	C4	C3	H3	299.3	293.9
C3	C4	C5	O4	120.1	120.0
C3	C4	C5	H4	239.9	240.1
O4	C4	C5	H4	119.8	120.2
C5	C4	O4	HO4	66.3	180.0
C6	C5	C4	O5	239.7	239.9
C6	C5	C4	H5	118.7	119.9
C4	C5	C6	O6	69.6	185.3
C4	C5	C6	H61	310.1	305.3
C4	C5	C6	H62	189.6	65.3
O5	C5	C4	H5	239.0	239.9
O4	C4	C3	O3	299.2	293.5
O4	C4	C3	H3	59.2	53.8
C3	C4	O4	C5	240.4	240.4
C3	C4	O4	H4	120.1	120.2
C5	C4	O4	H4	239.7	239.8
O4	C4	C5	C6	61.0	58.7
O4	C4	C5	O5	181.3	178.8
O4	C4	C5	H5	302.3	298.9
H4	C4	C3	O3	59.0	53.7
H4	C4	C3	H3	179.0	174.0
C3	C4	H4	C5	119.7	119.5
C3	C4	H4	O4	239.7	239.7
C5	C4	H4	O4	120.0	120.2
H4	C4	C5	C6	301.2	298.5
H4	C4	C5	O5	61.5	58.6
H4	C4	C5	H5	182.5	178.7
H4	C4	O4	HO4	186.6	300.2
C1	O5	C5	C6	181.5	187.6
C6	C5	C4	O4	61.0	58.7
C6	C5	C4	H4	301.2	298.5
C4	C5	C6	O5	121.4	120.3
C4	C5	C6	H5	242.4	240.2
O5	C5	C6	H5	121.0	119.9
O6	C6	C5	H61	119.5	240.0
O6	C6	C5	H62	240.0	120.0
C5	C6	O6	HO6	258.5	180.0
H61	C6	C5	H62	120.4	240.0
C5	O5	C1	H1	60.8	52.4
O5	C5	C4	O4	181.3	178.8
O5	C5	C4	H4	61.5	58.6
C4	C5	O5	C6	236.6	240.0
C4	C5	O5	H5	117.8	120.1
C6	C5	O5	H5	241.2	240.1
O5	C5	C6	O6	308.3	65.0
O5	C5	C6	H61	188.7	185.0
O5	C5	C6	H62	68.3	305.0
H5	C5	C4	O4	302.3	298.9
H5	C5	C4	H4	182.5	178.7
C4	C5	H5	C6	121.7	119.8
C4	C5	H5	O5	240.3	239.7
C6	C5	H5	O5	118.6	119.9
H5	C5	C6	O6	187.3	305.1
H5	C5	C6	H61	67.7	65.1
H5	C5	C6	H62	307.3	185.1
O6	C6	C5	O5	308.3	65.0
O6	C6	C5	H5	187.3	305.1
C5	C6	O6	H61	240.5	120.0
C5	C6	O6	H62	120.0	240.0
H61	C6	O6	H62	239.5	120.0
H61	C6	C5	O5	188.7	185.0
H61	C6	C5	H5	67.7	65.1
C5	C6	H61	O6	120.6	240.0
C5	C6	H61	H62	240.3	120.0
O6	C6	H61	H62	119.7	240.0
H61	C6	O6	HO6	18.0	60.0
H62	C6	C5	O5	68.3	305.0
H62	C6	C5	H5	307.3	185.1
C5	C6	H62	O6	239.1	120.0
C5	C6	H62	H61	119.5	240.0
O6	C6	H62	H61	240.4	120.0
H62	C6	O6	HO6	138.5	300.0
HO2	O2	C2	H2	27.5	300.1
HO3	O3	C3	H3	237.0	59.7
HO4	O4	C4	H4	186.6	300.2
HO6	O6	C6	H61	18.0	60.0
HO6	O6	C6	H62	138.5	300.0