PDB Chemical Component BND

Ideal Model

Chemical Description

Name methyl 5-acetamido-3,5,9-trideoxy-9-[(phenylcarbonyl)amino]-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid
Synonyms ME-A-N-BENZOYL-AMINO-9-DEOXY-NEU5AC; methyl 5-acetamido-3,5,9-trideoxy-9-[(phenylcarbonyl)amino]-D-glycero-alpha-D-galacto-non-2-ulosidonic acid; methyl 5-acetamido-3,5,9-trideoxy-9-[(phenylcarbonyl)amino]-D-glycero-D-galacto-non-2-ulosidonic acid; methyl 5-acetamido-3,5,9-trideoxy-9-[(phenylcarbonyl)amino]-D-glycero-galacto-non-2-ulosidonic acid
Formula C19 H26 N2 O9
Formal charge 0
Molecular weight 426.418 g/mol
Component type D-saccharide

Chemical features

Atom count 56
Chiral atom count 6
Chiral atoms C2 C4 C5 C6 C7 C8
Observed leaving atoms HO4 HO7 HO8
Bond count 57
Aromatic bond count 6

Chemical Identifiers

Systematic name (ACDLabs) methyl 5-(acetylamino)-3,5,9-trideoxy-9-[(phenylcarbonyl)amino]-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid
Systematic name (OpenEye OEToolkits) (2R,4S,5R,6R)-5-acetamido-6-[(1R,2R)-3-benzamido-1,2-dihydroxy-propyl]-4-hydroxy-2-methoxy-oxane-2-carboxylic acid

Chemical Descriptors

Stereo SMILES (CACTVS) CO[C@@]1(C[C@H](O)[C@@H](NC(C)=O)[C@@H](O1)[C@H](O)[C@H](O)CNC(=O)c2ccccc2)C(O)=O
SMILES (CACTVS) CO[C]1(C[CH](O)[CH](NC(C)=O)[CH](O1)[CH](O)[CH](O)CNC(=O)c2ccccc2)C(O)=O
Stereo SMILES (OpenEye) CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CNC(=O)c2ccccc2)O)O)(C(=O)O)OC)O
InChI descriptor InChI=1S/C19H26N2O9/c1-10(22)21-14-12(23)8-19(29-2,18(27)28)30-16(14)15(25)13(24)9-20-17(26)11-6-4-3-5-7-11/h3-7,12-16,23-25H,8-9H2,1-2H3,(H,20,26)(H,21,22)(H,27,28)/t12-,13+,14+,15+,16+,19+/m0/s1
InChIKey descriptor ULZLCALWUIQOMB-YRIWUQCMSA-N

Status Information

Last modified 2020-07-17
Created 2003-02-14
Release status REL
Model PDB code 1OD9
Processing site EBI