PDB Chemical Component BMZ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for BMZ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.437 |
1.401 |
| C1 |
C6 |
1.419 |
1.391 |
| C1 |
C7 |
1.425 |
1.478 |
| C2 |
C3 |
1.400 |
1.366 |
| C2 |
HC2 |
1.078 |
1.079 |
| C3 |
C4 |
1.370 |
1.390 |
| C3 |
HC3 |
1.078 |
1.080 |
| C4 |
C5 |
1.357 |
1.409 |
| C4 |
N3 |
1.295 |
1.379 |
| C5 |
C6 |
1.386 |
1.395 |
| C5 |
N4 |
1.331 |
1.356 |
| C6 |
HC6 |
1.080 |
1.080 |
| C7 |
N1 |
1.321 |
1.333 |
| C7 |
N2 |
1.312 |
1.333 |
| N1 |
HH11 |
1.010 |
0.969 |
| N1 |
HH12 |
1.001 |
0.970 |
| N2 |
HH21 |
1.013 |
0.970 |
| N2 |
HH22 |
0.990 |
0.969 |
| N3 |
C8 |
1.293 |
1.370 |
| N3 |
HN3 |
0.984 |
0.971 |
| N4 |
C8 |
1.330 |
1.311 |
| C8 |
C1' |
1.411 |
1.478 |
| C1' |
C2' |
1.402 |
1.396 |
| C1' |
C6' |
1.410 |
1.400 |
| C2' |
C3' |
1.395 |
1.379 |
| C2' |
HC2' |
1.082 |
1.080 |
| C3' |
C4' |
1.379 |
1.384 |
| C3' |
HC3' |
1.083 |
1.080 |
| C4' |
C5' |
1.373 |
1.381 |
| C4' |
HC4' |
1.079 |
1.080 |
| C5' |
C6' |
1.389 |
1.386 |
| C5' |
HC5' |
1.079 |
1.080 |
| C6' |
O6' |
1.371 |
1.357 |
| O6' |
HO6 |
0.950 |
0.966 |
Bond Angles for BMZ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C6 |
117.2 |
120.2 |
| C2 |
C1 |
C7 |
120.4 |
119.8 |
| C1 |
C2 |
C3 |
122.9 |
120.4 |
| C1 |
C2 |
HC2 |
119.4 |
119.8 |
| C6 |
C1 |
C7 |
122.4 |
119.9 |
| C1 |
C6 |
C5 |
118.3 |
119.6 |
| C1 |
C6 |
HC6 |
120.9 |
120.2 |
| C1 |
C7 |
N1 |
119.9 |
120.0 |
| C1 |
C7 |
N2 |
119.5 |
120.0 |
| C3 |
C2 |
HC2 |
117.6 |
119.8 |
| C2 |
C3 |
C4 |
115.9 |
120.2 |
| C2 |
C3 |
HC3 |
122.3 |
119.9 |
| C4 |
C3 |
HC3 |
121.7 |
119.9 |
| C3 |
C4 |
C5 |
123.6 |
120.1 |
| C3 |
C4 |
N3 |
130.0 |
133.7 |
| C5 |
C4 |
N3 |
106.4 |
106.1 |
| C4 |
C5 |
C6 |
122.0 |
119.5 |
| C4 |
C5 |
N4 |
112.4 |
107.2 |
| C4 |
N3 |
C8 |
105.5 |
107.3 |
| C4 |
N3 |
HN3 |
130.9 |
126.4 |
| C6 |
C5 |
N4 |
125.7 |
133.3 |
| C5 |
C6 |
HC6 |
120.7 |
120.2 |
| C5 |
N4 |
C8 |
99.1 |
109.5 |
| N1 |
C7 |
N2 |
120.6 |
120.0 |
| C7 |
N1 |
HH11 |
120.2 |
120.0 |
| C7 |
N1 |
HH12 |
124.3 |
119.9 |
| C7 |
N2 |
HH21 |
119.0 |
120.0 |
| C7 |
N2 |
HH22 |
124.1 |
120.0 |
| HH11 |
N1 |
HH12 |
115.4 |
120.1 |
| HH21 |
N2 |
HH22 |
116.8 |
120.0 |
| C8 |
N3 |
HN3 |
123.6 |
126.3 |
| N3 |
C8 |
N4 |
116.6 |
109.8 |
| N3 |
C8 |
C1' |
119.2 |
125.1 |
| N4 |
C8 |
C1' |
124.2 |
125.1 |
| C8 |
C1' |
C2' |
122.8 |
120.2 |
| C8 |
C1' |
C6' |
120.8 |
120.2 |
| C2' |
C1' |
C6' |
116.4 |
119.6 |
| C1' |
C2' |
C3' |
121.6 |
119.9 |
| C1' |
C2' |
HC2' |
119.7 |
120.0 |
| C1' |
C6' |
C5' |
121.6 |
119.7 |
| C1' |
C6' |
O6' |
122.0 |
120.1 |
| C3' |
C2' |
HC2' |
118.7 |
120.1 |
| C2' |
C3' |
C4' |
120.2 |
120.3 |
| C2' |
C3' |
HC3' |
119.8 |
119.8 |
| C4' |
C3' |
HC3' |
120.0 |
119.9 |
| C3' |
C4' |
C5' |
119.8 |
120.3 |
| C3' |
C4' |
HC4' |
120.0 |
119.8 |
| C5' |
C4' |
HC4' |
120.1 |
119.8 |
| C4' |
C5' |
C6' |
120.4 |
120.1 |
| C4' |
C5' |
HC5' |
119.9 |
120.0 |
| C6' |
C5' |
HC5' |
119.7 |
119.9 |
| C5' |
C6' |
O6' |
116.4 |
120.2 |
| C6' |
O6' |
HO6 |
109.5 |
106.8 |
Torsion Angles for BMZ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C1 |
C2 |
C7 |
181.5 |
180.2 |
| C2 |
C1 |
C6 |
C5 |
0.2 |
359.5 |
| C2 |
C1 |
C6 |
HC6 |
179.6 |
179.7 |
| C2 |
C1 |
C7 |
N1 |
166.7 |
180.0 |
| C2 |
C1 |
C7 |
N2 |
347.1 |
360.0 |
| C3 |
C2 |
C1 |
HC2 |
182.2 |
179.9 |
| C1 |
C2 |
C3 |
C4 |
359.2 |
0.1 |
| C1 |
C2 |
C3 |
HC3 |
179.3 |
180.0 |
| C2 |
C1 |
C6 |
C7 |
178.5 |
179.8 |
| C6 |
C1 |
C2 |
C3 |
0.4 |
0.2 |
| C6 |
C1 |
C2 |
HC2 |
178.2 |
180.3 |
| C6 |
C1 |
C7 |
N1 |
345.1 |
359.7 |
| C6 |
C1 |
C7 |
N2 |
165.5 |
179.7 |
| C4 |
C5 |
C6 |
C1 |
359.6 |
0.5 |
| C1 |
C6 |
C5 |
N4 |
179.2 |
180.2 |
| C5 |
C6 |
C1 |
HC6 |
180.6 |
179.8 |
| C2 |
C1 |
C7 |
C6 |
181.6 |
180.2 |
| C7 |
C1 |
C2 |
C3 |
178.9 |
179.9 |
| C7 |
C1 |
C2 |
HC2 |
356.7 |
0.0 |
| C7 |
C1 |
C6 |
C5 |
181.7 |
179.8 |
| C7 |
C1 |
C6 |
HC6 |
1.1 |
359.9 |
| N1 |
C7 |
C1 |
N2 |
179.6 |
180.0 |
| C1 |
C7 |
N1 |
HH11 |
358.1 |
360.0 |
| C1 |
C7 |
N1 |
HH12 |
175.4 |
180.0 |
| C1 |
C7 |
N2 |
HH21 |
1.4 |
180.0 |
| C1 |
C7 |
N2 |
HH22 |
179.6 |
359.7 |
| C3 |
C2 |
C1 |
C6 |
0.4 |
0.2 |
| C3 |
C2 |
C1 |
C7 |
178.9 |
179.9 |
| C1 |
C2 |
C3 |
HC2 |
177.9 |
180.1 |
| C4 |
C3 |
C2 |
HC3 |
179.9 |
180.1 |
| C2 |
C3 |
C4 |
C5 |
0.6 |
360.0 |
| C2 |
C3 |
C4 |
N3 |
181.7 |
179.9 |
| HC2 |
C2 |
C1 |
C6 |
178.2 |
180.3 |
| HC2 |
C2 |
C1 |
C7 |
356.7 |
0.0 |
| C1 |
C2 |
HC2 |
C3 |
182.1 |
179.9 |
| HC2 |
C2 |
C3 |
C4 |
181.4 |
180.0 |
| HC2 |
C2 |
C3 |
HC3 |
1.5 |
359.9 |
| C4 |
C3 |
C2 |
HC2 |
181.4 |
180.0 |
| C2 |
C3 |
C4 |
HC3 |
180.1 |
179.9 |
| C5 |
C4 |
C3 |
N3 |
179.0 |
180.1 |
| C3 |
C4 |
C5 |
C6 |
359.9 |
359.7 |
| C3 |
C4 |
C5 |
N4 |
180.4 |
179.9 |
| C3 |
C4 |
N3 |
C8 |
179.2 |
180.1 |
| C3 |
C4 |
N3 |
HN3 |
358.8 |
0.1 |
| HC3 |
C3 |
C2 |
HC2 |
1.5 |
359.9 |
| C2 |
C3 |
HC3 |
C4 |
179.9 |
180.1 |
| HC3 |
C3 |
C4 |
C5 |
180.5 |
180.1 |
| HC3 |
C3 |
C4 |
N3 |
1.5 |
360.0 |
| C1 |
C6 |
C5 |
C4 |
359.6 |
0.5 |
| C5 |
C4 |
C3 |
HC3 |
180.5 |
180.1 |
| C3 |
C4 |
C5 |
N3 |
180.8 |
179.9 |
| C5 |
C4 |
N3 |
C8 |
0.1 |
360.0 |
| C5 |
C4 |
N3 |
HN3 |
179.7 |
180.0 |
| C6 |
C5 |
C4 |
N4 |
179.6 |
179.8 |
| C4 |
C5 |
C6 |
HC6 |
180.3 |
180.3 |
| C4 |
C5 |
N4 |
C8 |
0.6 |
0.0 |
| N3 |
C4 |
C3 |
HC3 |
1.5 |
360.0 |
| C3 |
C4 |
N3 |
C5 |
179.1 |
180.1 |
| N3 |
C4 |
C5 |
C6 |
179.1 |
179.8 |
| N3 |
C4 |
C5 |
N4 |
359.5 |
0.0 |
| C8 |
N3 |
C4 |
HN3 |
180.5 |
179.9 |
| C4 |
N3 |
C8 |
N4 |
0.2 |
0.0 |
| C4 |
N3 |
C8 |
C1' |
181.2 |
180.0 |
| C5 |
C6 |
C1 |
C7 |
181.7 |
179.8 |
| C1 |
C6 |
C5 |
HC6 |
179.4 |
180.2 |
| C6 |
C5 |
C4 |
N3 |
179.1 |
179.8 |
| C4 |
C5 |
C6 |
N4 |
180.5 |
180.3 |
| C6 |
C5 |
N4 |
C8 |
181.0 |
180.3 |
| N4 |
C5 |
C4 |
N3 |
359.5 |
0.0 |
| C4 |
C5 |
N4 |
C6 |
179.6 |
179.7 |
| N4 |
C5 |
C6 |
HC6 |
359.8 |
0.0 |
| N3 |
C8 |
N4 |
C5 |
359.5 |
360.0 |
| C5 |
N4 |
C8 |
C1' |
178.5 |
180.0 |
| HC6 |
C6 |
C1 |
C7 |
1.1 |
359.9 |
| C1 |
C6 |
HC6 |
C5 |
180.6 |
179.8 |
| HC6 |
C6 |
C5 |
N4 |
359.8 |
0.0 |
| C1 |
C7 |
N1 |
N2 |
180.4 |
180.0 |
| N1 |
C7 |
N2 |
HH21 |
181.8 |
0.0 |
| N1 |
C7 |
N2 |
HH22 |
360.0 |
179.7 |
| HH11 |
N1 |
C7 |
HH12 |
182.6 |
180.0 |
| C1 |
C7 |
N2 |
N1 |
179.6 |
180.0 |
| N2 |
C7 |
N1 |
HH11 |
177.6 |
179.9 |
| N2 |
C7 |
N1 |
HH12 |
355.0 |
360.0 |
| HH21 |
N2 |
C7 |
HH22 |
181.8 |
180.3 |
| HH11 |
N1 |
C7 |
N2 |
177.6 |
179.9 |
| C7 |
N1 |
HH11 |
HH12 |
177.6 |
180.0 |
| HH12 |
N1 |
C7 |
N2 |
355.0 |
360.0 |
| C7 |
N1 |
HH12 |
HH11 |
182.5 |
180.0 |
| C7 |
N2 |
HH21 |
HH22 |
178.3 |
179.7 |
| C7 |
N2 |
HH22 |
HH21 |
181.8 |
180.3 |
| C4 |
N3 |
C8 |
HN3 |
179.6 |
180.1 |
| C5 |
N4 |
C8 |
N3 |
359.5 |
360.0 |
| N4 |
C8 |
N3 |
C1' |
179.0 |
180.0 |
| N3 |
C8 |
C1' |
C2' |
191.7 |
40.0 |
| N3 |
C8 |
C1' |
C6' |
13.1 |
219.7 |
| C4 |
N3 |
HN3 |
C8 |
180.6 |
179.9 |
| HN3 |
N3 |
C8 |
N4 |
180.7 |
180.0 |
| HN3 |
N3 |
C8 |
C1' |
1.6 |
359.9 |
| N4 |
C8 |
N3 |
HN3 |
180.7 |
180.0 |
| N3 |
C8 |
N4 |
C1' |
181.0 |
180.0 |
| N4 |
C8 |
C1' |
C2' |
12.7 |
220.0 |
| N4 |
C8 |
C1' |
C6' |
194.2 |
39.7 |
| C1' |
C8 |
N3 |
HN3 |
1.6 |
359.9 |
| N3 |
C8 |
C1' |
N4 |
179.0 |
180.0 |
| C2' |
C1' |
C8 |
C6' |
178.6 |
180.3 |
| C8 |
C1' |
C2' |
C3' |
181.3 |
180.0 |
| C8 |
C1' |
C2' |
HC2' |
1.7 |
360.0 |
| C8 |
C1' |
C6' |
C5' |
178.7 |
179.8 |
| C8 |
C1' |
C6' |
O6' |
358.1 |
0.3 |
| C8 |
C1' |
C2' |
C6' |
181.4 |
179.7 |
| C2' |
C1' |
C6' |
C5' |
0.0 |
359.5 |
| C2' |
C1' |
C6' |
O6' |
179.5 |
180.0 |
| C3' |
C2' |
C1' |
HC2' |
179.6 |
180.0 |
| C1' |
C2' |
C3' |
C4' |
0.5 |
0.0 |
| C1' |
C2' |
C3' |
HC3' |
180.1 |
180.0 |
| C8 |
C1' |
C6' |
C2' |
178.6 |
180.3 |
| C6' |
C1' |
C2' |
C3' |
359.9 |
0.3 |
| C6' |
C1' |
C2' |
HC2' |
180.3 |
180.3 |
| C4' |
C5' |
C6' |
C1' |
359.7 |
0.5 |
| C1' |
C6' |
C5' |
HC5' |
179.8 |
180.3 |
| C5' |
C6' |
C1' |
O6' |
180.5 |
179.5 |
| C1' |
C6' |
O6' |
HO6 |
203.3 |
269.5 |
| C3' |
C2' |
C1' |
C6' |
359.9 |
0.3 |
| C1' |
C2' |
C3' |
HC2' |
180.4 |
180.0 |
| C4' |
C3' |
C2' |
HC3' |
180.4 |
180.0 |
| C2' |
C3' |
C4' |
C5' |
359.3 |
360.0 |
| C2' |
C3' |
C4' |
HC4' |
180.2 |
180.0 |
| HC2' |
C2' |
C1' |
C6' |
180.3 |
180.3 |
| C1' |
C2' |
HC2' |
C3' |
179.6 |
180.0 |
| HC2' |
C2' |
C3' |
C4' |
180.1 |
180.0 |
| HC2' |
C2' |
C3' |
HC3' |
359.7 |
360.0 |
| C4' |
C3' |
C2' |
HC2' |
180.1 |
180.0 |
| C2' |
C3' |
C4' |
HC3' |
179.6 |
180.0 |
| C5' |
C4' |
C3' |
HC4' |
179.1 |
180.0 |
| C3' |
C4' |
C5' |
C6' |
0.6 |
359.8 |
| C3' |
C4' |
C5' |
HC5' |
180.6 |
180.0 |
| HC3' |
C3' |
C2' |
HC2' |
359.7 |
360.0 |
| C2' |
C3' |
HC3' |
C4' |
180.4 |
180.0 |
| HC3' |
C3' |
C4' |
C5' |
179.7 |
180.0 |
| HC3' |
C3' |
C4' |
HC4' |
0.6 |
360.0 |
| C1' |
C6' |
C5' |
C4' |
359.7 |
0.5 |
| C5' |
C4' |
C3' |
HC3' |
179.7 |
180.0 |
| C3' |
C4' |
C5' |
HC4' |
180.9 |
180.0 |
| C6' |
C5' |
C4' |
HC5' |
180.0 |
179.8 |
| C4' |
C5' |
C6' |
O6' |
180.2 |
180.0 |
| HC4' |
C4' |
C3' |
HC3' |
0.6 |
360.0 |
| C3' |
C4' |
HC4' |
C5' |
179.1 |
180.0 |
| HC4' |
C4' |
C5' |
C6' |
179.7 |
179.8 |
| HC4' |
C4' |
C5' |
HC5' |
359.7 |
360.0 |
| C1' |
C6' |
C5' |
O6' |
179.5 |
180.5 |
| C6' |
C5' |
C4' |
HC4' |
179.7 |
179.8 |
| C4' |
C5' |
C6' |
HC5' |
180.0 |
180.2 |
| C5' |
C6' |
O6' |
HO6 |
22.8 |
90.0 |
| HC5' |
C5' |
C4' |
HC4' |
359.7 |
360.0 |
| C4' |
C5' |
HC5' |
C6' |
180.0 |
179.8 |
| HC5' |
C5' |
C6' |
O6' |
0.2 |
359.8 |
| C1' |
C6' |
O6' |
C5' |
180.5 |
179.5 |
| O6' |
C6' |
C5' |
HC5' |
0.2 |
359.8 |