PDB Chemical Component BMT
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for BMT
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CN |
1.512 |
1.469 |
| N |
CA |
1.461 |
1.468 |
| N |
H |
1.000 |
1.009 |
| CN |
HN1 |
1.100 |
1.090 |
| CN |
HN2 |
1.100 |
1.090 |
| CN |
HN3 |
1.100 |
1.090 |
| CA |
C |
1.526 |
1.507 |
| CA |
CB |
1.567 |
1.530 |
| CA |
HA |
1.100 |
1.090 |
| C |
O |
1.334 |
1.209 |
| C |
OXT |
1.254 |
1.343 |
| OXT |
HXT |
0.950 |
0.968 |
| CB |
OG1 |
1.431 |
1.428 |
| CB |
CG2 |
1.557 |
1.530 |
| CB |
HB |
1.100 |
1.091 |
| OG1 |
HG1 |
0.950 |
0.967 |
| CG2 |
CD1 |
1.549 |
1.530 |
| CG2 |
CD2 |
1.538 |
1.530 |
| CG2 |
HG2 |
1.100 |
1.090 |
| CD1 |
HD11 |
1.100 |
1.090 |
| CD1 |
HD12 |
1.100 |
1.089 |
| CD1 |
HD13 |
1.100 |
1.091 |
| CD2 |
CE |
1.529 |
1.507 |
| CD2 |
HD22 |
1.100 |
1.090 |
| CD2 |
HD23 |
1.100 |
1.090 |
| CE |
CZ |
1.425 |
1.310 |
| CE |
HE |
1.080 |
1.080 |
| CZ |
CH |
1.521 |
1.507 |
| CZ |
HZ |
1.080 |
1.080 |
| CH |
HH1 |
1.100 |
1.090 |
| CH |
HH2 |
1.100 |
1.089 |
| CH |
HH3 |
1.100 |
1.090 |
Bond Angles for BMT
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CN |
N |
CA |
120.9 |
111.0 |
| CN |
N |
H |
105.8 |
111.0 |
| N |
CN |
HN1 |
109.5 |
109.5 |
| N |
CN |
HN2 |
109.4 |
109.5 |
| N |
CN |
HN3 |
109.5 |
109.5 |
| CA |
N |
H |
105.8 |
111.0 |
| N |
CA |
C |
112.0 |
109.5 |
| N |
CA |
CB |
111.8 |
109.4 |
| N |
CA |
HA |
106.4 |
109.5 |
| HN1 |
CN |
HN2 |
109.5 |
109.5 |
| HN1 |
CN |
HN3 |
109.4 |
109.4 |
| HN2 |
CN |
HN3 |
109.5 |
109.5 |
| C |
CA |
CB |
110.3 |
109.4 |
| C |
CA |
HA |
108.0 |
109.5 |
| CA |
C |
O |
112.7 |
120.0 |
| CA |
C |
OXT |
122.9 |
120.0 |
| CB |
CA |
HA |
108.2 |
109.5 |
| CA |
CB |
OG1 |
111.1 |
109.5 |
| CA |
CB |
CG2 |
112.7 |
109.5 |
| CA |
CB |
HB |
106.3 |
109.5 |
| O |
C |
OXT |
124.2 |
120.0 |
| C |
OXT |
HXT |
109.5 |
117.0 |
| OG1 |
CB |
CG2 |
110.3 |
109.5 |
| OG1 |
CB |
HB |
109.0 |
109.5 |
| CB |
OG1 |
HG1 |
109.5 |
114.0 |
| CG2 |
CB |
HB |
107.2 |
109.4 |
| CB |
CG2 |
CD1 |
113.8 |
109.5 |
| CB |
CG2 |
CD2 |
116.8 |
109.5 |
| CB |
CG2 |
HG2 |
101.3 |
109.4 |
| CD1 |
CG2 |
CD2 |
111.6 |
109.5 |
| CD1 |
CG2 |
HG2 |
107.8 |
109.5 |
| CG2 |
CD1 |
HD11 |
109.5 |
109.5 |
| CG2 |
CD1 |
HD12 |
109.5 |
109.5 |
| CG2 |
CD1 |
HD13 |
109.4 |
109.4 |
| CD2 |
CG2 |
HG2 |
104.1 |
109.5 |
| CG2 |
CD2 |
CE |
115.5 |
109.5 |
| CG2 |
CD2 |
HD22 |
107.5 |
109.5 |
| CG2 |
CD2 |
HD23 |
107.5 |
109.4 |
| HD11 |
CD1 |
HD12 |
109.5 |
109.5 |
| HD11 |
CD1 |
HD13 |
109.5 |
109.5 |
| HD12 |
CD1 |
HD13 |
109.5 |
109.4 |
| CE |
CD2 |
HD22 |
107.5 |
109.5 |
| CE |
CD2 |
HD23 |
107.5 |
109.5 |
| CD2 |
CE |
CZ |
120.6 |
120.0 |
| CD2 |
CE |
HE |
119.7 |
120.0 |
| HD22 |
CD2 |
HD23 |
111.4 |
109.5 |
| CZ |
CE |
HE |
119.7 |
120.0 |
| CE |
CZ |
CH |
120.7 |
120.0 |
| CE |
CZ |
HZ |
119.7 |
120.0 |
| CH |
CZ |
HZ |
119.7 |
120.0 |
| CZ |
CH |
HH1 |
109.5 |
109.4 |
| CZ |
CH |
HH2 |
109.5 |
109.5 |
| CZ |
CH |
HH3 |
109.5 |
109.5 |
| HH1 |
CH |
HH2 |
109.5 |
109.5 |
| HH1 |
CH |
HH3 |
109.5 |
109.5 |
| HH2 |
CH |
HH3 |
109.5 |
109.5 |
Torsion Angles for BMT
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
CN |
H |
240.0 |
236.0 |
| CN |
N |
CA |
C |
67.6 |
272.7 |
| CN |
N |
CA |
CB |
303.3 |
152.7 |
| CN |
N |
CA |
HA |
185.4 |
32.7 |
| HN1 |
CN |
N |
HN2 |
240.0 |
240.0 |
| HN1 |
CN |
N |
HN3 |
119.9 |
120.0 |
| HN2 |
CN |
N |
HN3 |
240.0 |
240.0 |
| CN |
N |
CA |
H |
120.0 |
123.9 |
| CA |
N |
CN |
HN1 |
180.0 |
180.0 |
| CA |
N |
CN |
HN2 |
300.0 |
300.0 |
| CA |
N |
CN |
HN3 |
60.0 |
60.0 |
| C |
CA |
N |
CB |
124.3 |
120.0 |
| C |
CA |
N |
HA |
242.2 |
240.0 |
| N |
CA |
C |
O |
169.2 |
0.1 |
| N |
CA |
C |
OXT |
354.2 |
180.0 |
| CB |
CA |
N |
HA |
117.9 |
120.0 |
| N |
CA |
CB |
OG1 |
67.4 |
59.3 |
| N |
CA |
CB |
CG2 |
303.1 |
299.3 |
| N |
CA |
CB |
HB |
185.9 |
179.3 |
| CN |
N |
H |
CA |
230.5 |
236.1 |
| H |
N |
CN |
HN1 |
300.0 |
303.9 |
| H |
N |
CN |
HN2 |
60.0 |
63.9 |
| H |
N |
CN |
HN3 |
180.0 |
184.0 |
| H |
N |
CA |
C |
307.6 |
148.8 |
| H |
N |
CA |
CB |
183.3 |
28.8 |
| H |
N |
CA |
HA |
65.4 |
268.8 |
| HN1 |
CN |
N |
CA |
180.0 |
180.0 |
| HN1 |
CN |
N |
H |
300.0 |
303.9 |
| N |
CN |
HN1 |
HN2 |
120.0 |
120.0 |
| N |
CN |
HN1 |
HN3 |
240.0 |
240.0 |
| HN2 |
CN |
HN1 |
HN3 |
120.1 |
120.0 |
| HN2 |
CN |
N |
CA |
300.0 |
300.0 |
| HN2 |
CN |
N |
H |
60.0 |
63.9 |
| N |
CN |
HN2 |
HN1 |
240.0 |
240.0 |
| N |
CN |
HN2 |
HN3 |
120.0 |
120.0 |
| HN1 |
CN |
HN2 |
HN3 |
240.0 |
240.0 |
| HN3 |
CN |
N |
CA |
60.0 |
60.0 |
| HN3 |
CN |
N |
H |
180.0 |
184.0 |
| N |
CN |
HN3 |
HN1 |
120.0 |
120.0 |
| N |
CN |
HN3 |
HN2 |
240.0 |
240.0 |
| HN1 |
CN |
HN3 |
HN2 |
120.0 |
120.0 |
| C |
CA |
N |
H |
307.6 |
148.8 |
| N |
CA |
C |
CB |
234.8 |
240.0 |
| N |
CA |
C |
HA |
116.8 |
120.0 |
| CB |
CA |
C |
HA |
242.0 |
240.0 |
| C |
CA |
CB |
OG1 |
302.2 |
299.3 |
| C |
CA |
CB |
CG2 |
177.8 |
179.3 |
| C |
CA |
CB |
HB |
60.6 |
59.3 |
| O |
C |
CA |
OXT |
175.0 |
180.1 |
| CA |
C |
OXT |
HXT |
174.4 |
180.0 |
| CB |
CA |
N |
H |
183.3 |
28.8 |
| N |
CA |
CB |
C |
125.3 |
120.0 |
| N |
CA |
CB |
HA |
243.2 |
240.0 |
| C |
CA |
CB |
HA |
117.9 |
120.0 |
| CB |
CA |
C |
O |
294.3 |
120.0 |
| CB |
CA |
C |
OXT |
119.4 |
300.0 |
| OG1 |
CB |
CA |
CG2 |
124.3 |
120.0 |
| OG1 |
CB |
CA |
HB |
241.5 |
240.0 |
| CA |
CB |
OG1 |
HG1 |
180.0 |
300.0 |
| CG2 |
CB |
CA |
HB |
117.2 |
119.9 |
| CA |
CB |
CG2 |
CD1 |
314.4 |
296.5 |
| CA |
CB |
CG2 |
CD2 |
182.1 |
176.5 |
| CA |
CB |
CG2 |
HG2 |
69.9 |
56.5 |
| HA |
CA |
N |
H |
65.4 |
268.8 |
| N |
CA |
HA |
C |
239.6 |
240.0 |
| N |
CA |
HA |
CB |
120.3 |
120.0 |
| C |
CA |
HA |
CB |
240.6 |
240.0 |
| HA |
CA |
C |
O |
52.4 |
240.0 |
| HA |
CA |
C |
OXT |
237.4 |
60.0 |
| HA |
CA |
CB |
OG1 |
184.3 |
179.3 |
| HA |
CA |
CB |
CG2 |
59.9 |
59.3 |
| HA |
CA |
CB |
HB |
302.7 |
299.4 |
| O |
C |
CA |
CB |
294.3 |
120.0 |
| O |
C |
CA |
HA |
52.4 |
240.0 |
| CA |
C |
O |
OXT |
185.1 |
179.9 |
| O |
C |
OXT |
HXT |
0.0 |
360.0 |
| OXT |
C |
CA |
CB |
119.4 |
300.0 |
| OXT |
C |
CA |
HA |
237.4 |
60.0 |
| CA |
C |
OXT |
O |
174.4 |
180.1 |
| OG1 |
CB |
CA |
HA |
184.3 |
179.3 |
| CA |
CB |
OG1 |
CG2 |
234.3 |
240.0 |
| CA |
CB |
OG1 |
HB |
116.8 |
120.0 |
| CG2 |
CB |
OG1 |
HB |
242.5 |
240.0 |
| OG1 |
CB |
CG2 |
CD1 |
189.6 |
176.5 |
| OG1 |
CB |
CG2 |
CD2 |
57.3 |
56.4 |
| OG1 |
CB |
CG2 |
HG2 |
305.1 |
296.5 |
| CG2 |
CB |
CA |
HA |
59.9 |
59.3 |
| CA |
CB |
CG2 |
OG1 |
124.8 |
120.0 |
| CA |
CB |
CG2 |
HB |
243.3 |
240.0 |
| OG1 |
CB |
CG2 |
HB |
118.5 |
120.0 |
| CG2 |
CB |
OG1 |
HG1 |
305.7 |
60.0 |
| CD1 |
CG2 |
CB |
CD2 |
132.3 |
120.0 |
| CD1 |
CG2 |
CB |
HG2 |
244.6 |
240.0 |
| CB |
CG2 |
CD1 |
HD11 |
180.0 |
299.9 |
| CB |
CG2 |
CD1 |
HD12 |
300.0 |
60.0 |
| CB |
CG2 |
CD1 |
HD13 |
60.0 |
180.0 |
| CD2 |
CG2 |
CB |
HG2 |
112.2 |
120.0 |
| CB |
CG2 |
CD2 |
CE |
72.1 |
185.0 |
| CB |
CG2 |
CD2 |
HD22 |
192.1 |
305.0 |
| CB |
CG2 |
CD2 |
HD23 |
312.1 |
65.1 |
| HB |
CB |
CA |
HA |
302.7 |
299.4 |
| CA |
CB |
HB |
OG1 |
240.2 |
240.0 |
| CA |
CB |
HB |
CG2 |
120.8 |
120.0 |
| OG1 |
CB |
HB |
CG2 |
240.6 |
240.0 |
| HB |
CB |
OG1 |
HG1 |
63.2 |
180.0 |
| HB |
CB |
CG2 |
CD1 |
71.1 |
56.5 |
| HB |
CB |
CG2 |
CD2 |
298.8 |
296.4 |
| HB |
CB |
CG2 |
HG2 |
186.5 |
176.4 |
| HG1 |
OG1 |
CB |
CG2 |
305.7 |
60.0 |
| HG1 |
OG1 |
CB |
HB |
63.2 |
180.0 |
| CD1 |
CG2 |
CB |
HB |
71.1 |
56.5 |
| CB |
CG2 |
CD1 |
CD2 |
225.2 |
240.0 |
| CB |
CG2 |
CD1 |
HG2 |
111.5 |
119.9 |
| CD2 |
CG2 |
CD1 |
HG2 |
246.3 |
240.0 |
| CD1 |
CG2 |
CD2 |
CE |
298.8 |
65.0 |
| CD1 |
CG2 |
CD2 |
HD22 |
58.7 |
185.0 |
| CD1 |
CG2 |
CD2 |
HD23 |
178.7 |
305.0 |
| HD11 |
CD1 |
CG2 |
HD12 |
240.0 |
239.9 |
| HD11 |
CD1 |
CG2 |
HD13 |
120.0 |
120.0 |
| HD12 |
CD1 |
CG2 |
HD13 |
240.0 |
240.1 |
| CD2 |
CG2 |
CB |
HB |
298.8 |
296.4 |
| CB |
CG2 |
CD2 |
CD1 |
133.3 |
120.0 |
| CB |
CG2 |
CD2 |
HG2 |
249.4 |
240.1 |
| CD1 |
CG2 |
CD2 |
HG2 |
116.0 |
120.1 |
| CD2 |
CG2 |
CD1 |
HD11 |
314.7 |
60.0 |
| CD2 |
CG2 |
CD1 |
HD12 |
74.8 |
180.1 |
| CD2 |
CG2 |
CD1 |
HD13 |
194.8 |
300.0 |
| CE |
CD2 |
CG2 |
HD22 |
240.0 |
240.0 |
| CE |
CD2 |
CG2 |
HD23 |
120.0 |
120.0 |
| CG2 |
CD2 |
CE |
CZ |
261.6 |
125.1 |
| CG2 |
CD2 |
CE |
HE |
81.6 |
305.0 |
| HD22 |
CD2 |
CG2 |
HD23 |
240.0 |
240.0 |
| HG2 |
CG2 |
CB |
HB |
186.5 |
176.4 |
| CB |
CG2 |
HG2 |
CD1 |
240.2 |
240.0 |
| CB |
CG2 |
HG2 |
CD2 |
121.6 |
120.0 |
| CD1 |
CG2 |
HG2 |
CD2 |
241.3 |
239.9 |
| HG2 |
CG2 |
CD1 |
HD11 |
68.5 |
180.0 |
| HG2 |
CG2 |
CD1 |
HD12 |
188.5 |
300.1 |
| HG2 |
CG2 |
CD1 |
HD13 |
308.5 |
60.0 |
| HG2 |
CG2 |
CD2 |
CE |
182.7 |
305.0 |
| HG2 |
CG2 |
CD2 |
HD22 |
302.7 |
65.0 |
| HG2 |
CG2 |
CD2 |
HD23 |
62.7 |
185.0 |
| HD11 |
CD1 |
CG2 |
CD2 |
314.7 |
60.0 |
| HD11 |
CD1 |
CG2 |
HG2 |
68.5 |
180.0 |
| CG2 |
CD1 |
HD11 |
HD12 |
120.0 |
120.1 |
| CG2 |
CD1 |
HD11 |
HD13 |
240.0 |
240.1 |
| HD12 |
CD1 |
HD11 |
HD13 |
120.0 |
120.0 |
| HD12 |
CD1 |
CG2 |
CD2 |
74.8 |
180.1 |
| HD12 |
CD1 |
CG2 |
HG2 |
188.5 |
300.1 |
| CG2 |
CD1 |
HD12 |
HD11 |
240.0 |
240.0 |
| CG2 |
CD1 |
HD12 |
HD13 |
119.9 |
119.9 |
| HD11 |
CD1 |
HD12 |
HD13 |
240.0 |
240.0 |
| HD13 |
CD1 |
CG2 |
CD2 |
194.8 |
300.0 |
| HD13 |
CD1 |
CG2 |
HG2 |
308.5 |
60.0 |
| CG2 |
CD1 |
HD13 |
HD11 |
120.0 |
119.9 |
| CG2 |
CD1 |
HD13 |
HD12 |
240.0 |
240.0 |
| HD11 |
CD1 |
HD13 |
HD12 |
120.0 |
120.1 |
| CE |
CD2 |
CG2 |
HG2 |
182.7 |
305.0 |
| CG2 |
CD2 |
CE |
HD22 |
120.0 |
120.0 |
| CG2 |
CD2 |
CE |
HD23 |
240.0 |
240.0 |
| HD22 |
CD2 |
CE |
HD23 |
120.0 |
120.1 |
| CZ |
CE |
CD2 |
HE |
180.0 |
180.1 |
| CD2 |
CE |
CZ |
CH |
181.8 |
180.0 |
| CD2 |
CE |
CZ |
HZ |
1.8 |
359.9 |
| HD22 |
CD2 |
CG2 |
HG2 |
302.7 |
65.0 |
| CG2 |
CD2 |
HD22 |
CE |
235.1 |
240.0 |
| CG2 |
CD2 |
HD22 |
HD23 |
117.5 |
120.0 |
| CE |
CD2 |
HD22 |
HD23 |
242.4 |
240.0 |
| HD22 |
CD2 |
CE |
CZ |
141.6 |
5.1 |
| HD22 |
CD2 |
CE |
HE |
321.6 |
185.0 |
| HD23 |
CD2 |
CG2 |
HG2 |
62.7 |
185.0 |
| CG2 |
CD2 |
HD23 |
CE |
124.9 |
120.0 |
| CG2 |
CD2 |
HD23 |
HD22 |
242.5 |
240.0 |
| CE |
CD2 |
HD23 |
HD22 |
117.5 |
120.0 |
| HD23 |
CD2 |
CE |
CZ |
21.5 |
245.0 |
| HD23 |
CD2 |
CE |
HE |
201.5 |
64.9 |
| CZ |
CE |
CD2 |
HD22 |
141.6 |
5.1 |
| CZ |
CE |
CD2 |
HD23 |
21.5 |
245.0 |
| CD2 |
CE |
CZ |
HE |
180.0 |
179.9 |
| CH |
CZ |
CE |
HZ |
180.0 |
180.1 |
| CE |
CZ |
CH |
HH1 |
180.0 |
180.0 |
| CE |
CZ |
CH |
HH2 |
300.0 |
299.9 |
| CE |
CZ |
CH |
HH3 |
60.0 |
60.0 |
| HE |
CE |
CD2 |
HD22 |
321.6 |
185.0 |
| HE |
CE |
CD2 |
HD23 |
201.5 |
64.9 |
| CD2 |
CE |
HE |
CZ |
180.0 |
180.1 |
| HE |
CE |
CZ |
CH |
1.8 |
0.1 |
| HE |
CE |
CZ |
HZ |
181.8 |
180.0 |
| CH |
CZ |
CE |
HE |
1.8 |
0.1 |
| CE |
CZ |
CH |
HZ |
180.0 |
179.9 |
| HH1 |
CH |
CZ |
HH2 |
240.0 |
240.0 |
| HH1 |
CH |
CZ |
HH3 |
120.0 |
120.0 |
| HH2 |
CH |
CZ |
HH3 |
240.0 |
239.9 |
| HZ |
CZ |
CE |
HE |
181.8 |
180.0 |
| CE |
CZ |
HZ |
CH |
180.0 |
180.1 |
| HZ |
CZ |
CH |
HH1 |
0.0 |
0.1 |
| HZ |
CZ |
CH |
HH2 |
120.0 |
120.0 |
| HZ |
CZ |
CH |
HH3 |
240.0 |
240.1 |
| HH1 |
CH |
CZ |
HZ |
0.0 |
0.1 |
| CZ |
CH |
HH1 |
HH2 |
120.0 |
120.0 |
| CZ |
CH |
HH1 |
HH3 |
240.0 |
240.0 |
| HH2 |
CH |
HH1 |
HH3 |
120.0 |
120.0 |
| HH2 |
CH |
CZ |
HZ |
120.0 |
120.0 |
| CZ |
CH |
HH2 |
HH1 |
240.0 |
240.0 |
| CZ |
CH |
HH2 |
HH3 |
120.0 |
120.0 |
| HH1 |
CH |
HH2 |
HH3 |
240.0 |
240.0 |
| HH3 |
CH |
CZ |
HZ |
240.0 |
240.1 |
| CZ |
CH |
HH3 |
HH1 |
120.0 |
119.9 |
| CZ |
CH |
HH3 |
HH2 |
240.0 |
240.0 |
| HH1 |
CH |
HH3 |
HH2 |
120.0 |
120.0 |