PDB Chemical Component BMQ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for BMQ

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P O1P 1.527 1.480
P O2P 1.487 1.609
P O3P 1.488 1.610
P O5' 1.584 1.610
O2P HOP2 0.950 0.966
O3P HOP3 0.950 0.967
O5' C5' 1.427 1.429
C5' C4' 1.462 1.530
C5' H5'1 1.100 1.090
C5' H5'2 1.100 1.090
C4' O4' 1.543 1.438
C4' C3' 1.500 1.541
C4' H4' 1.100 1.090
O4' C1' 1.454 1.443
C3' O3' 1.465 1.429
C3' C2' 1.550 1.548
C3' H3' 1.100 1.090
O3' HO3' 0.950 0.967
C2' O2' 1.363 1.429
C2' C1' 1.519 1.551
C2' H2' 1.100 1.090
O2' HO2' 0.950 0.966
C1' N1 1.553 1.465
C1' H1' 1.100 1.089
N1 C2 1.414 1.338
N1 C6 1.291 1.350
C2 O2 1.323 1.214
C2 N3 1.383 1.338
N3 C4 1.371 1.350
N3 HN3 1.000 0.970
C4 O4 1.238 1.213
C4 C5 1.432 1.516
C5 C6 1.381 1.517
C5 H51 1.100 1.090
C5 H52 1.100 1.089
C6 O1 1.365 1.212

Bond Angles for BMQ

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1P P O2P 115.5 109.5
O1P P O3P 109.2 109.5
O1P P O5' 104.1 109.5
O2P P O3P 109.1 109.5
O2P P O5' 110.4 109.5
P O2P HOP2 109.5 114.0
O3P P O5' 108.4 109.4
P O3P HOP3 109.5 114.0
P O5' C5' 116.6 123.0
O5' C5' C4' 116.3 109.4
O5' C5' H5'1 107.3 109.5
O5' C5' H5'2 107.3 109.5
C4' C5' H5'1 107.3 109.5
C4' C5' H5'2 107.2 109.5
C5' C4' O4' 113.2 109.9
C5' C4' C3' 121.8 109.8
C5' C4' H4' 96.2 109.9
H5'1 C5' H5'2 111.6 109.5
O4' C4' C3' 108.0 107.3
O4' C4' H4' 113.8 109.9
C4' O4' C1' 105.9 107.0
C3' C4' H4' 102.9 110.0
C4' C3' O3' 108.2 110.5
C4' C3' C2' 105.2 104.2
C4' C3' H3' 112.7 110.5
O4' C1' C2' 108.3 103.5
O4' C1' N1 111.7 110.6
O4' C1' H1' 110.7 110.7
O3' C3' C2' 108.5 110.5
O3' C3' H3' 109.7 110.4
C3' O3' HO3' 109.5 114.1
C2' C3' H3' 112.4 110.6
C3' C2' O2' 117.1 110.9
C3' C2' C1' 103.3 102.1
C3' C2' H2' 109.8 110.9
O2' C2' C1' 112.5 110.9
O2' C2' H2' 100.0 110.8
C2' O2' HO2' 109.5 114.0
C1' C2' H2' 114.6 110.9
C2' C1' N1 114.6 110.6
C2' C1' H1' 107.5 110.6
N1 C1' H1' 103.8 110.7
C1' N1 C2 119.2 119.1
C1' N1 C6 119.9 119.0
C2 N1 C6 120.9 121.9
N1 C2 O2 122.9 117.6
N1 C2 N3 117.6 124.8
N1 C6 C5 124.0 117.5
N1 C6 O1 119.1 121.2
O2 C2 N3 119.5 117.6
C2 N3 C4 121.7 121.9
C2 N3 HN3 119.1 119.0
C4 N3 HN3 119.2 119.1
N3 C4 O4 118.7 121.2
N3 C4 C5 118.9 117.6
O4 C4 C5 122.4 121.2
C4 C5 C6 117.0 116.2
C4 C5 H51 107.0 108.1
C4 C5 H52 107.0 108.2
C6 C5 H51 107.0 108.3
C6 C5 H52 107.0 107.9
C5 C6 O1 116.9 121.2
H51 C5 H52 111.8 107.8

Torsion Angles for BMQ

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2P P O1P O3P 123.3 240.0
O2P P O1P O5' 238.9 120.0
O1P P O2P HOP2 360.0 180.0
O3P P O1P O5' 115.6 240.0
O1P P O3P HOP3 0.0 300.0
O1P P O5' C5' 181.8 55.0
O1P P O2P O3P 236.7 120.0
O1P P O2P O5' 117.7 240.0
O3P P O2P O5' 241.0 120.0
O2P P O3P HOP3 233.0 60.0
O2P P O5' C5' 306.3 295.0
O1P P O3P O2P 127.0 240.0
O1P P O3P O5' 247.2 120.0
O2P P O3P O5' 120.2 240.0
O3P P O2P HOP2 123.3 60.0
O3P P O5' C5' 65.6 175.0
O1P P O5' O2P 235.5 120.0
O1P P O5' O3P 116.1 240.0
O2P P O5' O3P 240.6 120.0
O5' P O2P HOP2 242.3 300.0
O5' P O3P HOP3 112.8 180.0
P O5' C5' C4' 183.9 180.0
P O5' C5' H5'1 303.9 300.0
P O5' C5' H5'2 63.9 60.0
HOP2 O2P P O3P 123.3 60.0
HOP2 O2P P O5' 242.3 300.0
HOP3 O3P P O5' 112.8 180.0
C4' C5' O5' H5'1 240.0 240.0
C4' C5' O5' H5'2 120.0 120.0
O5' C5' C4' O4' 274.7 66.5
O5' C5' C4' C3' 46.1 184.3
O5' C5' C4' H4' 155.5 305.5
H5'1 C5' O5' H5'2 240.0 240.0
O5' C5' C4' H5'1 120.0 120.0
O5' C5' C4' H5'2 240.0 240.0
H5'1 C5' C4' H5'2 120.0 120.0
O4' C4' C5' C3' 228.6 242.2
O4' C4' C5' H4' 119.3 121.0
C5' C4' O4' C1' 143.2 145.9
C3' C4' C5' H4' 250.6 238.8
C5' C4' C3' O3' 124.4 119.9
C5' C4' C3' C2' 240.2 238.6
C5' C4' C3' H3' 3.0 357.4
O5' C5' H5'1 C4' 234.4 240.0
O5' C5' H5'1 H5'2 117.2 120.0
C4' C5' H5'1 H5'2 242.8 240.0
H5'1 C5' C4' O4' 154.7 306.5
H5'1 C5' C4' C3' 286.1 64.3
H5'1 C5' C4' H4' 35.5 185.5
O5' C5' H5'2 C4' 125.6 120.0
O5' C5' H5'2 H5'1 242.8 240.0
C4' C5' H5'2 H5'1 117.2 120.0
H5'2 C5' C4' O4' 34.7 186.5
H5'2 C5' C4' C3' 166.1 304.3
H5'2 C5' C4' H4' 275.5 65.4
O4' C4' C5' H5'1 154.7 306.5
O4' C4' C5' H5'2 34.7 186.5
C5' C4' O4' C3' 137.9 119.4
C5' C4' O4' H4' 251.5 239.0
C3' C4' O4' H4' 113.6 119.6
O4' C4' C3' O3' 257.9 239.3
O4' C4' C3' C2' 13.7 357.9
O4' C4' C3' H3' 136.5 116.8
C4' O4' C1' C2' 337.1 319.9
C4' O4' C1' N1 210.0 201.4
C4' O4' C1' H1' 94.8 78.4
C3' C4' C5' H5'1 286.1 64.3
C3' C4' C5' H5'2 166.1 304.3
C5' C4' C3' O4' 226.5 240.6
C5' C4' C3' H4' 105.8 121.1
O4' C4' C3' H4' 239.3 240.5
C3' C4' O4' C1' 5.3 26.6
O3' C3' C4' C2' 244.2 241.3
O3' C3' C4' H3' 121.4 122.5
C4' C3' O3' HO3' 180.0 179.9
C2' C3' C4' H3' 237.2 241.2
C4' C3' C2' O2' 209.1 221.0
C4' C3' C2' C1' 333.3 339.1
C4' C3' C2' H2' 96.0 97.4
H4' C4' C5' H5'1 35.5 185.5
H4' C4' C5' H5'2 275.5 65.4
C5' C4' H4' O4' 118.7 121.0
C5' C4' H4' C3' 235.3 238.9
O4' C4' H4' C3' 116.6 117.9
H4' C4' O4' C1' 251.7 267.0
H4' C4' C3' O3' 18.6 358.8
H4' C4' C3' C2' 134.4 117.5
H4' C4' C3' H3' 257.2 236.3
C1' O4' C4' C3' 5.3 26.6
C1' O4' C4' H4' 251.7 267.0
C3' C2' C1' O4' 31.1 37.0
O2' C2' C1' O4' 158.4 155.2
O4' C1' C2' H2' 271.8 278.8
C2' C1' O4' N1 127.1 118.4
C2' C1' O4' H1' 242.3 241.5
N1 C1' O4' H1' 115.2 123.0
O4' C1' N1 C2 67.9 53.5
O4' C1' N1 C6 247.7 233.2
O3' C3' C4' H4' 18.6 358.8
C4' C3' O3' C2' 113.6 114.8
C4' C3' O3' H3' 236.8 237.4
C2' C3' O3' H3' 123.1 122.6
O3' C3' C2' O2' 324.6 339.6
O3' C3' C2' C1' 88.9 97.8
O3' C3' C2' H2' 211.6 216.0
C2' C3' C4' H4' 134.4 117.5
C4' C3' C2' O3' 244.4 241.3
C4' C3' C2' H3' 123.0 118.8
O4' C1' C2' C3' 31.1 37.0
O3' C3' C2' H3' 238.5 237.5
C2' C3' O3' HO3' 66.4 65.1
O2' C2' C3' C1' 235.7 241.8
O2' C2' C3' H2' 113.1 123.6
C3' C2' O2' HO2' 180.0 298.5
C1' C2' C3' H2' 237.3 241.8
C3' C2' C1' N1 156.6 155.5
C3' C2' C1' H1' 271.5 278.5
H3' C3' C4' H4' 257.2 236.3
C4' C3' H3' O3' 120.5 122.5
C4' C3' H3' C2' 241.3 245.1
O3' C3' H3' C2' 120.8 122.6
H3' C3' O3' HO3' 303.2 302.5
H3' C3' C2' O2' 86.1 102.2
H3' C3' C2' C1' 210.4 220.3
H3' C3' C2' H2' 333.0 338.6
HO3' O3' C3' C2' 66.4 65.1
HO3' O3' C3' H3' 303.2 302.5
O4' C1' C2' O2' 158.4 155.2
O2' C2' C3' H3' 86.1 102.2
C3' C2' O2' C1' 119.5 112.7
C3' C2' O2' H2' 241.6 236.3
C1' C2' O2' H2' 122.0 123.7
O2' C2' C1' N1 283.9 273.7
O2' C2' C1' H1' 38.7 36.7
O4' C1' C2' N1 234.5 241.5
O4' C1' C2' H1' 119.7 118.6
C1' C2' C3' H3' 210.4 220.3
C3' C2' C1' O2' 232.7 241.8
C3' C2' C1' H2' 119.4 118.2
O2' C2' C1' H2' 246.6 236.4
C1' C2' O2' HO2' 60.5 185.8
N1 C1' C2' H1' 245.1 237.0
C2' C1' N1 C2 304.2 299.5
C2' C1' N1 C6 124.1 119.2
H2' C2' C3' H3' 333.0 338.6
C3' C2' H2' O2' 123.7 123.7
C3' C2' H2' C1' 244.3 247.3
O2' C2' H2' C1' 120.6 123.6
H2' C2' O2' HO2' 298.4 62.2
H2' C2' C1' N1 37.3 37.3
H2' C2' C1' H1' 152.1 160.3
HO2' O2' C2' C1' 60.5 185.8
HO2' O2' C2' H2' 298.4 62.2
O4' C1' N1 C2' 123.7 114.0
O4' C1' N1 H1' 240.7 237.0
N1 C1' C2' H2' 37.3 37.3
C2' C1' N1 H1' 117.0 123.0
C2 N1 C1' C6 180.2 180.3
C1' N1 C2 O2 359.7 0.0
C1' N1 C2 N3 179.7 180.0
C1' N1 C6 C5 180.3 179.8
C1' N1 C6 O1 0.4 0.1
O4' C1' H1' C2' 241.9 245.9
O4' C1' H1' N1 120.0 123.0
H1' C1' C2' H2' 152.1 160.3
C2' C1' H1' N1 238.2 237.1
H1' C1' N1 C2 187.2 176.5
H1' C1' N1 C6 7.1 356.2
C2 N1 C1' H1' 187.2 176.5
C1' N1 C2 C6 179.8 179.7
C2 N1 C6 C5 0.2 359.5
C2 N1 C6 O1 180.2 179.8
O2 C2 N1 N3 180.0 180.0
N1 C2 N3 C4 359.9 360.0
N1 C2 N3 HN3 179.9 180.0
C6 N1 C1' H1' 7.1 356.2
C1' N1 C6 C2 180.2 180.3
C6 N1 C2 O2 179.9 180.3
C6 N1 C2 N3 359.9 0.3
C4 C5 C6 N1 0.0 0.5
N1 C6 C5 H51 240.0 238.6
N1 C6 C5 H52 120.0 122.1
C5 C6 N1 O1 180.0 179.7
O2 C2 N1 C6 179.9 180.3
N1 C2 O2 N3 180.0 180.0
O2 C2 N3 C4 179.9 180.0
O2 C2 N3 HN3 359.8 0.0
N3 C2 N1 C6 359.9 0.3
N1 C2 N3 O2 180.0 180.0
C4 N3 C2 HN3 180.0 180.0
C2 N3 C4 O4 180.3 180.1
C2 N3 C4 C5 0.3 0.0
C2 N3 C4 HN3 180.0 180.0
O4 C4 N3 C5 180.0 180.1
N3 C4 C5 C6 359.7 359.8
N3 C4 C5 H51 119.7 121.7
N3 C4 C5 H52 239.7 238.2
C2 N3 HN3 C4 180.0 180.0
HN3 N3 C4 O4 0.3 0.1
HN3 N3 C4 C5 180.3 180.0
O4 C4 N3 HN3 0.3 0.1
N3 C4 O4 C5 180.0 179.9
O4 C4 C5 C6 179.8 179.7
O4 C4 C5 H51 299.8 301.7
O4 C4 C5 H52 59.8 58.2
N1 C6 C5 C4 0.0 0.5
C5 C4 N3 HN3 180.3 180.0
N3 C4 C5 O4 180.0 180.1
C6 C5 C4 H51 240.0 238.0
C6 C5 C4 H52 120.0 121.5
C4 C5 C6 O1 180.0 180.2
H51 C5 C4 H52 240.0 243.5
N1 C6 C5 O1 180.0 180.3
C4 C5 C6 H51 120.0 121.9
C4 C5 C6 H52 240.0 238.4
H51 C5 C6 H52 120.0 116.5
C4 C5 H51 C6 233.8 233.3
C4 C5 H51 H52 116.9 116.7
C6 C5 H51 H52 243.1 243.4
H51 C5 C6 O1 60.0 58.3
C4 C5 H52 C6 126.2 126.5
C4 C5 H52 H51 243.1 243.3
C6 C5 H52 H51 116.9 116.8
H52 C5 C6 O1 300.0 301.8
N1 C6 O1 C5 180.0 179.7
O1 C6 C5 H51 60.0 58.3
O1 C6 C5 H52 300.0 301.8