PDB Chemical Component BMP

Ideal Model

Chemical Description

Name 6-HYDROXYURIDINE-5'-PHOSPHATE
Formula C9 H13 N2 O10 P
Formal charge 0
Molecular weight 340.181 g/mol
Component type RNA LINKING

Chemical features

Atom count 35
Chiral atom count 4
Chiral atoms C4' C3' C2' C1'
Observed leaving atoms OP3 HO3'
Bond count 36
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 6-hydroxyuridine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,4R,5R)-3,4-dihydroxy-5-(6-hydroxy-2,4-dioxo-pyrimidin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C(=O)NC(=O)C=C2O
SMILES (CACTVS) O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)N2C(=O)NC(=O)C=C2O
Stereo SMILES (OpenEye) C1=C(N(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)O
InChI descriptor InChI=1S/C9H13N2O10P/c12-4-1-5(13)11(9(16)10-4)8-7(15)6(14)3(21-8)2-20-22(17,18)19/h1,3,6-8,13-15H,2H2,(H,10,12,16)(H2,17,18,19)/t3-,6-,7-,8-/m1/s1
InChIKey descriptor UDOBICLZEKUKCV-YXZULKJRSA-N

Status Information

Last modified 2011-06-04
Created 2000-01-14
Release status REL
Model PDB code 1DQX
Processing site RCSB