PDB Chemical Component BMP
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for BMP
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
P |
OP1 |
1.538 |
1.479 |
P |
OP2 |
1.534 |
1.609 |
P |
OP3 |
1.531 |
1.608 |
P |
O5' |
1.590 |
1.610 |
OP2 |
HOP2 |
0.950 |
0.968 |
OP3 |
HOP3 |
0.950 |
0.966 |
O5' |
C5' |
1.405 |
1.428 |
C5' |
C4' |
1.535 |
1.530 |
C5' |
H5' |
1.116 |
1.090 |
C5' |
H5'' |
1.114 |
1.090 |
C4' |
O4' |
1.421 |
1.447 |
C4' |
C3' |
1.523 |
1.544 |
C4' |
H4' |
1.115 |
1.090 |
O4' |
C1' |
1.421 |
1.443 |
C3' |
O3' |
1.411 |
1.429 |
C3' |
C2' |
1.492 |
1.544 |
C3' |
H3' |
1.116 |
1.091 |
O3' |
HO3' |
0.950 |
0.967 |
C2' |
O2' |
1.416 |
1.429 |
C2' |
C1' |
1.560 |
1.543 |
C2' |
H2' |
1.115 |
1.090 |
O2' |
HO2' |
0.950 |
0.967 |
C1' |
N1 |
1.506 |
1.464 |
C1' |
H1' |
1.115 |
1.090 |
N1 |
C2 |
1.464 |
1.345 |
N1 |
C6 |
1.516 |
1.372 |
C2 |
O2 |
1.222 |
1.216 |
C2 |
N3 |
1.403 |
1.345 |
N3 |
C4 |
1.397 |
1.348 |
N3 |
HN3 |
1.020 |
0.970 |
C4 |
O4 |
1.206 |
1.219 |
C4 |
C5 |
1.584 |
1.406 |
C5 |
C6 |
1.368 |
1.364 |
C5 |
H51 |
1.103 |
1.080 |
C6 |
O1 |
1.327 |
1.350 |
O1 |
HO1 |
0.949 |
0.966 |
Bond Angles for BMP
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
OP1 |
P |
OP2 |
109.7 |
109.5 |
OP1 |
P |
OP3 |
112.6 |
109.5 |
OP1 |
P |
O5' |
101.3 |
109.4 |
OP2 |
P |
OP3 |
112.8 |
109.5 |
OP2 |
P |
O5' |
107.9 |
109.5 |
P |
OP2 |
HOP2 |
109.7 |
106.8 |
OP3 |
P |
O5' |
111.8 |
109.5 |
P |
OP3 |
HOP3 |
112.6 |
106.9 |
P |
O5' |
C5' |
122.9 |
106.8 |
O5' |
C5' |
C4' |
112.3 |
109.5 |
O5' |
C5' |
H5' |
111.1 |
109.5 |
O5' |
C5' |
H5'' |
111.2 |
109.5 |
C4' |
C5' |
H5' |
111.2 |
109.4 |
C4' |
C5' |
H5'' |
111.2 |
109.4 |
C5' |
C4' |
O4' |
115.5 |
110.4 |
C5' |
C4' |
C3' |
120.6 |
110.8 |
C5' |
C4' |
H4' |
96.5 |
110.3 |
H5' |
C5' |
H5'' |
99.2 |
109.4 |
O4' |
C4' |
C3' |
114.7 |
104.7 |
O4' |
C4' |
H4' |
106.5 |
110.3 |
C4' |
O4' |
C1' |
105.6 |
105.4 |
C3' |
C4' |
H4' |
97.9 |
110.3 |
C4' |
C3' |
O3' |
108.6 |
110.5 |
C4' |
C3' |
C2' |
100.9 |
104.2 |
C4' |
C3' |
H3' |
116.1 |
110.5 |
O4' |
C1' |
C2' |
107.7 |
104.9 |
O4' |
C1' |
N1 |
110.6 |
110.5 |
O4' |
C1' |
H1' |
114.1 |
110.4 |
O3' |
C3' |
C2' |
111.6 |
110.5 |
O3' |
C3' |
H3' |
106.3 |
110.4 |
C3' |
O3' |
HO3' |
108.6 |
106.8 |
C2' |
C3' |
H3' |
113.3 |
110.5 |
C3' |
C2' |
O2' |
118.6 |
110.5 |
C3' |
C2' |
C1' |
106.6 |
104.0 |
C3' |
C2' |
H2' |
109.6 |
110.5 |
O2' |
C2' |
C1' |
119.1 |
110.7 |
O2' |
C2' |
H2' |
92.8 |
110.5 |
C2' |
O2' |
HO2' |
118.6 |
106.8 |
C1' |
C2' |
H2' |
108.9 |
110.5 |
C2' |
C1' |
N1 |
119.4 |
110.4 |
C2' |
C1' |
H1' |
104.1 |
110.3 |
N1 |
C1' |
H1' |
100.8 |
110.3 |
C1' |
N1 |
C2 |
124.1 |
119.8 |
C1' |
N1 |
C6 |
117.6 |
119.8 |
C2 |
N1 |
C6 |
118.3 |
120.4 |
N1 |
C2 |
O2 |
124.2 |
119.5 |
N1 |
C2 |
N3 |
122.1 |
121.0 |
N1 |
C6 |
C5 |
120.7 |
119.5 |
N1 |
C6 |
O1 |
124.4 |
120.3 |
O2 |
C2 |
N3 |
113.7 |
119.5 |
C2 |
N3 |
C4 |
120.5 |
120.5 |
C2 |
N3 |
HN3 |
119.9 |
119.7 |
C4 |
N3 |
HN3 |
119.6 |
119.8 |
N3 |
C4 |
O4 |
117.5 |
120.3 |
N3 |
C4 |
C5 |
120.2 |
119.5 |
O4 |
C4 |
C5 |
122.2 |
120.2 |
C4 |
C5 |
C6 |
118.1 |
119.1 |
C4 |
C5 |
H51 |
127.9 |
120.5 |
C6 |
C5 |
H51 |
113.9 |
120.4 |
C5 |
C6 |
O1 |
114.9 |
120.2 |
C6 |
O1 |
HO1 |
124.4 |
106.8 |
Torsion Angles for BMP
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
OP2 |
P |
OP1 |
OP3 |
126.6 |
120.0 |
OP2 |
P |
OP1 |
O5' |
246.1 |
240.0 |
OP1 |
P |
OP2 |
HOP2 |
180.0 |
300.0 |
OP3 |
P |
OP1 |
O5' |
119.5 |
120.0 |
OP1 |
P |
OP3 |
HOP3 |
180.0 |
180.0 |
OP1 |
P |
O5' |
C5' |
174.8 |
60.0 |
OP1 |
P |
OP2 |
OP3 |
233.6 |
240.0 |
OP1 |
P |
OP2 |
O5' |
109.6 |
119.9 |
OP3 |
P |
OP2 |
O5' |
236.0 |
240.0 |
OP2 |
P |
OP3 |
HOP3 |
55.1 |
60.0 |
OP2 |
P |
O5' |
C5' |
290.1 |
180.0 |
OP1 |
P |
OP3 |
OP2 |
124.9 |
120.0 |
OP1 |
P |
OP3 |
O5' |
246.8 |
240.0 |
OP2 |
P |
OP3 |
O5' |
121.9 |
120.0 |
OP3 |
P |
OP2 |
HOP2 |
306.4 |
60.0 |
OP3 |
P |
O5' |
C5' |
54.7 |
300.0 |
OP1 |
P |
O5' |
OP2 |
244.7 |
240.1 |
OP1 |
P |
O5' |
OP3 |
120.1 |
120.1 |
OP2 |
P |
O5' |
OP3 |
235.3 |
240.0 |
O5' |
P |
OP2 |
HOP2 |
70.5 |
180.0 |
O5' |
P |
OP3 |
HOP3 |
293.2 |
300.0 |
P |
O5' |
C5' |
C4' |
201.5 |
180.0 |
P |
O5' |
C5' |
H5' |
326.7 |
60.0 |
P |
O5' |
C5' |
H5'' |
76.2 |
300.0 |
HOP2 |
OP2 |
P |
OP3 |
306.4 |
60.0 |
HOP2 |
OP2 |
P |
O5' |
70.5 |
180.0 |
HOP3 |
OP3 |
P |
O5' |
293.2 |
300.0 |
C4' |
C5' |
O5' |
H5' |
234.8 |
120.0 |
C4' |
C5' |
O5' |
H5'' |
125.3 |
240.0 |
O5' |
C5' |
C4' |
O4' |
280.3 |
61.4 |
O5' |
C5' |
C4' |
C3' |
65.3 |
176.9 |
O5' |
C5' |
C4' |
H4' |
168.5 |
299.3 |
H5' |
C5' |
O5' |
H5'' |
250.5 |
120.0 |
O5' |
C5' |
C4' |
H5' |
125.2 |
240.0 |
O5' |
C5' |
C4' |
H5'' |
234.7 |
120.1 |
H5' |
C5' |
C4' |
H5'' |
109.5 |
240.1 |
O4' |
C4' |
C5' |
C3' |
215.0 |
244.6 |
O4' |
C4' |
C5' |
H4' |
111.8 |
122.2 |
C5' |
C4' |
O4' |
C1' |
155.3 |
159.5 |
C3' |
C4' |
C5' |
H4' |
256.8 |
237.6 |
C5' |
C4' |
C3' |
O3' |
102.7 |
98.5 |
C5' |
C4' |
C3' |
C2' |
220.2 |
217.3 |
C5' |
C4' |
C3' |
H3' |
343.1 |
336.0 |
O5' |
C5' |
H5' |
C4' |
234.1 |
120.1 |
O5' |
C5' |
H5' |
H5'' |
117.1 |
240.0 |
C4' |
C5' |
H5' |
H5'' |
242.9 |
119.9 |
H5' |
C5' |
C4' |
O4' |
155.1 |
181.5 |
H5' |
C5' |
C4' |
C3' |
300.1 |
296.9 |
H5' |
C5' |
C4' |
H4' |
43.3 |
59.3 |
O5' |
C5' |
H5'' |
C4' |
125.9 |
239.9 |
O5' |
C5' |
H5'' |
H5' |
243.0 |
120.0 |
C4' |
C5' |
H5'' |
H5' |
117.1 |
240.1 |
H5'' |
C5' |
C4' |
O4' |
45.6 |
301.4 |
H5'' |
C5' |
C4' |
C3' |
190.6 |
56.8 |
H5'' |
C5' |
C4' |
H4' |
293.8 |
179.2 |
O4' |
C4' |
C5' |
H5' |
155.1 |
181.5 |
O4' |
C4' |
C5' |
H5'' |
45.6 |
301.4 |
C5' |
C4' |
O4' |
C3' |
147.1 |
119.2 |
C5' |
C4' |
O4' |
H4' |
254.2 |
237.8 |
C3' |
C4' |
O4' |
H4' |
107.1 |
118.6 |
O4' |
C4' |
C3' |
O3' |
248.0 |
217.5 |
O4' |
C4' |
C3' |
C2' |
5.5 |
336.2 |
O4' |
C4' |
C3' |
H3' |
128.4 |
95.0 |
C4' |
O4' |
C1' |
C2' |
341.9 |
319.6 |
C4' |
O4' |
C1' |
N1 |
209.8 |
200.7 |
C4' |
O4' |
C1' |
H1' |
97.0 |
78.5 |
C3' |
C4' |
C5' |
H5' |
300.1 |
296.9 |
C3' |
C4' |
C5' |
H5'' |
190.6 |
56.8 |
C5' |
C4' |
C3' |
O4' |
214.7 |
241.1 |
C5' |
C4' |
C3' |
H4' |
102.4 |
122.4 |
O4' |
C4' |
C3' |
H4' |
247.7 |
241.4 |
C3' |
C4' |
O4' |
C1' |
8.3 |
40.3 |
O3' |
C3' |
C4' |
C2' |
242.5 |
241.2 |
O3' |
C3' |
C4' |
H3' |
119.6 |
122.5 |
C4' |
C3' |
O3' |
HO3' |
180.0 |
178.1 |
C2' |
C3' |
C4' |
H3' |
237.1 |
241.3 |
C4' |
C3' |
C2' |
O2' |
206.5 |
241.1 |
C4' |
C3' |
C2' |
C1' |
344.3 |
360.0 |
C4' |
C3' |
C2' |
H2' |
101.9 |
118.5 |
H4' |
C4' |
C5' |
H5' |
43.3 |
59.3 |
H4' |
C4' |
C5' |
H5'' |
293.8 |
179.2 |
C5' |
C4' |
H4' |
O4' |
119.1 |
122.2 |
C5' |
C4' |
H4' |
C3' |
237.8 |
237.3 |
O4' |
C4' |
H4' |
C3' |
118.7 |
115.1 |
H4' |
C4' |
O4' |
C1' |
261.2 |
281.6 |
H4' |
C4' |
C3' |
O3' |
0.3 |
336.1 |
H4' |
C4' |
C3' |
C2' |
117.7 |
94.9 |
H4' |
C4' |
C3' |
H3' |
240.7 |
213.6 |
C1' |
O4' |
C4' |
C3' |
8.3 |
40.3 |
C1' |
O4' |
C4' |
H4' |
261.2 |
281.6 |
C3' |
C2' |
C1' |
O4' |
22.2 |
23.9 |
O2' |
C2' |
C1' |
O4' |
159.6 |
142.6 |
O4' |
C1' |
C2' |
H2' |
264.1 |
265.4 |
C2' |
C1' |
O4' |
N1 |
132.1 |
118.9 |
C2' |
C1' |
O4' |
H1' |
245.0 |
241.2 |
N1 |
C1' |
O4' |
H1' |
112.8 |
122.2 |
O4' |
C1' |
N1 |
C2 |
60.6 |
55.4 |
O4' |
C1' |
N1 |
C6 |
240.0 |
235.2 |
O3' |
C3' |
C4' |
H4' |
0.3 |
336.1 |
C4' |
C3' |
O3' |
C2' |
110.4 |
114.9 |
C4' |
C3' |
O3' |
H3' |
234.4 |
237.5 |
C2' |
C3' |
O3' |
H3' |
124.0 |
122.6 |
O3' |
C3' |
C2' |
O2' |
321.7 |
359.9 |
O3' |
C3' |
C2' |
C1' |
99.5 |
118.7 |
O3' |
C3' |
C2' |
H2' |
217.1 |
237.3 |
C2' |
C3' |
C4' |
H4' |
117.7 |
94.9 |
C4' |
C3' |
C2' |
O3' |
244.8 |
241.2 |
C4' |
C3' |
C2' |
H3' |
124.9 |
118.7 |
O4' |
C1' |
C2' |
C3' |
22.2 |
23.9 |
O3' |
C3' |
C2' |
H3' |
240.1 |
237.5 |
C2' |
C3' |
O3' |
HO3' |
69.6 |
63.3 |
O2' |
C2' |
C3' |
C1' |
222.3 |
241.2 |
O2' |
C2' |
C3' |
H2' |
104.7 |
122.6 |
C3' |
C2' |
O2' |
HO2' |
180.0 |
298.5 |
C1' |
C2' |
C3' |
H2' |
242.4 |
241.4 |
C3' |
C2' |
C1' |
N1 |
149.4 |
142.9 |
C3' |
C2' |
C1' |
H1' |
260.7 |
265.1 |
H3' |
C3' |
C4' |
H4' |
240.7 |
213.6 |
C4' |
C3' |
H3' |
O3' |
120.9 |
122.6 |
C4' |
C3' |
H3' |
C2' |
243.8 |
245.2 |
O3' |
C3' |
H3' |
C2' |
122.9 |
122.6 |
H3' |
C3' |
O3' |
HO3' |
305.6 |
300.7 |
H3' |
C3' |
C2' |
O2' |
81.7 |
122.4 |
H3' |
C3' |
C2' |
C1' |
219.4 |
241.3 |
H3' |
C3' |
C2' |
H2' |
337.0 |
359.8 |
HO3' |
O3' |
C3' |
C2' |
69.6 |
63.3 |
HO3' |
O3' |
C3' |
H3' |
305.6 |
300.7 |
O4' |
C1' |
C2' |
O2' |
159.6 |
142.6 |
O2' |
C2' |
C3' |
H3' |
81.7 |
122.4 |
C3' |
C2' |
O2' |
C1' |
132.4 |
114.7 |
C3' |
C2' |
O2' |
H2' |
245.9 |
237.4 |
C1' |
C2' |
O2' |
H2' |
113.4 |
122.7 |
O2' |
C2' |
C1' |
N1 |
286.8 |
261.6 |
O2' |
C2' |
C1' |
H1' |
38.1 |
23.8 |
O4' |
C1' |
C2' |
N1 |
232.8 |
241.0 |
O4' |
C1' |
C2' |
H1' |
121.5 |
118.9 |
C1' |
C2' |
C3' |
H3' |
219.4 |
241.3 |
C3' |
C2' |
C1' |
O2' |
222.6 |
241.3 |
C3' |
C2' |
C1' |
H2' |
118.1 |
118.6 |
O2' |
C2' |
C1' |
H2' |
255.5 |
237.3 |
C1' |
C2' |
O2' |
HO2' |
47.6 |
183.8 |
N1 |
C1' |
C2' |
H1' |
248.7 |
237.9 |
C2' |
C1' |
N1 |
C2 |
294.8 |
299.9 |
C2' |
C1' |
N1 |
C6 |
114.2 |
119.7 |
H2' |
C2' |
C3' |
H3' |
337.0 |
359.8 |
C3' |
C2' |
H2' |
O2' |
121.7 |
122.6 |
C3' |
C2' |
H2' |
C1' |
243.8 |
245.4 |
O2' |
C2' |
H2' |
C1' |
122.1 |
122.9 |
H2' |
C2' |
O2' |
HO2' |
294.1 |
61.1 |
H2' |
C2' |
C1' |
N1 |
31.3 |
24.4 |
H2' |
C2' |
C1' |
H1' |
142.6 |
146.5 |
HO2' |
O2' |
C2' |
C1' |
47.6 |
183.8 |
HO2' |
O2' |
C2' |
H2' |
294.1 |
61.1 |
O4' |
C1' |
N1 |
C2' |
125.8 |
115.5 |
O4' |
C1' |
N1 |
H1' |
238.9 |
237.7 |
N1 |
C1' |
C2' |
H2' |
31.3 |
24.4 |
C2' |
C1' |
N1 |
H1' |
113.1 |
122.2 |
C2 |
N1 |
C1' |
C6 |
180.6 |
180.3 |
C1' |
N1 |
C2 |
O2 |
358.7 |
0.0 |
C1' |
N1 |
C2 |
N3 |
178.0 |
180.0 |
C1' |
N1 |
C6 |
C5 |
182.3 |
179.7 |
C1' |
N1 |
C6 |
O1 |
0.4 |
0.3 |
O4' |
C1' |
H1' |
C2' |
242.8 |
244.5 |
O4' |
C1' |
H1' |
N1 |
118.6 |
122.3 |
H1' |
C1' |
C2' |
H2' |
142.6 |
146.5 |
C2' |
C1' |
H1' |
N1 |
235.8 |
237.8 |
H1' |
C1' |
N1 |
C2 |
181.7 |
177.7 |
H1' |
C1' |
N1 |
C6 |
1.2 |
357.5 |
C2 |
N1 |
C1' |
H1' |
181.7 |
177.7 |
C1' |
N1 |
C2 |
C6 |
179.4 |
179.7 |
C2 |
N1 |
C6 |
C5 |
1.7 |
359.4 |
C2 |
N1 |
C6 |
O1 |
179.8 |
180.1 |
O2 |
C2 |
N1 |
N3 |
180.6 |
180.1 |
N1 |
C2 |
N3 |
C4 |
359.2 |
0.1 |
N1 |
C2 |
N3 |
HN3 |
179.3 |
180.0 |
C6 |
N1 |
C1' |
H1' |
1.2 |
357.5 |
C1' |
N1 |
C6 |
C2 |
180.5 |
180.3 |
C6 |
N1 |
C2 |
O2 |
179.2 |
180.3 |
C6 |
N1 |
C2 |
N3 |
358.6 |
0.2 |
C4 |
C5 |
C6 |
N1 |
360.0 |
0.6 |
N1 |
C6 |
C5 |
H51 |
179.9 |
180.3 |
C5 |
C6 |
N1 |
O1 |
181.9 |
179.3 |
N1 |
C6 |
O1 |
HO1 |
180.1 |
179.4 |
O2 |
C2 |
N1 |
C6 |
179.2 |
180.3 |
N1 |
C2 |
O2 |
N3 |
179.4 |
179.9 |
O2 |
C2 |
N3 |
C4 |
178.7 |
180.0 |
O2 |
C2 |
N3 |
HN3 |
358.7 |
359.9 |
N3 |
C2 |
N1 |
C6 |
358.6 |
0.2 |
N1 |
C2 |
N3 |
O2 |
180.6 |
180.1 |
C4 |
N3 |
C2 |
HN3 |
180.0 |
180.1 |
C2 |
N3 |
C4 |
O4 |
178.4 |
180.0 |
C2 |
N3 |
C4 |
C5 |
2.5 |
360.0 |
C2 |
N3 |
C4 |
HN3 |
180.0 |
179.9 |
O4 |
C4 |
N3 |
C5 |
175.9 |
180.0 |
N3 |
C4 |
C5 |
C6 |
357.9 |
359.7 |
N3 |
C4 |
C5 |
H51 |
177.9 |
180.0 |
C2 |
N3 |
HN3 |
C4 |
180.0 |
180.1 |
HN3 |
N3 |
C4 |
O4 |
358.3 |
0.1 |
HN3 |
N3 |
C4 |
C5 |
182.5 |
180.1 |
O4 |
C4 |
N3 |
HN3 |
358.3 |
0.1 |
N3 |
C4 |
O4 |
C5 |
184.2 |
180.0 |
O4 |
C4 |
C5 |
C6 |
182.2 |
179.7 |
O4 |
C4 |
C5 |
H51 |
2.2 |
360.0 |
N1 |
C6 |
C5 |
C4 |
360.0 |
0.6 |
C5 |
C4 |
N3 |
HN3 |
182.5 |
180.1 |
N3 |
C4 |
C5 |
O4 |
175.7 |
180.0 |
C6 |
C5 |
C4 |
H51 |
180.0 |
179.7 |
C4 |
C5 |
C6 |
O1 |
181.7 |
180.0 |
N1 |
C6 |
C5 |
O1 |
178.3 |
180.7 |
C4 |
C5 |
C6 |
H51 |
180.0 |
180.3 |
C5 |
C6 |
O1 |
HO1 |
358.3 |
0.0 |
C4 |
C5 |
H51 |
C6 |
180.0 |
179.7 |
H51 |
C5 |
C6 |
O1 |
1.7 |
359.7 |
N1 |
C6 |
O1 |
C5 |
181.8 |
179.3 |
O1 |
C6 |
C5 |
H51 |
1.7 |
359.7 |