PDB Chemical Component BMP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for BMP

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.538 1.479
P OP2 1.534 1.609
P OP3 1.531 1.608
P O5' 1.590 1.610
OP2 HOP2 0.950 0.968
OP3 HOP3 0.950 0.966
O5' C5' 1.405 1.428
C5' C4' 1.535 1.530
C5' H5' 1.116 1.090
C5' H5'' 1.114 1.090
C4' O4' 1.421 1.447
C4' C3' 1.523 1.544
C4' H4' 1.115 1.090
O4' C1' 1.421 1.443
C3' O3' 1.411 1.429
C3' C2' 1.492 1.544
C3' H3' 1.116 1.091
O3' HO3' 0.950 0.967
C2' O2' 1.416 1.429
C2' C1' 1.560 1.543
C2' H2' 1.115 1.090
O2' HO2' 0.950 0.967
C1' N1 1.506 1.464
C1' H1' 1.115 1.090
N1 C2 1.464 1.345
N1 C6 1.516 1.372
C2 O2 1.222 1.216
C2 N3 1.403 1.345
N3 C4 1.397 1.348
N3 HN3 1.020 0.970
C4 O4 1.206 1.219
C4 C5 1.584 1.406
C5 C6 1.368 1.364
C5 H51 1.103 1.080
C6 O1 1.327 1.350
O1 HO1 0.949 0.966

Bond Angles for BMP

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 109.7 109.5
OP1 P OP3 112.6 109.5
OP1 P O5' 101.3 109.4
OP2 P OP3 112.8 109.5
OP2 P O5' 107.9 109.5
P OP2 HOP2 109.7 106.8
OP3 P O5' 111.8 109.5
P OP3 HOP3 112.6 106.9
P O5' C5' 122.9 106.8
O5' C5' C4' 112.3 109.5
O5' C5' H5' 111.1 109.5
O5' C5' H5'' 111.2 109.5
C4' C5' H5' 111.2 109.4
C4' C5' H5'' 111.2 109.4
C5' C4' O4' 115.5 110.4
C5' C4' C3' 120.6 110.8
C5' C4' H4' 96.5 110.3
H5' C5' H5'' 99.2 109.4
O4' C4' C3' 114.7 104.7
O4' C4' H4' 106.5 110.3
C4' O4' C1' 105.6 105.4
C3' C4' H4' 97.9 110.3
C4' C3' O3' 108.6 110.5
C4' C3' C2' 100.9 104.2
C4' C3' H3' 116.1 110.5
O4' C1' C2' 107.7 104.9
O4' C1' N1 110.6 110.5
O4' C1' H1' 114.1 110.4
O3' C3' C2' 111.6 110.5
O3' C3' H3' 106.3 110.4
C3' O3' HO3' 108.6 106.8
C2' C3' H3' 113.3 110.5
C3' C2' O2' 118.6 110.5
C3' C2' C1' 106.6 104.0
C3' C2' H2' 109.6 110.5
O2' C2' C1' 119.1 110.7
O2' C2' H2' 92.8 110.5
C2' O2' HO2' 118.6 106.8
C1' C2' H2' 108.9 110.5
C2' C1' N1 119.4 110.4
C2' C1' H1' 104.1 110.3
N1 C1' H1' 100.8 110.3
C1' N1 C2 124.1 119.8
C1' N1 C6 117.6 119.8
C2 N1 C6 118.3 120.4
N1 C2 O2 124.2 119.5
N1 C2 N3 122.1 121.0
N1 C6 C5 120.7 119.5
N1 C6 O1 124.4 120.3
O2 C2 N3 113.7 119.5
C2 N3 C4 120.5 120.5
C2 N3 HN3 119.9 119.7
C4 N3 HN3 119.6 119.8
N3 C4 O4 117.5 120.3
N3 C4 C5 120.2 119.5
O4 C4 C5 122.2 120.2
C4 C5 C6 118.1 119.1
C4 C5 H51 127.9 120.5
C6 C5 H51 113.9 120.4
C5 C6 O1 114.9 120.2
C6 O1 HO1 124.4 106.8

Torsion Angles for BMP

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 OP3 126.6 120.0
OP2 P OP1 O5' 246.1 240.0
OP1 P OP2 HOP2 180.0 300.0
OP3 P OP1 O5' 119.5 120.0
OP1 P OP3 HOP3 180.0 180.0
OP1 P O5' C5' 174.8 60.0
OP1 P OP2 OP3 233.6 240.0
OP1 P OP2 O5' 109.6 119.9
OP3 P OP2 O5' 236.0 240.0
OP2 P OP3 HOP3 55.1 60.0
OP2 P O5' C5' 290.1 180.0
OP1 P OP3 OP2 124.9 120.0
OP1 P OP3 O5' 246.8 240.0
OP2 P OP3 O5' 121.9 120.0
OP3 P OP2 HOP2 306.4 60.0
OP3 P O5' C5' 54.7 300.0
OP1 P O5' OP2 244.7 240.1
OP1 P O5' OP3 120.1 120.1
OP2 P O5' OP3 235.3 240.0
O5' P OP2 HOP2 70.5 180.0
O5' P OP3 HOP3 293.2 300.0
P O5' C5' C4' 201.5 180.0
P O5' C5' H5' 326.7 60.0
P O5' C5' H5'' 76.2 300.0
HOP2 OP2 P OP3 306.4 60.0
HOP2 OP2 P O5' 70.5 180.0
HOP3 OP3 P O5' 293.2 300.0
C4' C5' O5' H5' 234.8 120.0
C4' C5' O5' H5'' 125.3 240.0
O5' C5' C4' O4' 280.3 61.4
O5' C5' C4' C3' 65.3 176.9
O5' C5' C4' H4' 168.5 299.3
H5' C5' O5' H5'' 250.5 120.0
O5' C5' C4' H5' 125.2 240.0
O5' C5' C4' H5'' 234.7 120.1
H5' C5' C4' H5'' 109.5 240.1
O4' C4' C5' C3' 215.0 244.6
O4' C4' C5' H4' 111.8 122.2
C5' C4' O4' C1' 155.3 159.5
C3' C4' C5' H4' 256.8 237.6
C5' C4' C3' O3' 102.7 98.5
C5' C4' C3' C2' 220.2 217.3
C5' C4' C3' H3' 343.1 336.0
O5' C5' H5' C4' 234.1 120.1
O5' C5' H5' H5'' 117.1 240.0
C4' C5' H5' H5'' 242.9 119.9
H5' C5' C4' O4' 155.1 181.5
H5' C5' C4' C3' 300.1 296.9
H5' C5' C4' H4' 43.3 59.3
O5' C5' H5'' C4' 125.9 239.9
O5' C5' H5'' H5' 243.0 120.0
C4' C5' H5'' H5' 117.1 240.1
H5'' C5' C4' O4' 45.6 301.4
H5'' C5' C4' C3' 190.6 56.8
H5'' C5' C4' H4' 293.8 179.2
O4' C4' C5' H5' 155.1 181.5
O4' C4' C5' H5'' 45.6 301.4
C5' C4' O4' C3' 147.1 119.2
C5' C4' O4' H4' 254.2 237.8
C3' C4' O4' H4' 107.1 118.6
O4' C4' C3' O3' 248.0 217.5
O4' C4' C3' C2' 5.5 336.2
O4' C4' C3' H3' 128.4 95.0
C4' O4' C1' C2' 341.9 319.6
C4' O4' C1' N1 209.8 200.7
C4' O4' C1' H1' 97.0 78.5
C3' C4' C5' H5' 300.1 296.9
C3' C4' C5' H5'' 190.6 56.8
C5' C4' C3' O4' 214.7 241.1
C5' C4' C3' H4' 102.4 122.4
O4' C4' C3' H4' 247.7 241.4
C3' C4' O4' C1' 8.3 40.3
O3' C3' C4' C2' 242.5 241.2
O3' C3' C4' H3' 119.6 122.5
C4' C3' O3' HO3' 180.0 178.1
C2' C3' C4' H3' 237.1 241.3
C4' C3' C2' O2' 206.5 241.1
C4' C3' C2' C1' 344.3 360.0
C4' C3' C2' H2' 101.9 118.5
H4' C4' C5' H5' 43.3 59.3
H4' C4' C5' H5'' 293.8 179.2
C5' C4' H4' O4' 119.1 122.2
C5' C4' H4' C3' 237.8 237.3
O4' C4' H4' C3' 118.7 115.1
H4' C4' O4' C1' 261.2 281.6
H4' C4' C3' O3' 0.3 336.1
H4' C4' C3' C2' 117.7 94.9
H4' C4' C3' H3' 240.7 213.6
C1' O4' C4' C3' 8.3 40.3
C1' O4' C4' H4' 261.2 281.6
C3' C2' C1' O4' 22.2 23.9
O2' C2' C1' O4' 159.6 142.6
O4' C1' C2' H2' 264.1 265.4
C2' C1' O4' N1 132.1 118.9
C2' C1' O4' H1' 245.0 241.2
N1 C1' O4' H1' 112.8 122.2
O4' C1' N1 C2 60.6 55.4
O4' C1' N1 C6 240.0 235.2
O3' C3' C4' H4' 0.3 336.1
C4' C3' O3' C2' 110.4 114.9
C4' C3' O3' H3' 234.4 237.5
C2' C3' O3' H3' 124.0 122.6
O3' C3' C2' O2' 321.7 359.9
O3' C3' C2' C1' 99.5 118.7
O3' C3' C2' H2' 217.1 237.3
C2' C3' C4' H4' 117.7 94.9
C4' C3' C2' O3' 244.8 241.2
C4' C3' C2' H3' 124.9 118.7
O4' C1' C2' C3' 22.2 23.9
O3' C3' C2' H3' 240.1 237.5
C2' C3' O3' HO3' 69.6 63.3
O2' C2' C3' C1' 222.3 241.2
O2' C2' C3' H2' 104.7 122.6
C3' C2' O2' HO2' 180.0 298.5
C1' C2' C3' H2' 242.4 241.4
C3' C2' C1' N1 149.4 142.9
C3' C2' C1' H1' 260.7 265.1
H3' C3' C4' H4' 240.7 213.6
C4' C3' H3' O3' 120.9 122.6
C4' C3' H3' C2' 243.8 245.2
O3' C3' H3' C2' 122.9 122.6
H3' C3' O3' HO3' 305.6 300.7
H3' C3' C2' O2' 81.7 122.4
H3' C3' C2' C1' 219.4 241.3
H3' C3' C2' H2' 337.0 359.8
HO3' O3' C3' C2' 69.6 63.3
HO3' O3' C3' H3' 305.6 300.7
O4' C1' C2' O2' 159.6 142.6
O2' C2' C3' H3' 81.7 122.4
C3' C2' O2' C1' 132.4 114.7
C3' C2' O2' H2' 245.9 237.4
C1' C2' O2' H2' 113.4 122.7
O2' C2' C1' N1 286.8 261.6
O2' C2' C1' H1' 38.1 23.8
O4' C1' C2' N1 232.8 241.0
O4' C1' C2' H1' 121.5 118.9
C1' C2' C3' H3' 219.4 241.3
C3' C2' C1' O2' 222.6 241.3
C3' C2' C1' H2' 118.1 118.6
O2' C2' C1' H2' 255.5 237.3
C1' C2' O2' HO2' 47.6 183.8
N1 C1' C2' H1' 248.7 237.9
C2' C1' N1 C2 294.8 299.9
C2' C1' N1 C6 114.2 119.7
H2' C2' C3' H3' 337.0 359.8
C3' C2' H2' O2' 121.7 122.6
C3' C2' H2' C1' 243.8 245.4
O2' C2' H2' C1' 122.1 122.9
H2' C2' O2' HO2' 294.1 61.1
H2' C2' C1' N1 31.3 24.4
H2' C2' C1' H1' 142.6 146.5
HO2' O2' C2' C1' 47.6 183.8
HO2' O2' C2' H2' 294.1 61.1
O4' C1' N1 C2' 125.8 115.5
O4' C1' N1 H1' 238.9 237.7
N1 C1' C2' H2' 31.3 24.4
C2' C1' N1 H1' 113.1 122.2
C2 N1 C1' C6 180.6 180.3
C1' N1 C2 O2 358.7 0.0
C1' N1 C2 N3 178.0 180.0
C1' N1 C6 C5 182.3 179.7
C1' N1 C6 O1 0.4 0.3
O4' C1' H1' C2' 242.8 244.5
O4' C1' H1' N1 118.6 122.3
H1' C1' C2' H2' 142.6 146.5
C2' C1' H1' N1 235.8 237.8
H1' C1' N1 C2 181.7 177.7
H1' C1' N1 C6 1.2 357.5
C2 N1 C1' H1' 181.7 177.7
C1' N1 C2 C6 179.4 179.7
C2 N1 C6 C5 1.7 359.4
C2 N1 C6 O1 179.8 180.1
O2 C2 N1 N3 180.6 180.1
N1 C2 N3 C4 359.2 0.1
N1 C2 N3 HN3 179.3 180.0
C6 N1 C1' H1' 1.2 357.5
C1' N1 C6 C2 180.5 180.3
C6 N1 C2 O2 179.2 180.3
C6 N1 C2 N3 358.6 0.2
C4 C5 C6 N1 360.0 0.6
N1 C6 C5 H51 179.9 180.3
C5 C6 N1 O1 181.9 179.3
N1 C6 O1 HO1 180.1 179.4
O2 C2 N1 C6 179.2 180.3
N1 C2 O2 N3 179.4 179.9
O2 C2 N3 C4 178.7 180.0
O2 C2 N3 HN3 358.7 359.9
N3 C2 N1 C6 358.6 0.2
N1 C2 N3 O2 180.6 180.1
C4 N3 C2 HN3 180.0 180.1
C2 N3 C4 O4 178.4 180.0
C2 N3 C4 C5 2.5 360.0
C2 N3 C4 HN3 180.0 179.9
O4 C4 N3 C5 175.9 180.0
N3 C4 C5 C6 357.9 359.7
N3 C4 C5 H51 177.9 180.0
C2 N3 HN3 C4 180.0 180.1
HN3 N3 C4 O4 358.3 0.1
HN3 N3 C4 C5 182.5 180.1
O4 C4 N3 HN3 358.3 0.1
N3 C4 O4 C5 184.2 180.0
O4 C4 C5 C6 182.2 179.7
O4 C4 C5 H51 2.2 360.0
N1 C6 C5 C4 360.0 0.6
C5 C4 N3 HN3 182.5 180.1
N3 C4 C5 O4 175.7 180.0
C6 C5 C4 H51 180.0 179.7
C4 C5 C6 O1 181.7 180.0
N1 C6 C5 O1 178.3 180.7
C4 C5 C6 H51 180.0 180.3
C5 C6 O1 HO1 358.3 0.0
C4 C5 H51 C6 180.0 179.7
H51 C5 C6 O1 1.7 359.7
N1 C6 O1 C5 181.8 179.3
O1 C6 C5 H51 1.7 359.7