PDB Chemical Component BMK
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for BMK
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C12 |
C8 |
1.396 |
1.390 |
C12 |
C13 |
1.403 |
1.379 |
C8 |
C2 |
1.383 |
1.373 |
C13 |
C9 |
1.395 |
1.390 |
C2 |
C3 |
1.456 |
1.439 |
C2 |
C |
1.485 |
1.511 |
C9 |
C3 |
1.382 |
1.382 |
C7 |
C |
1.524 |
1.531 |
C3 |
C1 |
1.471 |
1.501 |
C |
C5 |
1.488 |
1.518 |
C |
N |
1.448 |
1.496 |
C10 |
C5 |
1.386 |
1.380 |
C10 |
C14 |
1.391 |
1.384 |
C5 |
C6 |
1.488 |
1.380 |
C14 |
C15 |
1.391 |
1.383 |
N |
C1 |
1.455 |
1.493 |
C1 |
C4 |
1.523 |
1.531 |
C6 |
C4 |
1.521 |
1.507 |
C6 |
C11 |
1.388 |
1.386 |
C15 |
C11 |
1.391 |
1.381 |
C7 |
H1 |
1.101 |
1.090 |
C7 |
H2 |
1.100 |
1.090 |
C7 |
H3 |
1.100 |
1.090 |
C10 |
H4 |
1.080 |
1.080 |
C14 |
H5 |
1.080 |
1.080 |
C15 |
H6 |
1.080 |
1.080 |
C11 |
H7 |
1.080 |
1.080 |
C4 |
H8 |
1.100 |
1.090 |
C4 |
H9 |
1.100 |
1.090 |
C1 |
H10 |
1.100 |
1.090 |
N |
H11 |
1.000 |
1.009 |
C9 |
H13 |
1.080 |
1.080 |
C13 |
H14 |
1.080 |
1.081 |
C12 |
H15 |
1.080 |
1.080 |
C8 |
H16 |
1.080 |
1.081 |
Bond Angles for BMK
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C12 |
C8 |
C2 |
116.3 |
118.7 |
C8 |
C12 |
H15 |
118.9 |
119.2 |
C12 |
C8 |
H16 |
121.9 |
121.6 |
C12 |
C13 |
H14 |
118.9 |
119.2 |
C2 |
C8 |
H16 |
121.9 |
119.6 |
C13 |
C9 |
H13 |
121.7 |
121.6 |
C7 |
C |
C5 |
113.5 |
113.3 |
C7 |
C |
N |
115.0 |
113.4 |
C |
C7 |
H1 |
109.5 |
109.4 |
C |
C7 |
H2 |
109.5 |
109.5 |
C |
C7 |
H3 |
109.5 |
109.4 |
C3 |
C1 |
H10 |
113.6 |
111.3 |
C5 |
C |
N |
101.8 |
105.6 |
C |
C5 |
C6 |
117.5 |
119.5 |
C |
N |
C1 |
110.4 |
100.9 |
C |
N |
H11 |
109.3 |
111.0 |
C10 |
C5 |
C6 |
119.9 |
120.7 |
C10 |
C14 |
C15 |
121.2 |
119.8 |
C14 |
C10 |
H4 |
120.4 |
120.1 |
C10 |
C14 |
H5 |
119.4 |
120.1 |
C5 |
C6 |
C4 |
121.5 |
121.5 |
C5 |
C6 |
C11 |
118.4 |
119.4 |
C14 |
C15 |
C11 |
121.5 |
120.2 |
C15 |
C14 |
H5 |
119.3 |
120.1 |
C14 |
C15 |
H6 |
119.2 |
119.9 |
N |
C1 |
H10 |
113.8 |
111.3 |
C1 |
C4 |
H8 |
108.9 |
109.2 |
C1 |
C4 |
H9 |
108.9 |
109.2 |
C6 |
C4 |
H8 |
108.9 |
109.2 |
C6 |
C4 |
H9 |
108.9 |
109.2 |
C6 |
C11 |
H7 |
120.1 |
119.9 |
C11 |
C15 |
H6 |
119.3 |
119.9 |
C15 |
C11 |
H7 |
120.1 |
119.9 |
H1 |
C7 |
H2 |
109.5 |
109.5 |
H1 |
C7 |
H3 |
109.5 |
109.5 |
H2 |
C7 |
H3 |
109.4 |
109.5 |
H8 |
C4 |
H9 |
109.5 |
109.2 |
Torsion Angles for BMK
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C8 |
C12 |
C13 |
H14 |
180.1 |
180.4 |
C2 |
C8 |
C12 |
H16 |
180.0 |
179.8 |
C12 |
C13 |
C9 |
H13 |
179.7 |
180.1 |
C2 |
C8 |
C12 |
H15 |
180.1 |
179.9 |
C12 |
C8 |
C2 |
H16 |
180.0 |
180.2 |
C2 |
C3 |
C1 |
H10 |
142.6 |
142.9 |
C2 |
C |
C7 |
H1 |
180.0 |
299.6 |
C2 |
C |
C7 |
H2 |
300.0 |
59.6 |
C2 |
C |
C7 |
H3 |
60.0 |
179.7 |
C2 |
C |
N |
H11 |
158.0 |
156.3 |
C9 |
C3 |
C1 |
H10 |
323.4 |
323.5 |
C5 |
C |
C7 |
N |
243.3 |
239.5 |
C7 |
C |
C5 |
C6 |
160.1 |
159.4 |
C7 |
C |
N |
C1 |
159.4 |
163.2 |
C7 |
C |
N |
H11 |
279.6 |
280.0 |
H1 |
C7 |
C |
H2 |
240.0 |
240.0 |
H1 |
C7 |
C |
H3 |
120.0 |
119.9 |
H2 |
C7 |
C |
H3 |
240.0 |
239.9 |
N |
C1 |
C3 |
H10 |
239.0 |
239.5 |
C3 |
C1 |
C4 |
H8 |
197.6 |
308.8 |
C3 |
C1 |
C4 |
H9 |
317.0 |
189.4 |
C7 |
C |
C5 |
N |
124.2 |
124.8 |
C5 |
C |
C7 |
H1 |
309.8 |
60.7 |
C5 |
C |
C7 |
H2 |
69.8 |
180.7 |
C5 |
C |
C7 |
H3 |
189.7 |
300.7 |
C5 |
C |
N |
C1 |
282.6 |
288.0 |
C5 |
C |
N |
H11 |
42.8 |
44.8 |
C10 |
C5 |
C |
C6 |
181.1 |
180.0 |
C |
C5 |
C6 |
C4 |
0.7 |
359.3 |
C |
C5 |
C6 |
C11 |
180.7 |
179.5 |
C7 |
C |
N |
C5 |
236.8 |
235.3 |
N |
C |
C7 |
H1 |
66.5 |
181.1 |
N |
C |
C7 |
H2 |
186.5 |
301.1 |
N |
C |
C7 |
H3 |
306.4 |
61.2 |
N |
C |
C5 |
C6 |
35.9 |
34.6 |
C |
N |
C1 |
H10 |
201.4 |
201.5 |
C10 |
C5 |
C |
N |
217.1 |
214.7 |
C |
C5 |
C10 |
C6 |
178.8 |
180.0 |
C10 |
C5 |
C6 |
C4 |
179.6 |
179.2 |
C10 |
C5 |
C6 |
C11 |
359.6 |
359.5 |
C14 |
C10 |
C5 |
C6 |
0.3 |
0.3 |
C10 |
C14 |
C15 |
C11 |
359.8 |
359.9 |
C15 |
C14 |
C10 |
H5 |
180.0 |
180.1 |
C10 |
C14 |
C15 |
H6 |
179.8 |
179.8 |
C6 |
C5 |
C |
N |
35.9 |
34.6 |
C5 |
C6 |
C4 |
H8 |
235.0 |
125.8 |
C5 |
C6 |
C4 |
H9 |
115.7 |
245.2 |
C5 |
C6 |
C11 |
H7 |
180.1 |
180.4 |
C15 |
C14 |
C10 |
H4 |
180.0 |
180.1 |
C10 |
C14 |
C15 |
H5 |
180.0 |
179.9 |
C11 |
C15 |
C14 |
H6 |
180.0 |
180.0 |
C14 |
C15 |
C11 |
H7 |
180.2 |
180.0 |
C3 |
C1 |
N |
H10 |
120.8 |
120.5 |
C |
N |
C1 |
H11 |
120.2 |
117.4 |
N |
C1 |
C4 |
H8 |
91.1 |
194.9 |
N |
C1 |
C4 |
H9 |
210.5 |
75.5 |
C |
N |
C1 |
C4 |
76.1 |
79.8 |
C6 |
C4 |
C1 |
H8 |
239.7 |
120.3 |
C6 |
C4 |
C1 |
H9 |
120.3 |
239.7 |
H8 |
C4 |
C1 |
H9 |
240.6 |
119.4 |
C5 |
C6 |
C4 |
C11 |
180.0 |
180.2 |
C1 |
C4 |
C6 |
H8 |
120.3 |
239.7 |
C1 |
C4 |
C6 |
H9 |
239.7 |
120.3 |
C4 |
C6 |
C11 |
H7 |
0.1 |
0.6 |
H8 |
C4 |
C6 |
H9 |
119.4 |
240.6 |
C5 |
C6 |
C11 |
C4 |
180.0 |
179.8 |
C6 |
C11 |
C15 |
H6 |
180.1 |
179.9 |
C15 |
C11 |
C6 |
H7 |
180.0 |
180.1 |
C5 |
C6 |
C11 |
C15 |
0.1 |
0.5 |
C11 |
C15 |
C14 |
H5 |
179.8 |
179.9 |
C14 |
C15 |
C11 |
H6 |
180.0 |
180.0 |
C6 |
C11 |
C15 |
H7 |
180.0 |
179.9 |
H1 |
C7 |
C |
C5 |
309.8 |
60.7 |
H1 |
C7 |
C |
N |
66.5 |
181.1 |
C |
C7 |
H1 |
H2 |
120.0 |
120.0 |
C |
C7 |
H1 |
H3 |
240.0 |
240.1 |
H2 |
C7 |
H1 |
H3 |
120.0 |
120.1 |
H2 |
C7 |
C |
C5 |
69.8 |
180.7 |
H2 |
C7 |
C |
N |
186.5 |
301.1 |
C |
C7 |
H2 |
H1 |
240.0 |
240.0 |
C |
C7 |
H2 |
H3 |
120.0 |
120.0 |
H1 |
C7 |
H2 |
H3 |
240.0 |
240.0 |
H3 |
C7 |
C |
C5 |
189.7 |
300.7 |
H3 |
C7 |
C |
N |
306.4 |
61.2 |
C |
C7 |
H3 |
H1 |
120.0 |
119.9 |
C |
C7 |
H3 |
H2 |
240.0 |
240.0 |
H1 |
C7 |
H3 |
H2 |
120.0 |
120.0 |
H4 |
C10 |
C5 |
C6 |
180.3 |
180.3 |
H4 |
C10 |
C14 |
C15 |
180.0 |
180.1 |
H4 |
C10 |
C14 |
H5 |
360.0 |
0.0 |
C10 |
C14 |
H5 |
C15 |
180.0 |
180.1 |
H5 |
C14 |
C10 |
H4 |
360.0 |
0.0 |
H5 |
C14 |
C15 |
C11 |
179.8 |
179.9 |
H5 |
C14 |
C15 |
H6 |
359.8 |
359.9 |
C14 |
C15 |
H6 |
C11 |
180.0 |
180.0 |
H6 |
C15 |
C14 |
H5 |
359.8 |
359.9 |
H6 |
C15 |
C11 |
H7 |
0.2 |
360.0 |
H7 |
C11 |
C15 |
H6 |
0.2 |
360.0 |
C1 |
C4 |
H8 |
H9 |
119.0 |
240.6 |
C6 |
C4 |
H8 |
H9 |
241.0 |
119.3 |
C1 |
C4 |
H9 |
H8 |
241.0 |
119.4 |
C6 |
C4 |
H9 |
H8 |
119.0 |
240.6 |
H10 |
C1 |
C4 |
H8 |
325.1 |
73.1 |
H10 |
C1 |
C4 |
H9 |
84.4 |
313.7 |
C |
N |
H11 |
C1 |
239.1 |
249.1 |
H11 |
N |
C1 |
H10 |
81.3 |
84.1 |
H14 |
C13 |
C9 |
H13 |
359.7 |
0.1 |
H15 |
C12 |
C8 |
C2 |
180.1 |
179.9 |
H15 |
C12 |
C8 |
H16 |
0.1 |
0.1 |
H15 |
C12 |
C13 |
H14 |
0.1 |
0.3 |
C12 |
C8 |
H16 |
C2 |
180.0 |
179.8 |
H16 |
C8 |
C12 |
H15 |
0.1 |
0.1 |