PDB Chemical Component BM5

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for BM5

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
S1 C2 1.762 1.843
S1 C5 1.865 1.839
C2 C3 1.383 1.555
C2 H21 1.114 1.090
C2 H22 1.115 1.090
C3 N4 1.517 1.472
C3 CA 1.535 1.507
C3 H3 1.114 1.089
C5 N4 1.472 1.489
C5 C12 1.513 1.499
C5 C13 1.575 1.507
N4 C6 1.401 1.344
C6 OE 1.207 1.216
C6 C7 1.458 1.475
C7 C12 1.399 1.398
C7 C8 1.411 1.395
C12 C11 1.414 1.376
C8 C9 1.410 1.380
C8 H81 1.103 1.080
C9 C10 1.411 1.384
C9 H91 1.104 1.080
C10 C11 1.414 1.385
C10 H101 1.103 1.080
C11 H111 1.103 1.080
C13 C14 1.421 1.382
C13 C18 1.409 1.383
C14 C15 1.404 1.383
C14 H141 1.104 1.079
C15 C16 1.407 1.381
C15 H151 1.103 1.080
C16 C17 1.409 1.383
C16 H161 1.102 1.080
C17 C18 1.409 1.382
C17 H171 1.102 1.080
C18 H181 1.103 1.079
CA OB 1.209 1.208
CA OC 1.343 1.342
OC CD 1.428 1.452
CD HD1 1.116 1.090
CD HD2 1.115 1.089
CD HD3 1.115 1.090

Bond Angles for BM5

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 S1 C5 93.1 98.0
S1 C2 C3 104.4 101.0
S1 C2 H21 114.1 111.1
S1 C2 H22 114.2 111.1
S1 C5 N4 100.1 100.0
S1 C5 C12 113.3 110.9
S1 C5 C13 114.8 112.8
C3 C2 H21 114.1 111.2
C3 C2 H22 114.1 111.1
C2 C3 N4 103.0 109.4
C2 C3 CA 128.5 109.4
C2 C3 H3 104.2 109.5
H21 C2 H22 96.4 111.0
N4 C3 CA 117.4 109.5
N4 C3 H3 120.5 109.5
C3 N4 C5 103.5 109.4
C3 N4 C6 131.2 143.5
CA C3 H3 82.3 109.5
C3 CA OB 124.9 119.9
C3 CA OC 111.5 120.0
N4 C5 C12 102.0 105.8
N4 C5 C13 113.9 113.1
C5 N4 C6 111.2 107.0
C12 C5 C13 111.6 113.3
C5 C12 C7 109.0 106.2
C5 C12 C11 131.0 133.6
C5 C13 C14 119.9 120.1
C5 C13 C18 122.1 119.9
N4 C6 OE 125.8 125.0
N4 C6 C7 105.8 110.0
OE C6 C7 128.4 125.0
C6 C7 C12 109.1 108.2
C6 C7 C8 130.4 132.4
C12 C7 C8 120.5 119.4
C7 C12 C11 119.9 120.2
C7 C8 C9 119.9 119.9
C7 C8 H81 120.1 120.1
C12 C11 C10 119.8 120.1
C12 C11 H111 120.1 120.0
C9 C8 H81 120.0 120.0
C8 C9 C10 119.8 120.3
C8 C9 H91 120.1 119.9
C10 C9 H91 120.2 119.9
C9 C10 C11 120.1 120.1
C9 C10 H101 119.8 119.9
C11 C10 H101 120.0 120.0
C10 C11 H111 120.1 119.9
C14 C13 C18 118.0 120.0
C13 C14 C15 122.7 120.0
C13 C14 H141 119.3 119.9
C13 C18 C17 120.3 120.0
C13 C18 H181 119.9 120.0
C15 C14 H141 118.0 120.0
C14 C15 C16 118.0 120.0
C14 C15 H151 120.9 120.0
C16 C15 H151 121.1 120.0
C15 C16 C17 120.7 120.0
C15 C16 H161 119.5 120.0
C17 C16 H161 119.8 120.0
C16 C17 C18 120.4 120.0
C16 C17 H171 119.8 119.9
C18 C17 H171 119.8 120.0
C17 C18 H181 119.9 120.0
OB CA OC 123.6 120.0
CA OC CD 111.4 120.0
OC CD HD1 111.4 109.5
OC CD HD2 111.5 109.5
OC CD HD3 111.5 109.4
HD1 CD HD2 111.4 109.5
HD1 CD HD3 111.5 109.4
HD2 CD HD3 98.9 109.5

Torsion Angles for BM5

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 S1 C5 N4 13.7 23.2
C2 S1 C5 C12 121.6 134.5
C2 S1 C5 C13 251.4 262.8
C3 C2 S1 H21 234.7 118.0
C3 C2 S1 H22 125.2 242.1
S1 C2 C3 N4 308.9 331.0
S1 C2 C3 CA 166.9 211.0
S1 C2 C3 H3 75.5 91.0
H21 C2 S1 H22 250.5 124.1
C5 S1 C2 C3 22.3 2.4
C5 S1 C2 H21 147.5 244.4
C5 S1 C2 H22 257.0 120.3
C3 N4 C5 S1 316.9 315.2
N4 C5 S1 C12 252.2 248.7
N4 C5 S1 C13 122.4 120.5
S1 C5 N4 C6 101.9 132.1
C12 C5 S1 C13 230.2 231.7
S1 C5 C12 C7 259.1 241.4
S1 C5 C12 C11 82.2 62.2
S1 C5 C13 C14 134.3 328.9
S1 C5 C13 C18 315.2 148.7
C3 C2 S1 C5 22.3 2.4
S1 C2 C3 H21 125.3 242.0
S1 C2 C3 H22 234.7 117.9
H21 C2 C3 H22 109.5 235.9
N4 C3 C2 CA 142.0 120.0
N4 C3 C2 H3 233.4 240.0
C2 C3 N4 C5 64.8 51.5
C2 C3 N4 C6 290.0 236.6
CA C3 C2 H3 91.4 120.0
C2 C3 CA OB 305.1 119.3
C2 C3 CA OC 125.3 299.3
H21 C2 S1 C5 147.5 244.4
S1 C2 H21 C3 240.1 111.7
S1 C2 H21 H22 120.1 235.8
C3 C2 H21 H22 240.0 124.1
H21 C2 C3 N4 183.6 89.0
H21 C2 C3 CA 41.6 329.0
H21 C2 C3 H3 310.2 209.0
H22 C2 S1 C5 257.0 120.3
S1 C2 H22 C3 119.9 248.4
S1 C2 H22 H21 239.9 124.2
C3 C2 H22 H21 120.0 235.8
H22 C2 C3 N4 74.1 213.1
H22 C2 C3 CA 292.1 93.1
H22 C2 C3 H3 200.7 333.1
S1 C5 N4 C3 316.9 315.2
N4 C3 C2 H21 183.6 89.0
N4 C3 C2 H22 74.1 213.1
C2 C3 N4 CA 212.9 240.0
C2 C3 N4 H3 115.4 120.0
CA C3 N4 H3 262.5 239.9
N4 C3 CA OB 167.6 359.3
N4 C3 CA OC 347.8 179.3
C3 N4 C5 C12 200.2 200.0
C3 N4 C5 C13 79.9 75.4
C5 N4 C3 C6 134.7 174.9
C3 N4 C6 OE 331.0 339.1
C3 N4 C6 C7 150.1 159.0
CA C3 C2 H21 41.6 329.0
CA C3 C2 H22 292.1 93.1
C2 C3 CA N4 137.5 120.0
C2 C3 CA H3 258.0 240.0
N4 C3 CA H3 120.5 120.0
CA C3 N4 C5 211.9 171.5
CA C3 N4 C6 77.2 356.6
OB CA C3 OC 179.9 180.0
C3 CA OC CD 107.9 180.0
H3 C3 C2 H21 310.2 209.0
H3 C3 C2 H22 200.7 333.1
C2 C3 H3 N4 245.2 240.0
C2 C3 H3 CA 127.9 120.0
N4 C3 H3 CA 242.7 239.9
H3 C3 N4 C5 309.4 291.6
H3 C3 N4 C6 174.7 116.7
H3 C3 CA OB 47.2 239.3
H3 C3 CA OC 227.3 59.2
S1 C5 N4 C12 116.6 115.3
S1 C5 N4 C13 237.0 239.8
C5 N4 C3 CA 211.9 171.5
C5 N4 C3 H3 309.4 291.6
C3 N4 C5 C6 215.0 183.1
C12 C5 N4 C13 120.3 124.5
N4 C5 C12 C7 5.8 348.9
N4 C5 C12 C11 188.9 169.7
N4 C5 C13 C14 19.8 216.3
N4 C5 C13 C18 200.6 36.1
C5 N4 C6 OE 198.8 164.1
C5 N4 C6 C7 18.0 344.0
S1 C5 C12 N4 253.4 252.5
S1 C5 C12 C13 131.4 128.0
N4 C5 C12 C13 238.1 235.5
C12 C5 N4 C6 345.2 16.8
C12 C5 C13 C14 265.0 96.0
C12 C5 C13 C18 85.9 275.8
C6 C7 C12 C5 4.6 1.9
C5 C12 C7 C8 183.3 182.6
C7 C12 C5 C11 176.9 179.2
C5 C12 C11 C10 176.3 178.2
C5 C12 C11 H111 356.3 358.1
S1 C5 C13 N4 114.6 112.6
S1 C5 C13 C12 229.3 233.0
N4 C5 C13 C12 114.8 120.4
C13 C5 N4 C6 224.9 252.3
C13 C5 C12 C7 127.7 113.4
C13 C5 C12 C11 310.8 294.2
C14 C13 C5 C18 179.1 180.2
C5 C13 C14 C15 181.1 180.0
C5 C13 C14 H141 1.2 360.0
C5 C13 C18 C17 179.0 179.8
C5 C13 C18 H181 359.0 0.1
C6 N4 C3 CA 77.2 356.6
C6 N4 C3 H3 174.7 116.7
C3 N4 C6 C5 132.2 175.0
C6 N4 C5 C12 345.2 16.8
C6 N4 C5 C13 224.9 252.3
OE C6 N4 C7 180.8 180.1
N4 C6 C7 C12 346.3 9.1
N4 C6 C7 C8 167.8 188.4
N4 C6 OE C7 179.0 179.9
OE C6 C7 C12 165.4 189.0
OE C6 C7 C8 346.9 8.3
C5 C12 C7 C6 4.6 1.9
N4 C6 C7 OE 180.9 180.1
C12 C7 C6 C8 178.5 180.8
C6 C7 C12 C11 181.9 181.3
C6 C7 C8 C9 178.0 179.1
C6 C7 C8 H81 357.9 359.1
C7 C12 C5 C13 127.7 113.4
C5 C12 C7 C11 182.7 180.7
C6 C7 C12 C8 181.3 179.4
C12 C7 C8 C9 359.7 358.3
C12 C7 C8 H81 179.6 178.3
C7 C12 C11 C10 359.6 359.1
C7 C12 C11 H111 179.6 179.0
C6 C7 C8 C12 178.3 180.8
C8 C7 C12 C11 0.6 1.9
C9 C8 C7 H81 180.1 180.0
C7 C8 C9 C10 359.9 0.5
C7 C8 C9 H91 179.9 180.3
C11 C12 C5 C13 310.8 294.2
C5 C12 C11 C7 176.6 179.1
C11 C12 C7 C8 0.6 1.9
C9 C10 C11 C12 359.9 359.7
C12 C11 C10 H101 180.0 179.6
C10 C11 C12 H111 180.0 180.1
C7 C8 C9 H81 179.9 180.0
C10 C9 C8 H91 180.0 180.1
C8 C9 C10 C11 0.3 0.5
C8 C9 C10 H101 180.3 180.6
C7 C8 H81 C9 180.1 180.0
H81 C8 C9 C10 179.9 180.5
H81 C8 C9 H91 359.9 0.4
C12 C11 C10 C9 359.9 359.7
C10 C9 C8 H81 179.9 180.5
C8 C9 C10 H91 180.0 179.9
C11 C10 C9 H101 180.0 179.9
C9 C10 C11 H111 179.9 179.8
H91 C9 C8 H81 359.9 0.4
C8 C9 H91 C10 180.0 180.1
H91 C9 C10 C11 180.3 180.6
H91 C9 C10 H101 0.3 0.7
C12 C11 C10 H111 180.0 179.9
C11 C10 C9 H91 180.3 180.6
C9 C10 C11 H101 180.0 180.1
H101 C10 C9 H91 0.3 0.7
C9 C10 H101 C11 180.0 179.9
H101 C10 C11 H111 359.9 359.7
C12 C11 H111 C10 180.0 180.1
H111 C11 C10 H101 359.9 359.7
C5 C13 C14 C18 180.8 179.8
C14 C13 C18 C17 359.8 359.6
C14 C13 C18 H181 179.8 179.9
C15 C14 C13 H141 180.0 180.1
C13 C14 C15 C16 359.8 0.0
C13 C14 C15 H151 179.9 179.9
C5 C13 C18 C14 179.1 180.2
C18 C13 C14 C15 0.3 0.2
C18 C13 C14 H141 180.3 180.2
C16 C17 C18 C13 360.0 0.3
C13 C18 C17 H171 179.9 180.3
C17 C18 C13 H181 180.0 179.7
C15 C14 C13 C18 0.3 0.2
C13 C14 C15 H141 180.0 179.9
C16 C15 C14 H151 179.9 180.1
C14 C15 C16 C17 360.0 359.9
C14 C15 C16 H161 180.0 180.0
H141 C14 C13 C18 180.3 180.2
C13 C14 H141 C15 180.0 180.1
H141 C14 C15 C16 179.8 180.1
H141 C14 C15 H151 359.8 360.0
C16 C15 C14 H141 179.8 180.1
C14 C15 C16 H151 180.1 179.9
C17 C16 C15 H161 179.9 180.0
C15 C16 C17 C18 0.1 359.9
C15 C16 C17 H171 180.2 180.0
H151 C15 C14 H141 359.8 360.0
C14 C15 H151 C16 179.9 180.1
H151 C15 C16 C17 179.9 180.0
H151 C15 C16 H161 360.0 0.0
C13 C18 C17 C16 360.0 0.3
C17 C16 C15 H151 179.9 180.0
C15 C16 C17 H161 180.1 180.0
C18 C17 C16 H171 180.0 179.9
C16 C17 C18 H181 180.0 180.0
H161 C16 C15 H151 360.0 0.0
C15 C16 H161 C17 179.9 180.0
H161 C16 C17 C18 180.1 179.9
H161 C16 C17 H171 0.1 360.0
C13 C18 C17 H181 180.0 180.3
C18 C17 C16 H161 180.1 179.9
C16 C17 C18 H171 180.0 180.1
H171 C17 C16 H161 0.1 360.0
C16 C17 H171 C18 180.0 179.9
H171 C17 C18 H181 359.9 359.9
C13 C18 H181 C17 180.0 179.7
H181 C18 C17 H171 359.9 359.9
OB CA C3 H3 47.2 239.3
C3 CA OB OC 180.2 180.0
OB CA OC CD 288.1 360.0
OC CA C3 H3 227.3 59.2
C3 CA OC OB 179.9 180.0
CA OC CD HD1 180.1 180.0
CA OC CD HD2 305.2 300.1
CA OC CD HD3 54.7 60.1
HD1 CD OC HD2 234.9 239.9
HD1 CD OC HD3 125.3 119.9
HD2 CD OC HD3 250.5 240.0
OC CD HD1 HD2 125.2 120.0
OC CD HD1 HD3 234.7 240.1
HD2 CD HD1 HD3 109.5 120.0
OC CD HD2 HD1 234.8 240.0
OC CD HD2 HD3 117.4 120.0
HD1 CD HD2 HD3 242.6 240.0
OC CD HD3 HD1 125.3 119.9
OC CD HD3 HD2 242.6 240.0
HD1 CD HD3 HD2 117.3 120.1