PDB Chemical Component BM3

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for BM3

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	O1	1.441	1.425
C1	C2	1.449	1.531
C1	O5	1.402	1.431
C1	H1	1.115	1.095
O1	HO1	0.950	0.971
C2	N2	1.400	1.449
C2	C3	1.523	1.532
C2	H2	1.115	1.097
N2	C7	1.363	1.381
N2	HN2	1.020	1.014
C7	O7	1.231	1.224
C7	C8	1.492	1.493
C8	H81	1.115	1.102
C8	H82	1.115	1.102
C8	H83	1.114	1.102
C3	O3	1.455	1.425
C3	C4	1.612	1.529
C3	H3	1.115	1.097
O3	HO3	0.950	0.969
C4	O4	1.446	1.426
C4	C5	1.581	1.534
C4	H4	1.115	1.096
O4	HO4	0.950	0.970
C5	C6	1.562	1.526
C5	O5	1.502	1.430
C5	H5	1.115	1.098
C6	O6	1.751	1.416
C6	H61	1.115	1.090
C6	H62	1.115	1.090
O6	HO6	0.950	0.972

Bond Angles for BM3

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1	C2	124.3	109.5
O1	C1	O5	111.9	112.4
O1	C1	H1	102.0	106.8
C1	O1	HO1	124.3	106.6
C2	C1	O5	111.2	110.9
C2	C1	H1	102.0	110.2
C1	C2	N2	125.5	110.0
C1	C2	C3	100.5	110.7
C1	C2	H2	102.8	110.3
O5	C1	H1	102.0	106.9
C1	O5	C5	100.7	114.2
N2	C2	C3	119.2	111.5
N2	C2	H2	102.8	105.3
C2	N2	C7	127.3	123.0
C2	N2	HN2	116.3	118.5
C3	C2	H2	102.8	108.8
C2	C3	O3	115.5	109.8
C2	C3	C4	102.6	111.4
C2	C3	H3	110.1	109.6
C7	N2	HN2	116.3	118.5
N2	C7	O7	124.3	126.6
N2	C7	C8	118.5	113.9
O7	C7	C8	117.2	119.6
C7	C8	H81	118.5	112.4
C7	C8	H82	109.0	112.4
C7	C8	H83	109.0	115.4
H81	C8	H82	108.9	105.3
H81	C8	H83	108.9	105.3
H82	C8	H83	101.1	105.2
O3	C3	C4	108.1	110.5
O3	C3	H3	110.1	106.2
C3	O3	HO3	115.5	106.5
C4	C3	H3	110.1	109.3
C3	C4	O4	114.1	108.0
C3	C4	C5	116.6	110.2
C3	C4	H4	104.0	110.0
O4	C4	C5	112.4	110.3
O4	C4	H4	104.0	107.3
C4	O4	HO4	114.1	106.5
C5	C4	H4	104.0	110.9
C4	C5	C6	106.8	112.0
C4	C5	O5	106.6	111.1
C4	C5	H5	111.4	110.4
C6	C5	O5	109.2	107.0
C6	C5	H5	111.4	107.0
C5	C6	O6	104.0	108.5
C5	C6	H61	114.3	109.9
C5	C6	H62	114.2	110.0
O5	C5	H5	111.4	109.3
O6	C6	H61	114.3	109.3
O6	C6	H62	114.3	109.3
C6	O6	HO6	104.0	107.1
H61	C6	H62	96.2	109.7

Torsion Angles for BM3

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O1	O5	138.1	123.7
C2	C1	O1	H1	246.3	240.7
O1	C1	C2	N2	172.3	165.4
O1	C1	C2	C3	310.2	289.0
O1	C1	C2	H2	56.1	49.6
O5	C1	O1	H1	108.3	116.9
O1	C1	O5	C5	58.7	64.0
O1	C1	C2	O5	221.7	235.5
O1	C1	C2	H1	113.7	117.2
C2	C1	O1	HO1	180.0	215.0
O5	C1	C2	H1	252.0	241.8
C2	C1	O5	C5	275.0	301.1
N2	C2	C1	C3	222.1	236.3
N2	C2	C1	H2	116.3	115.8
C1	C2	N2	C7	246.2	271.1
C1	C2	N2	HN2	66.2	91.1
C3	C2	C1	H2	254.1	239.5
C1	C2	C3	O3	183.3	186.0
C1	C2	C3	C4	300.6	308.7
C1	C2	C3	H3	57.8	69.8
O1	C1	O5	C2	143.7	122.9
O1	C1	O5	H1	251.7	243.1
O5	C1	O1	HO1	42.0	91.3
C2	C1	O5	H1	108.0	120.2
O5	C1	C2	N2	310.7	289.9
O5	C1	C2	C3	88.5	53.6
O5	C1	C2	H2	194.4	174.1
C4	C5	O5	C1	56.8	59.4
C6	C5	O5	C1	171.7	182.0
C1	O5	C5	H5	295.1	297.5
O1	C1	H1	C2	230.7	241.1
O1	C1	H1	O5	115.7	120.5
H1	C1	O1	HO1	293.7	334.4
C2	C1	H1	O5	245.0	239.3
H1	C1	C2	N2	58.7	48.2
H1	C1	C2	C3	196.6	171.8
H1	C1	C2	H2	302.4	292.4
H1	C1	O5	C5	166.9	180.9
HO1	O1	C1	C2	180.0	215.0
HO1	O1	C1	O5	42.0	91.3
HO1	O1	C1	H1	293.7	334.4
N2	C2	C1	O5	310.7	289.9
N2	C2	C1	H1	58.7	48.2
C1	C2	N2	C3	130.9	123.2
C1	C2	N2	H2	243.7	241.1
C3	C2	N2	H2	112.8	117.9
N2	C2	C3	O3	324.5	308.8
N2	C2	C3	C4	81.9	71.5
N2	C2	C3	H3	199.1	192.6
C7	N2	C2	HN2	180.0	180.0
C2	N2	C7	O7	270.6	360.0
C2	N2	C7	C8	93.3	179.9
C3	C2	C1	O5	88.5	53.6
C3	C2	C1	H1	196.6	171.8
C1	C2	C3	N2	218.7	237.2
C1	C2	C3	H2	105.9	121.4
N2	C2	C3	H2	247.2	244.2
C3	C2	N2	C7	115.3	147.8
C3	C2	N2	HN2	295.2	327.8
O3	C3	C2	C4	242.6	237.3
O3	C3	C2	H3	125.5	116.2
C2	C3	O3	HO3	180.0	133.5
C4	C3	C2	H3	242.8	238.9
C2	C3	C4	O4	183.1	172.0
C2	C3	C4	C5	49.4	51.5
C2	C3	C4	H4	295.7	288.9
H2	C2	C1	O5	194.4	174.1
H2	C2	C1	H1	302.4	292.4
C1	C2	H2	N2	131.5	118.7
C1	C2	H2	C3	255.9	238.3
N2	C2	H2	C3	124.4	119.6
H2	C2	N2	C7	2.4	30.0
H2	C2	N2	HN2	182.4	210.0
H2	C2	C3	O3	77.4	64.6
H2	C2	C3	C4	194.7	187.3
H2	C2	C3	H3	311.9	308.3
C7	N2	C2	C3	115.3	147.8
C7	N2	C2	H2	2.4	30.0
C2	N2	C7	HN2	180.0	180.0
O7	C7	N2	C8	177.3	180.0
N2	C7	C8	H81	180.0	120.8
N2	C7	C8	H82	54.7	239.5
N2	C7	C8	H83	305.3	0.1
HN2	N2	C2	C3	295.2	327.8
HN2	N2	C2	H2	182.4	210.0
C2	N2	HN2	C7	180.0	180.0
HN2	N2	C7	O7	90.6	180.0
HN2	N2	C7	C8	273.3	359.9
O7	C7	N2	HN2	90.6	180.0
N2	C7	O7	C8	182.6	180.0
O7	C7	C8	H81	2.5	300.8
O7	C7	C8	H82	237.2	59.4
O7	C7	C8	H83	127.7	180.1
C8	C7	N2	HN2	273.3	359.9
N2	C7	C8	O7	177.5	180.0
H81	C8	C7	H82	125.3	241.3
H81	C8	C7	H83	234.8	120.7
H82	C8	C7	H83	109.5	239.4
C7	C8	H81	H82	234.7	122.7
C7	C8	H81	H83	125.2	233.6
H82	C8	H81	H83	250.5	110.9
C7	C8	H82	H81	130.7	237.2
C7	C8	H82	H83	245.3	126.3
H81	C8	H82	H83	114.7	249.1
C7	C8	H83	H81	229.4	124.5
C7	C8	H83	H82	114.7	235.5
H81	C8	H83	H82	245.3	111.0
O3	C3	C2	H2	77.4	64.6
C2	C3	O3	C4	114.2	123.2
C2	C3	O3	H3	234.6	241.6
C4	C3	O3	H3	120.3	118.4
O3	C3	C4	O4	305.5	294.2
O3	C3	C4	C5	171.9	173.7
O3	C3	C4	H4	58.1	51.1
C4	C3	C2	H2	194.7	187.3
C2	C3	C4	O3	237.5	237.7
C2	C3	C4	H3	117.2	121.3
O3	C3	C4	H3	239.6	243.5
C4	C3	O3	HO3	65.8	10.3
O4	C4	C3	C5	133.7	120.5
O4	C4	C3	H4	247.4	243.1
C3	C4	O4	HO4	180.0	226.3
C5	C4	C3	H4	113.7	122.6
C3	C4	C5	C6	195.3	186.1
C3	C4	C5	O5	311.9	305.6
C3	C4	C5	H5	73.5	67.0
H3	C3	C2	H2	311.9	308.3
C2	C3	H3	O3	128.4	118.5
C2	C3	H3	C4	247.6	237.7
O3	C3	H3	C4	119.1	119.2
H3	C3	O3	HO3	305.4	251.9
H3	C3	C4	O4	65.9	50.7
H3	C3	C4	C5	292.2	290.2
H3	C3	C4	H4	178.5	167.6
HO3	O3	C3	C4	65.8	10.3
HO3	O3	C3	H3	305.4	251.9
O4	C4	C3	H3	65.9	50.7
C3	C4	O4	C5	224.4	239.5
C3	C4	O4	H4	112.6	118.6
C5	C4	O4	H4	248.2	239.0
O4	C4	C5	C6	60.9	66.9
O4	C4	C5	O5	177.4	186.4
O4	C4	C5	H5	299.1	307.8
C1	O5	C5	C4	56.8	59.4
C5	C4	C3	H3	292.2	290.2
C3	C4	C5	O4	134.5	119.2
C3	C4	C5	H4	246.3	238.0
O4	C4	C5	H4	111.8	118.8
C5	C4	O4	HO4	315.6	346.8
C6	C5	C4	O5	243.4	240.4
C6	C5	C4	H5	121.8	119.1
C4	C5	C6	O6	247.5	179.5
C4	C5	C6	H61	122.3	60.0
C4	C5	C6	H62	12.8	299.1
O5	C5	C4	H5	238.3	238.6
H4	C4	C3	H3	178.5	167.6
C3	C4	H4	O4	240.3	242.7
C3	C4	H4	C5	122.5	122.2
O4	C4	H4	C5	242.2	239.5
H4	C4	O4	HO4	67.4	107.7
H4	C4	C5	C6	309.1	308.1
H4	C4	C5	O5	65.6	67.7
H4	C4	C5	H5	187.3	189.0
HO4	O4	C4	C5	315.6	346.8
HO4	O4	C4	H4	67.4	107.7
C1	O5	C5	C6	171.7	182.0
C6	C5	C4	H4	309.1	308.1
C4	C5	C6	O5	114.8	121.9
C4	C5	C6	H5	238.2	239.0
O5	C5	C6	H5	123.4	117.0
O6	C6	C5	H61	125.3	119.5
O6	C6	C5	H62	234.7	240.5
C5	C6	O6	HO6	180.0	281.0
H61	C6	C5	H62	109.4	120.9
C5	O5	C1	H1	166.9	180.9
O5	C5	C4	H4	65.6	67.7
C4	C5	O5	C6	245.1	237.5
C4	C5	O5	H5	121.7	122.0
C6	C5	O5	H5	236.6	244.5
O5	C5	C6	O6	132.7	57.6
O5	C5	C6	H61	7.4	298.1
O5	C5	C6	H62	258.0	177.2
H5	C5	C4	H4	187.3	189.0
C4	C5	H5	C6	119.1	122.1
C4	C5	H5	O5	241.2	237.6
C6	C5	H5	O5	122.1	115.5
H5	C5	C6	O6	9.3	300.6
H5	C5	C6	H61	244.0	181.0
H5	C5	C6	H62	134.6	60.1
O6	C6	C5	O5	132.7	57.6
O6	C6	C5	H5	9.3	300.6
C5	C6	O6	H61	234.7	240.1
C5	C6	O6	H62	125.3	120.0
H61	C6	O6	H62	250.5	239.9
H61	C6	C5	O5	7.4	298.1
H61	C6	C5	H5	244.0	181.0
C5	C6	H61	O6	119.7	119.0
C5	C6	H61	H62	239.9	238.9
O6	C6	H61	H62	120.2	119.9
H61	C6	O6	HO6	305.3	40.9
H62	C6	C5	O5	258.0	177.2
H62	C6	C5	H5	134.6	60.1
C5	C6	H62	O6	240.3	240.9
C5	C6	H62	H61	120.1	121.0
O6	C6	H62	H61	239.8	240.1
H62	C6	O6	HO6	54.7	161.1
HO6	O6	C6	H61	305.3	40.9
HO6	O6	C6	H62	54.7	161.1