PDB Chemical Component BM1
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for BM1
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
S1 |
C2 |
1.774 |
1.844 |
S1 |
C5 |
1.842 |
1.840 |
C2 |
C3 |
1.390 |
1.553 |
C2 |
H21 |
1.115 |
1.090 |
C2 |
H22 |
1.114 |
1.089 |
C3 |
N4 |
1.473 |
1.470 |
C3 |
H31 |
1.114 |
1.089 |
C3 |
H32 |
1.115 |
1.090 |
C5 |
N4 |
1.456 |
1.493 |
C5 |
C12 |
1.497 |
1.502 |
C5 |
C13 |
1.549 |
1.505 |
N4 |
C6 |
1.403 |
1.346 |
C6 |
OE |
1.213 |
1.216 |
C6 |
C7 |
1.452 |
1.476 |
C7 |
C12 |
1.390 |
1.414 |
C7 |
C8 |
1.395 |
1.394 |
C12 |
C11 |
1.410 |
1.364 |
C8 |
C9 |
1.402 |
1.380 |
C8 |
H81 |
1.103 |
1.081 |
C9 |
C10 |
1.405 |
1.383 |
C9 |
H91 |
1.103 |
1.080 |
C10 |
C11 |
1.392 |
1.385 |
C10 |
H101 |
1.103 |
1.080 |
C11 |
H111 |
1.103 |
1.080 |
C13 |
C14 |
1.401 |
1.382 |
C13 |
C18 |
1.407 |
1.382 |
C14 |
C15 |
1.399 |
1.382 |
C14 |
H141 |
1.103 |
1.079 |
C15 |
CA |
1.492 |
1.507 |
C15 |
C16 |
1.408 |
1.382 |
CA |
HA1 |
1.115 |
1.090 |
CA |
HA2 |
1.114 |
1.090 |
CA |
HA3 |
1.115 |
1.091 |
C16 |
C17 |
1.403 |
1.382 |
C16 |
H161 |
1.103 |
1.080 |
C17 |
C18 |
1.403 |
1.383 |
C17 |
H171 |
1.103 |
1.079 |
C18 |
H181 |
1.103 |
1.080 |
Bond Angles for BM1
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
S1 |
C5 |
93.1 |
98.1 |
S1 |
C2 |
C3 |
109.9 |
100.9 |
S1 |
C2 |
H21 |
112.0 |
111.2 |
S1 |
C2 |
H22 |
112.0 |
111.1 |
S1 |
C5 |
N4 |
102.2 |
100.1 |
S1 |
C5 |
C12 |
112.9 |
110.3 |
S1 |
C5 |
C13 |
111.7 |
113.1 |
C3 |
C2 |
H21 |
112.0 |
111.1 |
C3 |
C2 |
H22 |
112.0 |
111.2 |
C2 |
C3 |
N4 |
106.2 |
109.9 |
C2 |
C3 |
H31 |
113.4 |
109.4 |
C2 |
C3 |
H32 |
113.5 |
109.4 |
H21 |
C2 |
H22 |
98.4 |
111.0 |
N4 |
C3 |
H31 |
113.4 |
109.4 |
N4 |
C3 |
H32 |
113.4 |
109.4 |
C3 |
N4 |
C5 |
112.9 |
109.4 |
C3 |
N4 |
C6 |
121.8 |
144.2 |
H31 |
C3 |
H32 |
97.1 |
109.3 |
N4 |
C5 |
C12 |
102.9 |
106.0 |
N4 |
C5 |
C13 |
116.3 |
113.4 |
C5 |
N4 |
C6 |
111.8 |
106.4 |
C12 |
C5 |
C13 |
110.5 |
113.0 |
C5 |
C12 |
C7 |
109.1 |
105.4 |
C5 |
C12 |
C11 |
130.5 |
134.7 |
C5 |
C13 |
C14 |
120.2 |
120.1 |
C5 |
C13 |
C18 |
120.9 |
120.0 |
N4 |
C6 |
OE |
126.4 |
125.1 |
N4 |
C6 |
C7 |
105.8 |
109.7 |
OE |
C6 |
C7 |
127.9 |
125.2 |
C6 |
C7 |
C12 |
109.4 |
108.2 |
C6 |
C7 |
C8 |
130.1 |
132.6 |
C12 |
C7 |
C8 |
120.5 |
119.2 |
C7 |
C12 |
C11 |
120.2 |
119.9 |
C7 |
C8 |
C9 |
119.5 |
120.0 |
C7 |
C8 |
H81 |
120.0 |
120.1 |
C12 |
C11 |
C10 |
119.6 |
120.5 |
C12 |
C11 |
H111 |
120.8 |
119.5 |
C9 |
C8 |
H81 |
120.5 |
120.0 |
C8 |
C9 |
C10 |
120.2 |
120.2 |
C8 |
C9 |
H91 |
119.7 |
119.9 |
C10 |
C9 |
H91 |
120.0 |
119.9 |
C9 |
C10 |
C11 |
120.0 |
120.2 |
C9 |
C10 |
H101 |
120.4 |
119.9 |
C11 |
C10 |
H101 |
119.6 |
119.8 |
C10 |
C11 |
H111 |
119.6 |
120.0 |
C14 |
C13 |
C18 |
118.9 |
120.0 |
C13 |
C14 |
C15 |
121.4 |
120.0 |
C13 |
C14 |
H141 |
119.4 |
120.0 |
C13 |
C18 |
C17 |
120.4 |
120.0 |
C13 |
C18 |
H181 |
119.9 |
120.0 |
C15 |
C14 |
H141 |
119.2 |
120.0 |
C14 |
C15 |
CA |
120.1 |
120.0 |
C14 |
C15 |
C16 |
119.1 |
120.0 |
CA |
C15 |
C16 |
120.8 |
120.0 |
C15 |
CA |
HA1 |
120.1 |
109.5 |
C15 |
CA |
HA2 |
108.4 |
109.5 |
C15 |
CA |
HA3 |
108.4 |
109.5 |
C15 |
C16 |
C17 |
120.2 |
120.0 |
C15 |
C16 |
H161 |
120.1 |
120.0 |
HA1 |
CA |
HA2 |
108.4 |
109.5 |
HA1 |
CA |
HA3 |
108.4 |
109.4 |
HA2 |
CA |
HA3 |
101.5 |
109.4 |
C17 |
C16 |
H161 |
119.7 |
120.0 |
C16 |
C17 |
C18 |
119.9 |
120.0 |
C16 |
C17 |
H171 |
120.0 |
120.0 |
C18 |
C17 |
H171 |
120.0 |
120.0 |
C17 |
C18 |
H181 |
119.7 |
120.0 |
Torsion Angles for BM1
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
S1 |
C5 |
N4 |
9.6 |
22.8 |
C2 |
S1 |
C5 |
C12 |
119.4 |
134.1 |
C2 |
S1 |
C5 |
C13 |
244.6 |
261.8 |
C3 |
C2 |
S1 |
H21 |
234.7 |
242.1 |
C3 |
C2 |
S1 |
H22 |
125.2 |
118.0 |
S1 |
C2 |
C3 |
N4 |
326.2 |
331.3 |
S1 |
C2 |
C3 |
H31 |
91.5 |
91.4 |
S1 |
C2 |
C3 |
H32 |
201.0 |
211.1 |
H21 |
C2 |
S1 |
H22 |
250.5 |
235.9 |
C5 |
S1 |
C2 |
C3 |
14.5 |
2.4 |
C5 |
S1 |
C2 |
H21 |
139.7 |
120.3 |
C5 |
S1 |
C2 |
H22 |
249.2 |
244.5 |
C3 |
N4 |
C5 |
S1 |
328.5 |
316.0 |
N4 |
C5 |
S1 |
C12 |
250.2 |
248.7 |
N4 |
C5 |
S1 |
C13 |
125.0 |
121.0 |
S1 |
C5 |
N4 |
C6 |
110.2 |
135.2 |
C12 |
C5 |
S1 |
C13 |
234.8 |
232.3 |
S1 |
C5 |
C12 |
C7 |
251.1 |
240.3 |
S1 |
C5 |
C12 |
C11 |
76.7 |
59.2 |
S1 |
C5 |
C13 |
C14 |
132.1 |
329.1 |
S1 |
C5 |
C13 |
C18 |
310.4 |
149.0 |
C3 |
C2 |
S1 |
C5 |
14.5 |
2.4 |
S1 |
C2 |
C3 |
H21 |
125.2 |
117.9 |
S1 |
C2 |
C3 |
H22 |
234.8 |
242.1 |
H21 |
C2 |
C3 |
H22 |
109.5 |
124.1 |
N4 |
C3 |
C2 |
H31 |
234.8 |
239.8 |
N4 |
C3 |
C2 |
H32 |
125.2 |
120.1 |
C2 |
C3 |
N4 |
C5 |
44.2 |
50.9 |
C2 |
C3 |
N4 |
C6 |
266.9 |
232.2 |
H31 |
C3 |
C2 |
H32 |
250.5 |
240.3 |
H21 |
C2 |
S1 |
C5 |
139.7 |
120.3 |
S1 |
C2 |
H21 |
C3 |
235.9 |
248.5 |
S1 |
C2 |
H21 |
H22 |
118.0 |
124.2 |
C3 |
C2 |
H21 |
H22 |
242.0 |
235.8 |
H21 |
C2 |
C3 |
N4 |
201.0 |
213.3 |
H21 |
C2 |
C3 |
H31 |
326.2 |
333.5 |
H21 |
C2 |
C3 |
H32 |
75.8 |
93.2 |
H22 |
C2 |
S1 |
C5 |
249.2 |
244.5 |
S1 |
C2 |
H22 |
C3 |
124.1 |
111.6 |
S1 |
C2 |
H22 |
H21 |
242.0 |
235.8 |
C3 |
C2 |
H22 |
H21 |
118.0 |
124.2 |
H22 |
C2 |
C3 |
N4 |
91.5 |
89.2 |
H22 |
C2 |
C3 |
H31 |
216.7 |
209.3 |
H22 |
C2 |
C3 |
H32 |
326.3 |
329.1 |
S1 |
C5 |
N4 |
C3 |
328.5 |
316.0 |
N4 |
C3 |
C2 |
H21 |
201.0 |
213.3 |
N4 |
C3 |
C2 |
H22 |
91.5 |
89.2 |
C2 |
C3 |
N4 |
H31 |
125.2 |
120.2 |
C2 |
C3 |
N4 |
H32 |
234.7 |
239.9 |
H31 |
C3 |
N4 |
H32 |
109.5 |
119.7 |
C3 |
N4 |
C5 |
C12 |
211.3 |
201.4 |
C3 |
N4 |
C5 |
C13 |
90.4 |
76.8 |
C5 |
N4 |
C3 |
C6 |
137.3 |
178.6 |
C3 |
N4 |
C6 |
OE |
327.9 |
338.0 |
C3 |
N4 |
C6 |
C7 |
148.4 |
157.9 |
H31 |
C3 |
C2 |
H21 |
326.2 |
333.5 |
H31 |
C3 |
C2 |
H22 |
216.7 |
209.3 |
C2 |
C3 |
H31 |
N4 |
238.7 |
239.5 |
C2 |
C3 |
H31 |
H32 |
119.4 |
119.8 |
N4 |
C3 |
H31 |
H32 |
240.7 |
240.3 |
H31 |
C3 |
N4 |
C5 |
279.0 |
290.7 |
H31 |
C3 |
N4 |
C6 |
141.7 |
112.1 |
H32 |
C3 |
C2 |
H21 |
75.8 |
93.2 |
H32 |
C3 |
C2 |
H22 |
326.3 |
329.1 |
C2 |
C3 |
H32 |
N4 |
121.3 |
120.4 |
C2 |
C3 |
H32 |
H31 |
240.6 |
240.2 |
N4 |
C3 |
H32 |
H31 |
119.4 |
119.8 |
H32 |
C3 |
N4 |
C5 |
169.5 |
171.0 |
H32 |
C3 |
N4 |
C6 |
32.2 |
352.4 |
S1 |
C5 |
N4 |
C12 |
117.2 |
114.7 |
S1 |
C5 |
N4 |
C13 |
238.1 |
239.2 |
C5 |
N4 |
C3 |
H31 |
279.0 |
290.7 |
C5 |
N4 |
C3 |
H32 |
169.5 |
171.0 |
C3 |
N4 |
C5 |
C6 |
218.3 |
180.8 |
C12 |
C5 |
N4 |
C13 |
120.9 |
124.6 |
N4 |
C5 |
C12 |
C7 |
0.5 |
347.8 |
N4 |
C5 |
C12 |
C11 |
186.1 |
166.7 |
N4 |
C5 |
C13 |
C14 |
15.4 |
216.0 |
N4 |
C5 |
C13 |
C18 |
193.7 |
35.9 |
C5 |
N4 |
C6 |
OE |
190.2 |
159.3 |
C5 |
N4 |
C6 |
C7 |
10.7 |
339.3 |
S1 |
C5 |
C12 |
N4 |
250.6 |
252.5 |
S1 |
C5 |
C12 |
C13 |
125.8 |
127.7 |
N4 |
C5 |
C12 |
C13 |
235.2 |
235.2 |
C12 |
C5 |
N4 |
C6 |
352.9 |
20.5 |
C12 |
C5 |
C13 |
C14 |
258.7 |
95.4 |
C12 |
C5 |
C13 |
C18 |
77.0 |
275.3 |
C6 |
C7 |
C12 |
C5 |
5.9 |
0.3 |
C5 |
C12 |
C7 |
C8 |
185.2 |
181.6 |
C7 |
C12 |
C5 |
C11 |
174.4 |
181.1 |
C5 |
C12 |
C11 |
C10 |
173.4 |
179.5 |
C5 |
C12 |
C11 |
H111 |
353.5 |
360.0 |
S1 |
C5 |
C13 |
N4 |
116.7 |
113.1 |
S1 |
C5 |
C13 |
C12 |
233.5 |
233.8 |
N4 |
C5 |
C13 |
C12 |
116.7 |
120.6 |
C13 |
C5 |
N4 |
C6 |
232.0 |
256.0 |
C13 |
C5 |
C12 |
C7 |
125.2 |
112.6 |
C13 |
C5 |
C12 |
C11 |
310.9 |
291.5 |
C14 |
C13 |
C5 |
C18 |
181.7 |
180.1 |
C5 |
C13 |
C14 |
C15 |
178.3 |
180.4 |
C5 |
C13 |
C14 |
H141 |
358.4 |
359.8 |
C5 |
C13 |
C18 |
C17 |
181.9 |
179.9 |
C5 |
C13 |
C18 |
H181 |
1.8 |
0.0 |
C6 |
N4 |
C3 |
H31 |
141.7 |
112.1 |
C6 |
N4 |
C3 |
H32 |
32.2 |
352.4 |
C3 |
N4 |
C6 |
C5 |
137.7 |
178.6 |
C6 |
N4 |
C5 |
C12 |
352.9 |
20.5 |
C6 |
N4 |
C5 |
C13 |
232.0 |
256.0 |
OE |
C6 |
N4 |
C7 |
179.5 |
180.1 |
N4 |
C6 |
C7 |
C12 |
349.9 |
13.3 |
N4 |
C6 |
C7 |
C8 |
170.7 |
191.7 |
N4 |
C6 |
OE |
C7 |
180.6 |
179.9 |
OE |
C6 |
C7 |
C12 |
170.4 |
193.2 |
OE |
C6 |
C7 |
C8 |
351.2 |
11.6 |
C5 |
C12 |
C7 |
C6 |
5.9 |
0.3 |
N4 |
C6 |
C7 |
OE |
179.5 |
180.1 |
C12 |
C7 |
C6 |
C8 |
179.2 |
181.6 |
C6 |
C7 |
C12 |
C11 |
181.0 |
181.2 |
C6 |
C7 |
C8 |
C9 |
179.1 |
179.9 |
C6 |
C7 |
C8 |
H81 |
359.0 |
359.8 |
C7 |
C12 |
C5 |
C13 |
125.2 |
112.6 |
C5 |
C12 |
C7 |
C11 |
184.9 |
179.1 |
C6 |
C7 |
C12 |
C8 |
180.7 |
178.6 |
C12 |
C7 |
C8 |
C9 |
360.0 |
358.1 |
C12 |
C7 |
C8 |
H81 |
179.9 |
178.0 |
C7 |
C12 |
C11 |
C10 |
359.6 |
358.2 |
C7 |
C12 |
C11 |
H111 |
179.6 |
178.7 |
C6 |
C7 |
C8 |
C12 |
179.1 |
181.8 |
C8 |
C7 |
C12 |
C11 |
0.3 |
2.6 |
C9 |
C8 |
C7 |
H81 |
180.0 |
180.1 |
C7 |
C8 |
C9 |
C10 |
359.9 |
0.4 |
C7 |
C8 |
C9 |
H91 |
179.9 |
180.4 |
C11 |
C12 |
C5 |
C13 |
310.9 |
291.5 |
C5 |
C12 |
C11 |
C7 |
173.9 |
181.2 |
C11 |
C12 |
C7 |
C8 |
0.3 |
2.6 |
C9 |
C10 |
C11 |
C12 |
0.3 |
0.3 |
C12 |
C11 |
C10 |
H101 |
180.4 |
180.2 |
C10 |
C11 |
C12 |
H111 |
180.0 |
179.5 |
C7 |
C8 |
C9 |
H81 |
180.0 |
179.9 |
C10 |
C9 |
C8 |
H91 |
180.0 |
180.0 |
C8 |
C9 |
C10 |
C11 |
359.9 |
0.4 |
C8 |
C9 |
C10 |
H101 |
179.9 |
180.5 |
C7 |
C8 |
H81 |
C9 |
180.0 |
180.1 |
H81 |
C8 |
C9 |
C10 |
180.0 |
180.5 |
H81 |
C8 |
C9 |
H91 |
359.9 |
0.5 |
C12 |
C11 |
C10 |
C9 |
0.3 |
0.3 |
C10 |
C9 |
C8 |
H81 |
180.0 |
180.5 |
C8 |
C9 |
C10 |
H91 |
180.0 |
180.0 |
C11 |
C10 |
C9 |
H101 |
180.0 |
179.9 |
C9 |
C10 |
C11 |
H111 |
180.3 |
179.8 |
H91 |
C9 |
C8 |
H81 |
359.9 |
0.5 |
C8 |
C9 |
H91 |
C10 |
180.0 |
180.0 |
H91 |
C9 |
C10 |
C11 |
179.9 |
180.4 |
H91 |
C9 |
C10 |
H101 |
359.9 |
0.5 |
C12 |
C11 |
C10 |
H111 |
180.0 |
180.5 |
C11 |
C10 |
C9 |
H91 |
179.9 |
180.4 |
C9 |
C10 |
C11 |
H101 |
180.0 |
180.1 |
H101 |
C10 |
C9 |
H91 |
359.9 |
0.5 |
C9 |
C10 |
H101 |
C11 |
180.0 |
179.9 |
H101 |
C10 |
C11 |
H111 |
0.4 |
359.7 |
C12 |
C11 |
H111 |
C10 |
180.0 |
179.5 |
H111 |
C11 |
C10 |
H101 |
0.4 |
359.7 |
C5 |
C13 |
C14 |
C18 |
178.3 |
179.9 |
C14 |
C13 |
C18 |
C17 |
0.2 |
359.8 |
C14 |
C13 |
C18 |
H181 |
180.1 |
179.9 |
C15 |
C14 |
C13 |
H141 |
179.9 |
180.5 |
C13 |
C14 |
C15 |
CA |
179.8 |
179.8 |
C13 |
C14 |
C15 |
C16 |
359.9 |
359.5 |
C5 |
C13 |
C18 |
C14 |
181.7 |
180.1 |
C18 |
C13 |
C14 |
C15 |
360.0 |
0.5 |
C18 |
C13 |
C14 |
H141 |
180.0 |
179.9 |
C16 |
C17 |
C18 |
C13 |
359.7 |
360.0 |
C13 |
C18 |
C17 |
H171 |
179.7 |
179.9 |
C17 |
C18 |
C13 |
H181 |
180.1 |
179.9 |
C15 |
C14 |
C13 |
C18 |
360.0 |
0.5 |
C13 |
C14 |
C15 |
H141 |
180.1 |
179.5 |
CA |
C15 |
C14 |
C16 |
179.9 |
180.3 |
C14 |
C15 |
CA |
HA1 |
180.0 |
269.7 |
C14 |
C15 |
CA |
HA2 |
305.3 |
29.7 |
C14 |
C15 |
CA |
HA3 |
54.7 |
149.7 |
C14 |
C15 |
C16 |
C17 |
0.0 |
0.3 |
C14 |
C15 |
C16 |
H161 |
180.1 |
180.3 |
H141 |
C14 |
C13 |
C18 |
180.0 |
179.9 |
C13 |
C14 |
H141 |
C15 |
179.9 |
180.5 |
H141 |
C14 |
C15 |
CA |
359.7 |
0.3 |
H141 |
C14 |
C15 |
C16 |
179.8 |
180.0 |
CA |
C15 |
C14 |
H141 |
359.7 |
0.3 |
C14 |
C15 |
CA |
C16 |
180.1 |
179.7 |
CA |
C15 |
C16 |
C17 |
180.2 |
180.0 |
CA |
C15 |
C16 |
H161 |
0.2 |
360.0 |
HA1 |
CA |
C15 |
HA2 |
234.6 |
239.9 |
HA1 |
CA |
C15 |
HA3 |
125.2 |
120.0 |
HA2 |
CA |
C15 |
HA3 |
250.6 |
240.0 |
C16 |
C15 |
C14 |
H141 |
179.8 |
180.0 |
C14 |
C15 |
C16 |
CA |
179.9 |
180.3 |
C16 |
C15 |
CA |
HA1 |
359.8 |
90.0 |
C16 |
C15 |
CA |
HA2 |
125.2 |
210.0 |
C16 |
C15 |
CA |
HA3 |
234.6 |
330.0 |
C17 |
C16 |
C15 |
H161 |
180.0 |
180.0 |
C15 |
C16 |
C17 |
C18 |
0.1 |
360.0 |
C15 |
C16 |
C17 |
H171 |
180.2 |
180.0 |
HA1 |
CA |
C15 |
C16 |
359.8 |
90.0 |
C15 |
CA |
HA1 |
HA2 |
125.4 |
120.0 |
C15 |
CA |
HA1 |
HA3 |
234.8 |
240.0 |
HA2 |
CA |
HA1 |
HA3 |
109.4 |
119.9 |
HA2 |
CA |
C15 |
C16 |
125.2 |
210.0 |
C15 |
CA |
HA2 |
HA1 |
228.1 |
239.9 |
C15 |
CA |
HA2 |
HA3 |
114.1 |
120.0 |
HA1 |
CA |
HA2 |
HA3 |
246.0 |
240.1 |
HA3 |
CA |
C15 |
C16 |
234.6 |
330.0 |
C15 |
CA |
HA3 |
HA1 |
131.8 |
120.0 |
C15 |
CA |
HA3 |
HA2 |
245.9 |
240.0 |
HA1 |
CA |
HA3 |
HA2 |
114.1 |
120.0 |
C13 |
C18 |
C17 |
C16 |
359.7 |
360.0 |
C15 |
C16 |
C17 |
H161 |
180.0 |
180.0 |
C18 |
C17 |
C16 |
H171 |
179.9 |
180.0 |
C16 |
C17 |
C18 |
H181 |
179.8 |
179.9 |
C15 |
C16 |
H161 |
C17 |
180.0 |
180.0 |
H161 |
C16 |
C17 |
C18 |
180.1 |
180.0 |
H161 |
C16 |
C17 |
H171 |
0.2 |
0.0 |
C13 |
C18 |
C17 |
H181 |
179.9 |
180.1 |
C18 |
C17 |
C16 |
H161 |
180.1 |
180.0 |
C16 |
C17 |
C18 |
H171 |
180.1 |
180.0 |
H171 |
C17 |
C16 |
H161 |
0.2 |
0.0 |
C16 |
C17 |
H171 |
C18 |
179.9 |
180.0 |
H171 |
C17 |
C18 |
H181 |
359.7 |
359.9 |
C13 |
C18 |
H181 |
C17 |
180.1 |
179.9 |
H181 |
C18 |
C17 |
H171 |
359.7 |
359.9 |