PDB Chemical Component BM1

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for BM1

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
S1 C2 1.774 1.844
S1 C5 1.842 1.840
C2 C3 1.390 1.553
C2 H21 1.115 1.090
C2 H22 1.114 1.089
C3 N4 1.473 1.470
C3 H31 1.114 1.089
C3 H32 1.115 1.090
C5 N4 1.456 1.493
C5 C12 1.497 1.502
C5 C13 1.549 1.505
N4 C6 1.403 1.346
C6 OE 1.213 1.216
C6 C7 1.452 1.476
C7 C12 1.390 1.414
C7 C8 1.395 1.394
C12 C11 1.410 1.364
C8 C9 1.402 1.380
C8 H81 1.103 1.081
C9 C10 1.405 1.383
C9 H91 1.103 1.080
C10 C11 1.392 1.385
C10 H101 1.103 1.080
C11 H111 1.103 1.080
C13 C14 1.401 1.382
C13 C18 1.407 1.382
C14 C15 1.399 1.382
C14 H141 1.103 1.079
C15 CA 1.492 1.507
C15 C16 1.408 1.382
CA HA1 1.115 1.090
CA HA2 1.114 1.090
CA HA3 1.115 1.091
C16 C17 1.403 1.382
C16 H161 1.103 1.080
C17 C18 1.403 1.383
C17 H171 1.103 1.079
C18 H181 1.103 1.080

Bond Angles for BM1

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 S1 C5 93.1 98.1
S1 C2 C3 109.9 100.9
S1 C2 H21 112.0 111.2
S1 C2 H22 112.0 111.1
S1 C5 N4 102.2 100.1
S1 C5 C12 112.9 110.3
S1 C5 C13 111.7 113.1
C3 C2 H21 112.0 111.1
C3 C2 H22 112.0 111.2
C2 C3 N4 106.2 109.9
C2 C3 H31 113.4 109.4
C2 C3 H32 113.5 109.4
H21 C2 H22 98.4 111.0
N4 C3 H31 113.4 109.4
N4 C3 H32 113.4 109.4
C3 N4 C5 112.9 109.4
C3 N4 C6 121.8 144.2
H31 C3 H32 97.1 109.3
N4 C5 C12 102.9 106.0
N4 C5 C13 116.3 113.4
C5 N4 C6 111.8 106.4
C12 C5 C13 110.5 113.0
C5 C12 C7 109.1 105.4
C5 C12 C11 130.5 134.7
C5 C13 C14 120.2 120.1
C5 C13 C18 120.9 120.0
N4 C6 OE 126.4 125.1
N4 C6 C7 105.8 109.7
OE C6 C7 127.9 125.2
C6 C7 C12 109.4 108.2
C6 C7 C8 130.1 132.6
C12 C7 C8 120.5 119.2
C7 C12 C11 120.2 119.9
C7 C8 C9 119.5 120.0
C7 C8 H81 120.0 120.1
C12 C11 C10 119.6 120.5
C12 C11 H111 120.8 119.5
C9 C8 H81 120.5 120.0
C8 C9 C10 120.2 120.2
C8 C9 H91 119.7 119.9
C10 C9 H91 120.0 119.9
C9 C10 C11 120.0 120.2
C9 C10 H101 120.4 119.9
C11 C10 H101 119.6 119.8
C10 C11 H111 119.6 120.0
C14 C13 C18 118.9 120.0
C13 C14 C15 121.4 120.0
C13 C14 H141 119.4 120.0
C13 C18 C17 120.4 120.0
C13 C18 H181 119.9 120.0
C15 C14 H141 119.2 120.0
C14 C15 CA 120.1 120.0
C14 C15 C16 119.1 120.0
CA C15 C16 120.8 120.0
C15 CA HA1 120.1 109.5
C15 CA HA2 108.4 109.5
C15 CA HA3 108.4 109.5
C15 C16 C17 120.2 120.0
C15 C16 H161 120.1 120.0
HA1 CA HA2 108.4 109.5
HA1 CA HA3 108.4 109.4
HA2 CA HA3 101.5 109.4
C17 C16 H161 119.7 120.0
C16 C17 C18 119.9 120.0
C16 C17 H171 120.0 120.0
C18 C17 H171 120.0 120.0
C17 C18 H181 119.7 120.0

Torsion Angles for BM1

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 S1 C5 N4 9.6 22.8
C2 S1 C5 C12 119.4 134.1
C2 S1 C5 C13 244.6 261.8
C3 C2 S1 H21 234.7 242.1
C3 C2 S1 H22 125.2 118.0
S1 C2 C3 N4 326.2 331.3
S1 C2 C3 H31 91.5 91.4
S1 C2 C3 H32 201.0 211.1
H21 C2 S1 H22 250.5 235.9
C5 S1 C2 C3 14.5 2.4
C5 S1 C2 H21 139.7 120.3
C5 S1 C2 H22 249.2 244.5
C3 N4 C5 S1 328.5 316.0
N4 C5 S1 C12 250.2 248.7
N4 C5 S1 C13 125.0 121.0
S1 C5 N4 C6 110.2 135.2
C12 C5 S1 C13 234.8 232.3
S1 C5 C12 C7 251.1 240.3
S1 C5 C12 C11 76.7 59.2
S1 C5 C13 C14 132.1 329.1
S1 C5 C13 C18 310.4 149.0
C3 C2 S1 C5 14.5 2.4
S1 C2 C3 H21 125.2 117.9
S1 C2 C3 H22 234.8 242.1
H21 C2 C3 H22 109.5 124.1
N4 C3 C2 H31 234.8 239.8
N4 C3 C2 H32 125.2 120.1
C2 C3 N4 C5 44.2 50.9
C2 C3 N4 C6 266.9 232.2
H31 C3 C2 H32 250.5 240.3
H21 C2 S1 C5 139.7 120.3
S1 C2 H21 C3 235.9 248.5
S1 C2 H21 H22 118.0 124.2
C3 C2 H21 H22 242.0 235.8
H21 C2 C3 N4 201.0 213.3
H21 C2 C3 H31 326.2 333.5
H21 C2 C3 H32 75.8 93.2
H22 C2 S1 C5 249.2 244.5
S1 C2 H22 C3 124.1 111.6
S1 C2 H22 H21 242.0 235.8
C3 C2 H22 H21 118.0 124.2
H22 C2 C3 N4 91.5 89.2
H22 C2 C3 H31 216.7 209.3
H22 C2 C3 H32 326.3 329.1
S1 C5 N4 C3 328.5 316.0
N4 C3 C2 H21 201.0 213.3
N4 C3 C2 H22 91.5 89.2
C2 C3 N4 H31 125.2 120.2
C2 C3 N4 H32 234.7 239.9
H31 C3 N4 H32 109.5 119.7
C3 N4 C5 C12 211.3 201.4
C3 N4 C5 C13 90.4 76.8
C5 N4 C3 C6 137.3 178.6
C3 N4 C6 OE 327.9 338.0
C3 N4 C6 C7 148.4 157.9
H31 C3 C2 H21 326.2 333.5
H31 C3 C2 H22 216.7 209.3
C2 C3 H31 N4 238.7 239.5
C2 C3 H31 H32 119.4 119.8
N4 C3 H31 H32 240.7 240.3
H31 C3 N4 C5 279.0 290.7
H31 C3 N4 C6 141.7 112.1
H32 C3 C2 H21 75.8 93.2
H32 C3 C2 H22 326.3 329.1
C2 C3 H32 N4 121.3 120.4
C2 C3 H32 H31 240.6 240.2
N4 C3 H32 H31 119.4 119.8
H32 C3 N4 C5 169.5 171.0
H32 C3 N4 C6 32.2 352.4
S1 C5 N4 C12 117.2 114.7
S1 C5 N4 C13 238.1 239.2
C5 N4 C3 H31 279.0 290.7
C5 N4 C3 H32 169.5 171.0
C3 N4 C5 C6 218.3 180.8
C12 C5 N4 C13 120.9 124.6
N4 C5 C12 C7 0.5 347.8
N4 C5 C12 C11 186.1 166.7
N4 C5 C13 C14 15.4 216.0
N4 C5 C13 C18 193.7 35.9
C5 N4 C6 OE 190.2 159.3
C5 N4 C6 C7 10.7 339.3
S1 C5 C12 N4 250.6 252.5
S1 C5 C12 C13 125.8 127.7
N4 C5 C12 C13 235.2 235.2
C12 C5 N4 C6 352.9 20.5
C12 C5 C13 C14 258.7 95.4
C12 C5 C13 C18 77.0 275.3
C6 C7 C12 C5 5.9 0.3
C5 C12 C7 C8 185.2 181.6
C7 C12 C5 C11 174.4 181.1
C5 C12 C11 C10 173.4 179.5
C5 C12 C11 H111 353.5 360.0
S1 C5 C13 N4 116.7 113.1
S1 C5 C13 C12 233.5 233.8
N4 C5 C13 C12 116.7 120.6
C13 C5 N4 C6 232.0 256.0
C13 C5 C12 C7 125.2 112.6
C13 C5 C12 C11 310.9 291.5
C14 C13 C5 C18 181.7 180.1
C5 C13 C14 C15 178.3 180.4
C5 C13 C14 H141 358.4 359.8
C5 C13 C18 C17 181.9 179.9
C5 C13 C18 H181 1.8 0.0
C6 N4 C3 H31 141.7 112.1
C6 N4 C3 H32 32.2 352.4
C3 N4 C6 C5 137.7 178.6
C6 N4 C5 C12 352.9 20.5
C6 N4 C5 C13 232.0 256.0
OE C6 N4 C7 179.5 180.1
N4 C6 C7 C12 349.9 13.3
N4 C6 C7 C8 170.7 191.7
N4 C6 OE C7 180.6 179.9
OE C6 C7 C12 170.4 193.2
OE C6 C7 C8 351.2 11.6
C5 C12 C7 C6 5.9 0.3
N4 C6 C7 OE 179.5 180.1
C12 C7 C6 C8 179.2 181.6
C6 C7 C12 C11 181.0 181.2
C6 C7 C8 C9 179.1 179.9
C6 C7 C8 H81 359.0 359.8
C7 C12 C5 C13 125.2 112.6
C5 C12 C7 C11 184.9 179.1
C6 C7 C12 C8 180.7 178.6
C12 C7 C8 C9 360.0 358.1
C12 C7 C8 H81 179.9 178.0
C7 C12 C11 C10 359.6 358.2
C7 C12 C11 H111 179.6 178.7
C6 C7 C8 C12 179.1 181.8
C8 C7 C12 C11 0.3 2.6
C9 C8 C7 H81 180.0 180.1
C7 C8 C9 C10 359.9 0.4
C7 C8 C9 H91 179.9 180.4
C11 C12 C5 C13 310.9 291.5
C5 C12 C11 C7 173.9 181.2
C11 C12 C7 C8 0.3 2.6
C9 C10 C11 C12 0.3 0.3
C12 C11 C10 H101 180.4 180.2
C10 C11 C12 H111 180.0 179.5
C7 C8 C9 H81 180.0 179.9
C10 C9 C8 H91 180.0 180.0
C8 C9 C10 C11 359.9 0.4
C8 C9 C10 H101 179.9 180.5
C7 C8 H81 C9 180.0 180.1
H81 C8 C9 C10 180.0 180.5
H81 C8 C9 H91 359.9 0.5
C12 C11 C10 C9 0.3 0.3
C10 C9 C8 H81 180.0 180.5
C8 C9 C10 H91 180.0 180.0
C11 C10 C9 H101 180.0 179.9
C9 C10 C11 H111 180.3 179.8
H91 C9 C8 H81 359.9 0.5
C8 C9 H91 C10 180.0 180.0
H91 C9 C10 C11 179.9 180.4
H91 C9 C10 H101 359.9 0.5
C12 C11 C10 H111 180.0 180.5
C11 C10 C9 H91 179.9 180.4
C9 C10 C11 H101 180.0 180.1
H101 C10 C9 H91 359.9 0.5
C9 C10 H101 C11 180.0 179.9
H101 C10 C11 H111 0.4 359.7
C12 C11 H111 C10 180.0 179.5
H111 C11 C10 H101 0.4 359.7
C5 C13 C14 C18 178.3 179.9
C14 C13 C18 C17 0.2 359.8
C14 C13 C18 H181 180.1 179.9
C15 C14 C13 H141 179.9 180.5
C13 C14 C15 CA 179.8 179.8
C13 C14 C15 C16 359.9 359.5
C5 C13 C18 C14 181.7 180.1
C18 C13 C14 C15 360.0 0.5
C18 C13 C14 H141 180.0 179.9
C16 C17 C18 C13 359.7 360.0
C13 C18 C17 H171 179.7 179.9
C17 C18 C13 H181 180.1 179.9
C15 C14 C13 C18 360.0 0.5
C13 C14 C15 H141 180.1 179.5
CA C15 C14 C16 179.9 180.3
C14 C15 CA HA1 180.0 269.7
C14 C15 CA HA2 305.3 29.7
C14 C15 CA HA3 54.7 149.7
C14 C15 C16 C17 0.0 0.3
C14 C15 C16 H161 180.1 180.3
H141 C14 C13 C18 180.0 179.9
C13 C14 H141 C15 179.9 180.5
H141 C14 C15 CA 359.7 0.3
H141 C14 C15 C16 179.8 180.0
CA C15 C14 H141 359.7 0.3
C14 C15 CA C16 180.1 179.7
CA C15 C16 C17 180.2 180.0
CA C15 C16 H161 0.2 360.0
HA1 CA C15 HA2 234.6 239.9
HA1 CA C15 HA3 125.2 120.0
HA2 CA C15 HA3 250.6 240.0
C16 C15 C14 H141 179.8 180.0
C14 C15 C16 CA 179.9 180.3
C16 C15 CA HA1 359.8 90.0
C16 C15 CA HA2 125.2 210.0
C16 C15 CA HA3 234.6 330.0
C17 C16 C15 H161 180.0 180.0
C15 C16 C17 C18 0.1 360.0
C15 C16 C17 H171 180.2 180.0
HA1 CA C15 C16 359.8 90.0
C15 CA HA1 HA2 125.4 120.0
C15 CA HA1 HA3 234.8 240.0
HA2 CA HA1 HA3 109.4 119.9
HA2 CA C15 C16 125.2 210.0
C15 CA HA2 HA1 228.1 239.9
C15 CA HA2 HA3 114.1 120.0
HA1 CA HA2 HA3 246.0 240.1
HA3 CA C15 C16 234.6 330.0
C15 CA HA3 HA1 131.8 120.0
C15 CA HA3 HA2 245.9 240.0
HA1 CA HA3 HA2 114.1 120.0
C13 C18 C17 C16 359.7 360.0
C15 C16 C17 H161 180.0 180.0
C18 C17 C16 H171 179.9 180.0
C16 C17 C18 H181 179.8 179.9
C15 C16 H161 C17 180.0 180.0
H161 C16 C17 C18 180.1 180.0
H161 C16 C17 H171 0.2 0.0
C13 C18 C17 H181 179.9 180.1
C18 C17 C16 H161 180.1 180.0
C16 C17 C18 H171 180.1 180.0
H171 C17 C16 H161 0.2 0.0
C16 C17 H171 C18 179.9 180.0
H171 C17 C18 H181 359.7 359.9
C13 C18 H181 C17 180.1 179.9
H181 C18 C17 H171 359.7 359.9