PDB Chemical Component BLY
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for BLY
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.456 |
1.469 |
| N |
HN1 |
1.000 |
1.009 |
| N |
HN2 |
1.000 |
1.009 |
| CA |
CB |
1.519 |
1.529 |
| CA |
B |
1.593 |
1.571 |
| CA |
HA |
1.100 |
1.090 |
| CB |
CG |
1.504 |
1.530 |
| CB |
HB1 |
1.100 |
1.091 |
| CB |
HB2 |
1.100 |
1.090 |
| CG |
CD |
1.490 |
1.530 |
| CG |
HG1 |
1.100 |
1.090 |
| CG |
HG2 |
1.100 |
1.090 |
| CD |
CE |
1.521 |
1.530 |
| CD |
HD1 |
1.100 |
1.089 |
| CD |
HD2 |
1.100 |
1.090 |
| CE |
NZ |
1.458 |
1.469 |
| CE |
HE1 |
1.100 |
1.090 |
| CE |
HE2 |
1.100 |
1.089 |
| NZ |
HZ1 |
1.000 |
1.009 |
| NZ |
HZ2 |
1.000 |
1.009 |
| NZ |
HZ3 |
1.000 |
1.009 |
| B |
O |
1.384 |
1.420 |
| B |
OXT |
1.722 |
1.420 |
| O |
HO |
0.950 |
0.967 |
| OXT |
HXT |
0.950 |
0.966 |
Bond Angles for BLY
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
HN1 |
109.5 |
111.0 |
| CA |
N |
HN2 |
109.5 |
111.0 |
| N |
CA |
CB |
103.5 |
109.5 |
| N |
CA |
B |
100.4 |
109.5 |
| N |
CA |
HA |
122.2 |
109.5 |
| HN1 |
N |
HN2 |
109.5 |
111.0 |
| CB |
CA |
B |
118.7 |
109.5 |
| CB |
CA |
HA |
105.0 |
109.5 |
| CA |
CB |
CG |
107.0 |
109.5 |
| CA |
CB |
HB1 |
110.3 |
109.5 |
| CA |
CB |
HB2 |
110.3 |
109.5 |
| B |
CA |
HA |
108.0 |
109.5 |
| CA |
B |
O |
120.1 |
120.0 |
| CA |
B |
OXT |
105.6 |
120.0 |
| CG |
CB |
HB1 |
110.3 |
109.5 |
| CG |
CB |
HB2 |
110.3 |
109.5 |
| CB |
CG |
CD |
109.5 |
109.5 |
| CB |
CG |
HG1 |
109.5 |
109.4 |
| CB |
CG |
HG2 |
109.5 |
109.4 |
| HB1 |
CB |
HB2 |
108.6 |
109.4 |
| CD |
CG |
HG1 |
109.5 |
109.5 |
| CD |
CG |
HG2 |
109.5 |
109.5 |
| CG |
CD |
CE |
107.4 |
109.4 |
| CG |
CD |
HD1 |
110.2 |
109.5 |
| CG |
CD |
HD2 |
110.2 |
109.5 |
| HG1 |
CG |
HG2 |
109.5 |
109.5 |
| CE |
CD |
HD1 |
110.2 |
109.5 |
| CE |
CD |
HD2 |
110.1 |
109.5 |
| CD |
CE |
NZ |
107.8 |
109.4 |
| CD |
CE |
HE1 |
110.1 |
109.5 |
| CD |
CE |
HE2 |
110.1 |
109.5 |
| HD1 |
CD |
HD2 |
108.8 |
109.5 |
| NZ |
CE |
HE1 |
110.0 |
109.4 |
| NZ |
CE |
HE2 |
110.0 |
109.5 |
| CE |
NZ |
HZ1 |
109.5 |
109.5 |
| CE |
NZ |
HZ2 |
109.5 |
109.5 |
| CE |
NZ |
HZ3 |
109.5 |
109.4 |
| HE1 |
CE |
HE2 |
108.9 |
109.5 |
| HZ1 |
NZ |
HZ2 |
109.5 |
109.5 |
| HZ1 |
NZ |
HZ3 |
109.5 |
109.5 |
| HZ2 |
NZ |
HZ3 |
109.5 |
109.5 |
| O |
B |
OXT |
95.5 |
120.0 |
| B |
O |
HO |
109.5 |
114.0 |
| B |
OXT |
HXT |
109.5 |
114.0 |
Torsion Angles for BLY
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| HN1 |
N |
CA |
HN2 |
240.0 |
236.0 |
| CB |
CA |
N |
B |
236.9 |
240.0 |
| CB |
CA |
N |
HA |
117.8 |
120.0 |
| N |
CA |
CB |
CG |
282.3 |
180.0 |
| N |
CA |
CB |
HB1 |
42.4 |
300.0 |
| N |
CA |
CB |
HB2 |
162.3 |
59.9 |
| B |
CA |
N |
HA |
240.9 |
240.0 |
| N |
CA |
B |
O |
35.3 |
150.0 |
| N |
CA |
B |
OXT |
141.4 |
330.0 |
| CA |
N |
HN1 |
HN2 |
120.0 |
124.0 |
| HN1 |
N |
CA |
CB |
180.0 |
300.0 |
| HN1 |
N |
CA |
B |
303.1 |
60.0 |
| HN1 |
N |
CA |
HA |
62.2 |
180.0 |
| CA |
N |
HN2 |
HN1 |
240.0 |
236.0 |
| HN2 |
N |
CA |
CB |
300.0 |
64.0 |
| HN2 |
N |
CA |
B |
63.1 |
184.0 |
| HN2 |
N |
CA |
HA |
182.2 |
304.0 |
| CB |
CA |
N |
HN1 |
180.0 |
300.0 |
| CB |
CA |
N |
HN2 |
300.0 |
64.0 |
| N |
CA |
CB |
B |
110.0 |
120.0 |
| N |
CA |
CB |
HA |
230.8 |
240.0 |
| B |
CA |
CB |
HA |
120.8 |
120.0 |
| CB |
CA |
B |
O |
147.1 |
270.0 |
| CB |
CA |
B |
OXT |
253.2 |
90.0 |
| CG |
CB |
CA |
HB1 |
240.0 |
240.0 |
| CG |
CB |
CA |
HB2 |
120.0 |
120.1 |
| CA |
CB |
CG |
CD |
168.8 |
180.0 |
| CA |
CB |
CG |
HG1 |
288.8 |
300.0 |
| CA |
CB |
CG |
HG2 |
48.8 |
60.0 |
| HB1 |
CB |
CA |
HB2 |
240.0 |
240.1 |
| B |
CA |
N |
HN1 |
303.1 |
60.0 |
| B |
CA |
N |
HN2 |
63.1 |
184.0 |
| N |
CA |
B |
CB |
248.2 |
240.0 |
| N |
CA |
B |
HA |
128.9 |
120.0 |
| CB |
CA |
B |
HA |
240.8 |
240.0 |
| B |
CA |
CB |
CG |
172.3 |
60.0 |
| B |
CA |
CB |
HB1 |
292.3 |
180.0 |
| B |
CA |
CB |
HB2 |
52.3 |
300.0 |
| O |
B |
CA |
OXT |
254.0 |
180.0 |
| CA |
B |
O |
HO |
180.0 |
180.0 |
| CA |
B |
OXT |
HXT |
180.0 |
180.0 |
| HA |
CA |
N |
HN1 |
62.2 |
180.0 |
| HA |
CA |
N |
HN2 |
182.2 |
304.0 |
| N |
CA |
HA |
CB |
117.1 |
120.0 |
| N |
CA |
HA |
B |
244.7 |
240.0 |
| CB |
CA |
HA |
B |
127.6 |
120.0 |
| HA |
CA |
CB |
CG |
51.5 |
300.0 |
| HA |
CA |
CB |
HB1 |
171.5 |
60.0 |
| HA |
CA |
CB |
HB2 |
291.5 |
179.9 |
| HA |
CA |
B |
O |
266.4 |
30.0 |
| HA |
CA |
B |
OXT |
12.4 |
210.0 |
| CG |
CB |
CA |
B |
172.3 |
60.0 |
| CG |
CB |
CA |
HA |
51.5 |
300.0 |
| CA |
CB |
CG |
HB1 |
120.0 |
120.0 |
| CA |
CB |
CG |
HB2 |
240.0 |
239.9 |
| HB1 |
CB |
CG |
HB2 |
120.0 |
119.9 |
| CD |
CG |
CB |
HG1 |
240.0 |
240.0 |
| CD |
CG |
CB |
HG2 |
120.0 |
120.0 |
| CB |
CG |
CD |
CE |
173.7 |
180.0 |
| CB |
CG |
CD |
HD1 |
293.7 |
300.0 |
| CB |
CG |
CD |
HD2 |
53.7 |
60.0 |
| HG1 |
CG |
CB |
HG2 |
240.0 |
240.0 |
| HB1 |
CB |
CA |
B |
292.3 |
180.0 |
| HB1 |
CB |
CA |
HA |
171.5 |
60.0 |
| CA |
CB |
HB1 |
CG |
242.0 |
240.0 |
| CA |
CB |
HB1 |
HB2 |
121.0 |
120.0 |
| CG |
CB |
HB1 |
HB2 |
239.0 |
240.0 |
| HB1 |
CB |
CG |
CD |
48.8 |
59.9 |
| HB1 |
CB |
CG |
HG1 |
168.8 |
180.0 |
| HB1 |
CB |
CG |
HG2 |
288.8 |
300.0 |
| HB2 |
CB |
CA |
B |
52.3 |
300.0 |
| HB2 |
CB |
CA |
HA |
291.5 |
179.9 |
| CA |
CB |
HB2 |
CG |
118.0 |
120.1 |
| CA |
CB |
HB2 |
HB1 |
239.0 |
240.0 |
| CG |
CB |
HB2 |
HB1 |
121.0 |
119.9 |
| HB2 |
CB |
CG |
CD |
288.8 |
300.0 |
| HB2 |
CB |
CG |
HG1 |
48.8 |
60.1 |
| HB2 |
CB |
CG |
HG2 |
168.8 |
180.0 |
| CD |
CG |
CB |
HB1 |
48.8 |
59.9 |
| CD |
CG |
CB |
HB2 |
288.8 |
300.0 |
| CB |
CG |
CD |
HG1 |
120.0 |
120.0 |
| CB |
CG |
CD |
HG2 |
240.0 |
240.0 |
| HG1 |
CG |
CD |
HG2 |
120.0 |
120.0 |
| CE |
CD |
CG |
HD1 |
240.0 |
240.0 |
| CE |
CD |
CG |
HD2 |
120.0 |
120.0 |
| CG |
CD |
CE |
NZ |
184.8 |
180.0 |
| CG |
CD |
CE |
HE1 |
304.8 |
299.9 |
| CG |
CD |
CE |
HE2 |
64.8 |
60.0 |
| HD1 |
CD |
CG |
HD2 |
240.0 |
240.0 |
| HG1 |
CG |
CB |
HB1 |
168.8 |
180.0 |
| HG1 |
CG |
CB |
HB2 |
48.8 |
60.1 |
| CB |
CG |
HG1 |
CD |
240.0 |
240.0 |
| CB |
CG |
HG1 |
HG2 |
120.0 |
119.9 |
| CD |
CG |
HG1 |
HG2 |
240.0 |
240.0 |
| HG1 |
CG |
CD |
CE |
53.7 |
60.0 |
| HG1 |
CG |
CD |
HD1 |
173.7 |
180.0 |
| HG1 |
CG |
CD |
HD2 |
293.7 |
300.0 |
| HG2 |
CG |
CB |
HB1 |
288.8 |
300.0 |
| HG2 |
CG |
CB |
HB2 |
168.8 |
180.0 |
| CB |
CG |
HG2 |
CD |
120.0 |
120.0 |
| CB |
CG |
HG2 |
HG1 |
240.0 |
240.1 |
| CD |
CG |
HG2 |
HG1 |
120.0 |
120.0 |
| HG2 |
CG |
CD |
CE |
293.7 |
300.0 |
| HG2 |
CG |
CD |
HD1 |
53.7 |
60.0 |
| HG2 |
CG |
CD |
HD2 |
173.7 |
180.0 |
| CE |
CD |
CG |
HG1 |
53.7 |
60.0 |
| CE |
CD |
CG |
HG2 |
293.7 |
300.0 |
| CG |
CD |
CE |
HD1 |
120.0 |
120.0 |
| CG |
CD |
CE |
HD2 |
240.0 |
240.0 |
| HD1 |
CD |
CE |
HD2 |
120.0 |
120.0 |
| NZ |
CE |
CD |
HE1 |
240.0 |
240.1 |
| NZ |
CE |
CD |
HE2 |
120.0 |
120.0 |
| CD |
CE |
NZ |
HZ1 |
180.0 |
300.0 |
| CD |
CE |
NZ |
HZ2 |
300.0 |
60.0 |
| CD |
CE |
NZ |
HZ3 |
60.0 |
180.0 |
| HE1 |
CE |
CD |
HE2 |
240.0 |
239.9 |
| HD1 |
CD |
CG |
HG1 |
173.7 |
180.0 |
| HD1 |
CD |
CG |
HG2 |
53.7 |
60.0 |
| CG |
CD |
HD1 |
CE |
241.7 |
240.0 |
| CG |
CD |
HD1 |
HD2 |
120.9 |
120.0 |
| CE |
CD |
HD1 |
HD2 |
239.2 |
240.0 |
| HD1 |
CD |
CE |
NZ |
64.8 |
60.0 |
| HD1 |
CD |
CE |
HE1 |
184.8 |
180.0 |
| HD1 |
CD |
CE |
HE2 |
304.8 |
300.0 |
| HD2 |
CD |
CG |
HG1 |
293.7 |
300.0 |
| HD2 |
CD |
CG |
HG2 |
173.7 |
180.0 |
| CG |
CD |
HD2 |
CE |
118.3 |
120.0 |
| CG |
CD |
HD2 |
HD1 |
239.1 |
240.0 |
| CE |
CD |
HD2 |
HD1 |
120.8 |
120.0 |
| HD2 |
CD |
CE |
NZ |
304.8 |
300.0 |
| HD2 |
CD |
CE |
HE1 |
64.8 |
59.9 |
| HD2 |
CD |
CE |
HE2 |
184.8 |
180.0 |
| NZ |
CE |
CD |
HD1 |
64.8 |
60.0 |
| NZ |
CE |
CD |
HD2 |
304.8 |
300.0 |
| CD |
CE |
NZ |
HE1 |
120.0 |
120.0 |
| CD |
CE |
NZ |
HE2 |
240.0 |
240.0 |
| HE1 |
CE |
NZ |
HE2 |
120.0 |
120.0 |
| HZ1 |
NZ |
CE |
HZ2 |
240.0 |
240.0 |
| HZ1 |
NZ |
CE |
HZ3 |
120.0 |
120.0 |
| HZ2 |
NZ |
CE |
HZ3 |
240.0 |
240.0 |
| HE1 |
CE |
CD |
HD1 |
184.8 |
180.0 |
| HE1 |
CE |
CD |
HD2 |
64.8 |
59.9 |
| CD |
CE |
HE1 |
NZ |
241.4 |
240.1 |
| CD |
CE |
HE1 |
HE2 |
120.7 |
120.0 |
| NZ |
CE |
HE1 |
HE2 |
239.3 |
240.0 |
| HE1 |
CE |
NZ |
HZ1 |
60.0 |
180.0 |
| HE1 |
CE |
NZ |
HZ2 |
180.0 |
300.0 |
| HE1 |
CE |
NZ |
HZ3 |
300.0 |
60.0 |
| HE2 |
CE |
CD |
HD1 |
304.8 |
300.0 |
| HE2 |
CE |
CD |
HD2 |
184.8 |
180.0 |
| CD |
CE |
HE2 |
NZ |
118.6 |
120.0 |
| CD |
CE |
HE2 |
HE1 |
239.3 |
239.9 |
| NZ |
CE |
HE2 |
HE1 |
120.7 |
120.0 |
| HE2 |
CE |
NZ |
HZ1 |
300.0 |
60.0 |
| HE2 |
CE |
NZ |
HZ2 |
60.0 |
180.0 |
| HE2 |
CE |
NZ |
HZ3 |
180.0 |
300.0 |
| HZ1 |
NZ |
CE |
HE1 |
60.0 |
180.0 |
| HZ1 |
NZ |
CE |
HE2 |
300.0 |
60.0 |
| CE |
NZ |
HZ1 |
HZ2 |
120.0 |
120.0 |
| CE |
NZ |
HZ1 |
HZ3 |
240.0 |
240.1 |
| HZ2 |
NZ |
HZ1 |
HZ3 |
120.0 |
120.0 |
| HZ2 |
NZ |
CE |
HE1 |
180.0 |
300.0 |
| HZ2 |
NZ |
CE |
HE2 |
60.0 |
180.0 |
| CE |
NZ |
HZ2 |
HZ1 |
240.0 |
240.0 |
| CE |
NZ |
HZ2 |
HZ3 |
120.0 |
119.9 |
| HZ1 |
NZ |
HZ2 |
HZ3 |
240.0 |
240.0 |
| HZ3 |
NZ |
CE |
HE1 |
300.0 |
60.0 |
| HZ3 |
NZ |
CE |
HE2 |
180.0 |
300.0 |
| CE |
NZ |
HZ3 |
HZ1 |
120.0 |
120.0 |
| CE |
NZ |
HZ3 |
HZ2 |
240.0 |
240.0 |
| HZ1 |
NZ |
HZ3 |
HZ2 |
120.0 |
120.0 |
| O |
B |
CA |
HA |
266.4 |
30.0 |
| CA |
B |
O |
OXT |
111.6 |
180.0 |
| O |
B |
OXT |
HXT |
303.4 |
0.0 |
| OXT |
B |
CA |
HA |
12.4 |
210.0 |
| CA |
B |
OXT |
O |
236.6 |
180.0 |
| OXT |
B |
O |
HO |
68.4 |
360.0 |
| HO |
O |
B |
OXT |
68.4 |
360.0 |