PDB Chemical Component BLS

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for BLS

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O4 C6' 1.164 1.341
O4 HO4 0.950 0.967
N1 C2 1.444 1.346
N1 C6 1.380 1.362
N1 C1' 1.490 1.465
C2 O2 1.188 1.220
C2 N3 1.408 1.332
N3 C4 1.364 1.327
C4 N4 1.382 1.375
C4 C5 1.396 1.410
N4 HN41 1.000 0.971
N4 HN42 1.000 0.970
C5 C6 1.404 1.354
C5 H5 1.080 1.080
C6 H6 1.080 1.080
C1' C2' 1.459 1.502
C1' O5' 1.507 1.426
C1' H1' 1.100 1.090
C2' C3' 1.415 1.304
C2' H2' 1.080 1.080
C3' C4' 1.584 1.506
C3' H3' 1.081 1.080
C4' C5' 1.441 1.532
C4' N6 1.539 1.466
C4' H4' 1.100 1.090
C5' O5' 1.491 1.431
C5' C6' 1.562 1.507
C5' H5' 1.100 1.089
O3 C6' 1.344 1.208
N6 C7 1.363 1.348
N6 HN6 1.000 0.970
C7 O7 1.240 1.213
C7 C8 1.550 1.507
C8 C9 1.488 1.530
C8 H81 1.100 1.090
C8 H82 1.100 1.090
C9 N9 1.541 1.469
C9 C10 1.400 1.530
C9 H9 1.100 1.090
N9 HN91 1.000 1.009
N9 HN92 1.000 1.009
C10 C11 1.533 1.530
C10 H101 1.099 1.090
C10 H102 1.100 1.090
C11 N12 1.516 1.465
C11 H111 1.100 1.090
C11 H112 1.099 1.090
N12 C13 1.462 1.465
N12 C14 1.318 1.375
C13 H131 1.100 1.089
C13 H132 1.100 1.091
C13 H133 1.100 1.090
C14 N14 1.397 1.302
C14 N15 1.334 1.375
N14 HN14 1.000 0.970
N15 H151 1.000 0.970
N15 H152 1.000 0.971

Bond Angles for BLS

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C6' O4 HO4 109.5 120.0
O4 C6' C5' 122.0 120.0
O4 C6' O3 130.0 120.0
C2 N1 C6 121.1 120.4
C2 N1 C1' 119.7 119.8
N1 C2 O2 123.9 119.5
N1 C2 N3 118.9 121.1
C6 N1 C1' 119.2 119.9
N1 C6 C5 118.0 119.3
N1 C6 H6 121.0 120.4
N1 C1' C2' 112.2 109.3
N1 C1' O5' 105.6 109.2
N1 C1' H1' 110.7 109.2
O2 C2 N3 117.1 119.5
C2 N3 C4 119.2 120.7
N3 C4 N4 116.9 120.2
N3 C4 C5 121.6 119.6
N4 C4 C5 121.4 120.2
C4 N4 HN41 125.5 120.0
C4 N4 HN42 109.0 120.0
C4 C5 C6 121.1 119.0
C4 C5 H5 119.4 120.5
HN41 N4 HN42 125.5 120.0
C6 C5 H5 119.5 120.5
C5 C6 H6 121.0 120.3
C2' C1' O5' 110.7 110.8
C2' C1' H1' 105.6 109.2
C1' C2' C3' 121.9 122.3
C1' C2' H2' 119.1 118.8
O5' C1' H1' 112.2 109.2
C1' O5' C5' 110.3 107.1
C3' C2' H2' 119.0 118.8
C2' C3' C4' 115.7 121.0
C2' C3' H3' 122.2 119.4
C4' C3' H3' 122.2 119.5
C3' C4' C5' 118.9 109.1
C3' C4' N6 110.7 109.5
C3' C4' H4' 102.2 109.6
C5' C4' N6 111.4 109.5
C5' C4' H4' 101.4 109.6
C4' C5' O5' 107.2 108.6
C4' C5' C6' 114.4 109.9
C4' C5' H5' 106.7 109.5
N6 C4' H4' 111.4 109.5
C4' N6 C7 128.3 120.0
C4' N6 HN6 115.8 120.0
O5' C5' C6' 106.1 109.6
O5' C5' H5' 114.9 109.6
C6' C5' H5' 107.7 109.6
C5' C6' O3 108.0 120.0
C7 N6 HN6 115.8 120.0
N6 C7 O7 117.7 120.0
N6 C7 C8 110.9 120.0
O7 C7 C8 131.3 120.1
C7 C8 C9 111.2 109.4
C7 C8 H81 108.5 109.5
C7 C8 H82 108.9 109.5
C9 C8 H81 108.5 109.4
C9 C8 H82 108.9 109.4
C8 C9 N9 116.4 109.5
C8 C9 C10 109.1 109.5
C8 C9 H9 103.6 109.5
H81 C8 H82 110.8 109.5
N9 C9 C10 104.9 109.5
N9 C9 H9 107.8 109.5
C9 N9 HN91 109.5 106.7
C9 N9 HN92 109.5 106.7
C10 C9 H9 115.3 109.4
C9 C10 C11 115.5 109.5
C9 C10 H101 106.1 109.5
C9 C10 H102 107.5 109.5
HN91 N9 HN92 109.5 106.7
C11 C10 H101 106.1 109.5
C11 C10 H102 107.5 109.5
C10 C11 N12 109.1 109.5
C10 C11 H111 109.7 109.5
C10 C11 H112 109.6 109.5
H101 C10 H102 114.3 109.4
N12 C11 H111 109.7 109.4
N12 C11 H112 109.6 109.5
C11 N12 C13 115.3 120.0
C11 N12 C14 121.5 120.0
H111 C11 H112 109.2 109.5
C13 N12 C14 123.2 120.0
N12 C13 H131 109.4 109.5
N12 C13 H132 109.5 109.4
N12 C13 H133 109.5 109.5
N12 C14 N14 114.5 120.0
N12 C14 N15 127.6 120.0
H131 C13 H132 109.5 109.5
H131 C13 H133 109.5 109.5
H132 C13 H133 109.5 109.5
N14 C14 N15 116.4 120.0
C14 N14 HN14 109.0 120.0
C14 N15 H151 125.3 120.0
C14 N15 H152 109.4 120.0
H151 N15 H152 125.3 120.0

Torsion Angles for BLS

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C4' C5' C6' O4 76.1 294.3
O5' C5' C6' O4 318.1 175.0
O4 C6' C5' H5' 194.6 54.7
C5' C6' O4 O3 180.5 180.0
HO4 O4 C6' C5' 180.5 180.0
HO4 O4 C6' O3 360.0 360.0
C6 N1 C2 C1' 181.1 179.8
C2 N1 C6 C5 359.8 0.3
C2 N1 C6 H6 179.7 180.2
C2 N1 C1' C2' 80.7 294.7
C2 N1 C1' O5' 201.4 56.1
C2 N1 C1' H1' 323.0 175.4
O2 C2 N1 N3 179.0 180.5
N1 C2 N3 C4 1.4 0.6
C2 N1 C6 C1' 178.9 180.2
C6 N1 C2 O2 177.7 180.0
C6 N1 C2 N3 358.6 359.4
C6 N1 C1' C2' 259.6 115.0
C6 N1 C1' O5' 20.3 236.3
C6 N1 C1' H1' 142.0 355.6
C4 C5 C6 N1 1.8 360.0
N1 C6 C5 H5 181.8 180.0
C5 C6 N1 H6 180.0 180.1
C2 N1 C1' C6 181.1 179.8
C1' N1 C2 O2 356.6 0.2
C1' N1 C2 N3 177.5 179.7
C1' N1 C6 C5 180.8 180.1
C1' N1 C6 H6 0.8 360.0
C2' C1' N1 O5' 239.3 238.6
C2' C1' N1 H1' 117.7 119.4
N1 C1' C2' C3' 143.3 141.2
N1 C1' C2' H2' 323.4 321.3
O5' C1' N1 H1' 238.4 240.7
N1 C1' O5' C5' 177.9 182.9
O2 C2 N1 C6 177.7 180.0
O2 C2 N1 C1' 356.6 0.2
N1 C2 O2 N3 180.9 179.5
O2 C2 N3 C4 182.3 180.0
N3 C2 N1 C6 358.6 359.4
N3 C2 N1 C1' 177.5 179.7
N1 C2 N3 O2 179.1 180.5
C2 N3 C4 N4 178.7 179.7
C2 N3 C4 C5 0.1 359.7
N4 C4 N3 C5 178.5 180.0
N3 C4 N4 HN41 0.0 180.0
N3 C4 N4 HN42 180.0 360.0
N3 C4 C5 C6 358.2 0.0
N3 C4 C5 H5 178.2 180.0
N3 C4 N4 C5 181.5 180.0
N4 C4 C5 C6 179.7 180.0
N4 C4 C5 H5 359.7 360.0
HN41 N4 C4 HN42 180.0 180.0
N1 C6 C5 C4 1.8 360.0
N3 C4 C5 N4 178.5 180.0
C5 C4 N4 HN41 178.6 360.0
C5 C4 N4 HN42 358.5 180.0
C6 C5 C4 H5 180.0 180.0
C4 C5 C6 H6 181.8 180.0
HN41 N4 C4 C5 178.6 360.0
C4 N4 HN41 HN42 180.0 180.0
HN42 N4 C4 C5 358.5 180.0
C4 N4 HN42 HN41 180.0 180.0
C5 C6 N1 C1' 180.8 180.1
N1 C6 C5 H6 180.0 179.9
C4 C5 C6 H5 180.0 180.0
C4 C5 H5 C6 180.0 180.0
H5 C5 C6 H6 1.8 0.1
H6 C6 N1 C1' 0.8 360.0
N1 C6 H6 C5 180.0 180.1
H6 C6 C5 H5 1.8 0.1
N1 C1' C2' O5' 117.6 120.4
N1 C1' C2' H1' 239.3 240.6
O5' C1' C2' H1' 121.7 120.3
C2' C1' O5' C5' 299.5 303.3
C3' C2' C1' H2' 180.0 179.9
C1' C2' C3' C4' 0.5 360.0
C1' C2' C3' H3' 180.5 180.0
N1 C1' O5' C2' 238.4 239.6
N1 C1' O5' H1' 120.7 119.3
C2' C1' O5' H1' 242.3 239.7
O5' C1' C2' C3' 25.7 20.8
O5' C1' C2' H2' 205.7 200.9
C4' C5' O5' C1' 66.4 73.6
C1' O5' C5' C6' 189.1 193.6
C1' O5' C5' H5' 308.0 314.0
N1 C1' H1' C2' 121.6 119.4
N1 C1' H1' O5' 242.3 240.7
C2' C1' H1' O5' 120.7 121.3
H1' C1' C2' C3' 264.0 260.5
H1' C1' C2' H2' 84.0 80.6
H1' C1' O5' C5' 57.2 63.6
C3' C2' C1' O5' 25.7 20.8
C3' C2' C1' H1' 264.0 260.5
C1' C2' C3' H2' 180.0 180.1
C4' C3' C2' H3' 180.0 180.0
C2' C3' C4' C5' 6.8 14.5
C2' C3' C4' N6 137.6 134.3
C2' C3' C4' H4' 256.3 254.5
H2' C2' C1' O5' 205.7 200.9
H2' C2' C1' H1' 84.0 80.6
C1' C2' H2' C3' 180.0 179.9
H2' C2' C3' C4' 180.5 179.8
H2' C2' C3' H3' 0.4 359.9
C4' C3' C2' H2' 180.5 179.8
C2' C3' C4' H3' 180.0 180.0
C5' C4' C3' N6 229.2 240.1
C5' C4' C3' H4' 110.5 120.0
C3' C4' C5' O5' 321.1 309.6
C3' C4' C5' C6' 203.7 189.7
C3' C4' C5' H5' 84.6 69.2
N6 C4' C3' H4' 241.3 239.8
C3' C4' N6 C7 94.4 85.2
C3' C4' N6 HN6 274.4 265.2
H3' C3' C2' H2' 0.4 359.9
C2' C3' H3' C4' 180.0 180.0
H3' C3' C4' C5' 186.8 194.4
H3' C3' C4' N6 317.6 314.3
H3' C3' C4' H4' 76.4 74.5
O4 C6' C5' C4' 76.1 294.3
C1' O5' C5' C4' 66.4 73.6
C5' C4' C3' H3' 186.8 194.4
C3' C4' C5' N6 130.5 119.9
C3' C4' C5' H4' 249.1 240.0
N6 C4' C5' H4' 118.5 120.1
C5' C4' N6 C7 229.1 204.8
C5' C4' N6 HN6 49.0 24.8
O5' C5' C4' C6' 117.4 119.9
O5' C5' C4' H5' 236.4 240.4
C6' C5' C4' H5' 119.0 120.5
C4' C5' C6' O3 256.5 114.3
N6 C4' C3' H3' 317.6 314.3
C3' C4' N6 C5' 225.4 240.4
C3' C4' N6 H4' 113.0 120.2
C5' C4' N6 H4' 247.6 239.8
N6 C4' C5' O5' 190.5 189.7
N6 C4' C5' C6' 73.2 69.8
N6 C4' C5' H5' 314.1 309.3
C7 N6 C4' HN6 180.0 180.0
C4' N6 C7 O7 0.1 0.0
C4' N6 C7 C8 178.3 180.0
H4' C4' C3' H3' 76.4 74.5
C3' C4' H4' C5' 123.2 119.7
C3' C4' H4' N6 241.8 239.8
C5' C4' H4' N6 118.6 120.1
H4' C4' C5' O5' 72.0 69.5
H4' C4' C5' C6' 314.6 309.6
H4' C4' C5' H5' 195.6 189.2
H4' C4' N6 C7 341.4 325.0
H4' C4' N6 HN6 161.4 145.0
O4 C6' C5' O5' 318.1 175.0
C5' O5' C1' H1' 57.2 63.6
O5' C5' C4' N6 190.5 189.7
O5' C5' C4' H4' 72.0 69.5
C4' C5' O5' C6' 237.3 239.9
C4' C5' O5' H5' 118.4 119.6
C6' C5' O5' H5' 241.1 239.6
O5' C5' C6' O3 138.5 355.0
C5' C6' O4 HO4 180.5 180.0
O4 C6' C5' O3 179.6 180.0
C6' C5' C4' N6 73.2 69.8
C6' C5' C4' H4' 314.6 309.6
C4' C5' C6' O5' 118.0 119.3
C4' C5' C6' H5' 241.5 239.6
O5' C5' C6' H5' 123.6 120.3
H5' C5' C4' N6 314.1 309.3
H5' C5' C4' H4' 195.6 189.2
C4' C5' H5' O5' 241.3 240.9
C4' C5' H5' C6' 123.3 120.6
O5' C5' H5' C6' 242.0 239.7
H5' C5' C6' O3 14.9 234.7
O3 C6' O4 HO4 360.0 360.0
O4 C6' O3 C5' 180.4 180.0
O3 C6' C5' H5' 14.9 234.7
C7 N6 C4' H4' 341.4 325.0
C4' N6 C7 HN6 180.0 180.0
O7 C7 N6 C8 181.9 180.0
N6 C7 C8 C9 280.7 180.0
N6 C7 C8 H81 161.4 60.1
N6 C7 C8 H82 40.7 300.0
HN6 N6 C4' H4' 161.4 145.0
C4' N6 HN6 C7 180.0 180.0
HN6 N6 C7 O7 180.1 180.0
HN6 N6 C7 C8 358.3 360.0
O7 C7 N6 HN6 180.1 180.0
N6 C7 O7 C8 177.7 180.0
O7 C7 C8 C9 98.5 360.0
O7 C7 C8 H81 339.2 240.0
O7 C7 C8 H82 218.5 119.9
C8 C7 N6 HN6 358.3 360.0
N6 C7 C8 O7 182.2 180.0
C9 C8 C7 H81 119.3 119.9
C9 C8 C7 H82 240.0 240.0
C7 C8 C9 N9 181.0 65.1
C7 C8 C9 C10 299.4 185.0
C7 C8 C9 H9 62.8 305.0
H81 C8 C7 H82 120.7 120.1
C7 C8 C9 H81 240.7 240.0
C7 C8 C9 H82 120.0 120.0
H81 C8 C9 H82 239.3 240.0
N9 C9 C8 C10 241.5 240.0
N9 C9 C8 H9 118.2 120.0
C8 C9 N9 HN91 170.7 306.2
C8 C9 N9 HN92 50.7 60.0
C10 C9 C8 H9 236.6 240.0
C8 C9 C10 C11 122.9 175.0
C8 C9 C10 H101 5.7 55.0
C8 C9 C10 H102 242.9 295.0
C7 C8 H81 C9 121.0 119.9
C7 C8 H81 H82 240.5 239.9
C9 C8 H81 H82 119.5 120.0
H81 C8 C9 N9 300.2 185.0
H81 C8 C9 C10 58.7 305.0
H81 C8 C9 H9 182.0 65.0
C7 C8 H82 C9 238.6 240.0
C7 C8 H82 H81 119.3 120.1
C9 C8 H82 H81 240.7 240.1
H82 C8 C9 N9 61.0 305.0
H82 C8 C9 C10 179.4 65.0
H82 C8 C9 H9 302.8 185.0
N9 C9 C8 H81 300.2 185.0
N9 C9 C8 H82 61.0 305.0
C8 C9 N9 C10 120.7 120.0
C8 C9 N9 H9 244.1 239.9
C10 C9 N9 H9 123.5 120.0
N9 C9 C10 C11 248.4 295.0
N9 C9 C10 H101 131.1 175.0
N9 C9 C10 H102 8.4 55.0
HN91 N9 C9 HN92 120.0 246.2
C10 C9 C8 H81 58.7 305.0
C10 C9 C8 H82 179.4 65.0
C8 C9 C10 N9 234.6 240.0
C8 C9 C10 H9 116.1 120.0
N9 C9 C10 H9 241.5 240.0
C10 C9 N9 HN91 50.0 186.2
C10 C9 N9 HN92 290.0 300.0
C11 C10 C9 H101 117.3 120.0
C11 C10 C9 H102 240.0 240.0
C9 C10 C11 N12 173.3 180.0
C9 C10 C11 H111 53.2 60.0
C9 C10 C11 H112 293.3 300.0
H101 C10 C9 H102 122.7 120.0
H9 C9 C8 H81 182.0 65.0
H9 C9 C8 H82 302.8 185.0
C8 C9 H9 N9 124.0 120.0
C8 C9 H9 C10 240.9 240.0
N9 C9 H9 C10 116.9 120.0
H9 C9 N9 HN91 286.6 66.2
H9 C9 N9 HN92 166.5 180.0
H9 C9 C10 C11 6.9 55.0
H9 C9 C10 H101 249.6 295.0
H9 C9 C10 H102 126.9 175.0
HN91 N9 C9 C10 50.0 186.2
HN91 N9 C9 H9 286.6 66.2
C9 N9 HN91 HN92 240.0 113.8
HN92 N9 C9 C10 290.0 300.0
HN92 N9 C9 H9 166.5 180.0
C9 N9 HN92 HN91 120.0 246.2
C11 C10 C9 H9 6.9 55.0
C9 C10 C11 H101 242.7 240.0
C9 C10 C11 H102 120.0 120.0
H101 C10 C11 H102 237.3 240.0
N12 C11 C10 H111 120.2 120.0
N12 C11 C10 H112 240.0 240.0
C10 C11 N12 C13 82.5 90.0
C10 C11 N12 C14 263.2 270.0
H111 C11 C10 H112 119.8 120.0
H101 C10 C9 H9 249.6 295.0
C9 C10 H101 C11 123.4 120.0
C9 C10 H101 H102 241.7 240.0
C11 C10 H101 H102 118.3 120.0
H101 C10 C11 N12 290.6 300.0
H101 C10 C11 H111 170.5 180.1
H101 C10 C11 H112 50.6 60.0
H102 C10 C9 H9 126.9 175.0
C9 C10 H102 C11 235.0 240.0
C9 C10 H102 H101 117.6 120.0
C11 C10 H102 H101 242.5 240.0
H102 C10 C11 N12 53.3 60.0
H102 C10 C11 H111 293.2 300.0
H102 C10 C11 H112 173.3 180.0
N12 C11 C10 H101 290.6 300.0
N12 C11 C10 H102 53.3 60.0
C10 C11 N12 H111 239.8 240.0
C10 C11 N12 H112 120.0 120.0
H111 C11 N12 H112 240.2 240.0
C13 N12 C11 C14 179.4 180.0
C11 N12 C13 H131 42.9 360.0
C11 N12 C13 H132 282.9 120.0
C11 N12 C13 H133 162.9 240.0
C11 N12 C14 N14 195.5 180.0
C11 N12 C14 N15 1.1 0.0
H111 C11 C10 H101 170.5 180.1
H111 C11 C10 H102 293.2 300.0
C10 C11 H111 N12 119.8 120.0
C10 C11 H111 H112 239.9 240.0
N12 C11 H111 H112 120.1 120.0
H111 C11 N12 C13 202.7 210.0
H111 C11 N12 C14 23.3 30.0
H112 C11 C10 H101 50.6 60.0
H112 C11 C10 H102 173.3 180.0
C10 C11 H112 N12 240.3 240.0
C10 C11 H112 H111 120.2 120.0
N12 C11 H112 H111 239.8 240.1
H112 C11 N12 C13 322.5 330.0
H112 C11 N12 C14 143.2 150.0
C13 N12 C11 H111 202.7 210.0
C13 N12 C11 H112 322.5 330.0
C11 N12 C13 C14 180.7 180.0
C13 N12 C14 N14 16.1 360.0
C13 N12 C14 N15 181.8 180.0
H131 C13 N12 H132 120.0 240.0
H131 C13 N12 H133 240.0 120.0
H132 C13 N12 H133 120.0 240.0
C14 N12 C11 H111 23.3 30.0
C14 N12 C11 H112 143.2 150.0
C11 N12 C14 C13 179.3 180.0
C14 N12 C13 H131 222.3 180.0
C14 N12 C13 H132 102.2 300.0
C14 N12 C13 H133 342.3 60.0
N14 C14 N12 N15 194.4 180.0
N12 C14 N14 HN14 180.0 180.0
N12 C14 N15 H151 188.9 180.0
N12 C14 N15 H152 8.9 360.0
H131 C13 N12 C14 222.3 180.0
N12 C13 H131 H132 240.0 120.0
N12 C13 H131 H133 120.0 240.0
H132 C13 H131 H133 240.0 120.0
H132 C13 N12 C14 102.2 300.0
N12 C13 H132 H131 120.0 240.0
N12 C13 H132 H133 240.0 120.0
H131 C13 H132 H133 120.0 240.0
H133 C13 N12 C14 342.3 60.0
N12 C13 H133 H131 240.0 120.0
N12 C13 H133 H132 120.0 240.0
H131 C13 H133 H132 240.0 120.0
N12 C14 N14 N15 167.3 180.0
N14 C14 N15 H151 354.3 0.0
N14 C14 N15 H152 174.3 180.0
N12 C14 N15 N14 194.6 180.0
N15 C14 N14 HN14 12.6 360.0
H151 N15 C14 H152 180.0 180.0
HN14 N14 C14 N15 12.6 360.0
C14 N15 H151 H152 180.0 180.0
C14 N15 H152 H151 180.0 180.0