PDB Chemical Component BL2
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for BL2
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C3 |
CT |
1.517 |
1.530 |
| CT |
C1 |
1.488 |
1.530 |
| CT |
O2 |
1.409 |
1.452 |
| CT |
C2 |
1.505 |
1.530 |
| O |
C |
1.232 |
1.208 |
| O1 |
CX |
1.172 |
1.216 |
| O2 |
CX |
1.451 |
1.345 |
| CX |
N |
1.294 |
1.348 |
| C |
OXT |
1.231 |
1.342 |
| C |
CA |
1.525 |
1.507 |
| N |
CA |
1.458 |
1.465 |
| CA |
CB |
1.529 |
1.531 |
| CB |
CG |
1.530 |
1.530 |
| CG |
CD2 |
1.521 |
1.530 |
| CG |
CD1 |
1.521 |
1.530 |
| C1 |
H1 |
1.100 |
1.090 |
| C1 |
H2 |
1.100 |
1.090 |
| C1 |
H3 |
1.100 |
1.089 |
| C2 |
H4 |
1.100 |
1.090 |
| C2 |
H5 |
1.100 |
1.090 |
| C2 |
H6 |
1.100 |
1.090 |
| C3 |
H7 |
1.100 |
1.090 |
| C3 |
H8 |
1.100 |
1.090 |
| C3 |
H9 |
1.100 |
1.090 |
| N |
H10 |
1.000 |
0.970 |
| CA |
H11 |
1.100 |
1.090 |
| CB |
H12 |
1.100 |
1.090 |
| CB |
H13 |
1.100 |
1.089 |
| CG |
H14 |
1.100 |
1.091 |
| CD1 |
H15 |
1.100 |
1.091 |
| CD1 |
H16 |
1.100 |
1.090 |
| CD1 |
H17 |
1.100 |
1.091 |
| CD2 |
H18 |
1.100 |
1.089 |
| CD2 |
H19 |
1.100 |
1.090 |
| CD2 |
H20 |
1.101 |
1.091 |
| OXT |
H21 |
0.950 |
0.967 |
Bond Angles for BL2
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1 |
CT |
C2 |
109.5 |
109.5 |
| CT |
C1 |
H1 |
109.5 |
109.4 |
| CT |
C1 |
H2 |
109.5 |
109.5 |
| CT |
C1 |
H3 |
109.5 |
109.5 |
| CT |
C2 |
H4 |
109.5 |
109.4 |
| CT |
C2 |
H5 |
109.5 |
109.5 |
| CT |
C2 |
H6 |
109.5 |
109.5 |
| O |
C |
OXT |
118.1 |
120.1 |
| O1 |
CX |
N |
141.8 |
119.9 |
| O2 |
CX |
N |
98.1 |
120.0 |
| CX |
N |
CA |
115.6 |
120.0 |
| CX |
N |
H10 |
122.2 |
119.9 |
| C |
OXT |
H21 |
109.5 |
117.0 |
| C |
CA |
CB |
110.1 |
109.4 |
| C |
CA |
H11 |
108.1 |
109.5 |
| N |
CA |
CB |
110.5 |
109.5 |
| CA |
N |
H10 |
122.2 |
120.0 |
| N |
CA |
H11 |
108.9 |
109.5 |
| CA |
CB |
CG |
116.3 |
109.5 |
| CB |
CA |
H11 |
108.0 |
109.5 |
| CA |
CB |
H12 |
107.7 |
109.4 |
| CA |
CB |
H13 |
107.7 |
109.5 |
| CB |
CG |
CD2 |
110.7 |
109.5 |
| CB |
CG |
CD1 |
110.7 |
109.5 |
| CG |
CB |
H12 |
107.7 |
109.4 |
| CG |
CB |
H13 |
107.8 |
109.5 |
| CB |
CG |
H14 |
108.1 |
109.5 |
| CD1 |
CG |
CD2 |
110.8 |
109.5 |
| CD2 |
CG |
H14 |
108.2 |
109.5 |
| CG |
CD2 |
H18 |
109.5 |
109.5 |
| CG |
CD2 |
H19 |
109.5 |
109.5 |
| CG |
CD2 |
H20 |
109.5 |
109.5 |
| CD1 |
CG |
H14 |
108.2 |
109.4 |
| CG |
CD1 |
H15 |
109.5 |
109.4 |
| CG |
CD1 |
H16 |
109.5 |
109.5 |
| CG |
CD1 |
H17 |
109.4 |
109.5 |
| H1 |
C1 |
H2 |
109.4 |
109.5 |
| H1 |
C1 |
H3 |
109.4 |
109.5 |
| H2 |
C1 |
H3 |
109.5 |
109.5 |
| H4 |
C2 |
H5 |
109.5 |
109.5 |
| H4 |
C2 |
H6 |
109.5 |
109.4 |
| H5 |
C2 |
H6 |
109.4 |
109.5 |
| H7 |
C3 |
H8 |
109.5 |
109.5 |
| H7 |
C3 |
H9 |
109.5 |
109.5 |
| H8 |
C3 |
H9 |
109.5 |
109.4 |
| H12 |
CB |
H13 |
109.4 |
109.5 |
| H15 |
CD1 |
H16 |
109.5 |
109.5 |
| H15 |
CD1 |
H17 |
109.5 |
109.5 |
| H16 |
CD1 |
H17 |
109.5 |
109.4 |
| H18 |
CD2 |
H19 |
109.5 |
109.5 |
| H18 |
CD2 |
H20 |
109.5 |
109.5 |
| H19 |
CD2 |
H20 |
109.5 |
109.4 |
Torsion Angles for BL2
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C3 |
CT |
C1 |
H1 |
180.0 |
180.0 |
| C3 |
CT |
C1 |
H2 |
300.0 |
300.0 |
| C3 |
CT |
C1 |
H3 |
60.0 |
60.0 |
| C3 |
CT |
C2 |
H4 |
180.0 |
180.0 |
| C3 |
CT |
C2 |
H5 |
300.0 |
300.0 |
| C3 |
CT |
C2 |
H6 |
60.0 |
60.0 |
| C1 |
CT |
C2 |
H4 |
65.6 |
60.0 |
| C1 |
CT |
C2 |
H5 |
185.6 |
180.0 |
| C1 |
CT |
C2 |
H6 |
305.6 |
300.0 |
| H1 |
C1 |
CT |
H2 |
240.0 |
240.0 |
| H1 |
C1 |
CT |
H3 |
120.0 |
120.0 |
| H2 |
C1 |
CT |
H3 |
240.0 |
240.0 |
| CT |
O2 |
CX |
N |
179.0 |
180.3 |
| C2 |
CT |
C1 |
H1 |
296.7 |
300.0 |
| C2 |
CT |
C1 |
H2 |
56.7 |
60.0 |
| C2 |
CT |
C1 |
H3 |
176.7 |
180.0 |
| H4 |
C2 |
CT |
H5 |
240.0 |
240.0 |
| H4 |
C2 |
CT |
H6 |
120.0 |
120.0 |
| H5 |
C2 |
CT |
H6 |
240.0 |
240.0 |
| O |
C |
OXT |
H21 |
360.0 |
0.0 |
| O |
C |
CA |
CB |
156.5 |
120.0 |
| O |
C |
CA |
H11 |
274.3 |
240.0 |
| O2 |
CX |
O1 |
N |
181.1 |
180.2 |
| O1 |
CX |
N |
CA |
9.2 |
359.9 |
| O1 |
CX |
N |
H10 |
189.2 |
180.0 |
| O1 |
CX |
O2 |
N |
179.3 |
179.8 |
| O2 |
CX |
N |
CA |
188.2 |
179.7 |
| O2 |
CX |
N |
H10 |
8.2 |
359.8 |
| CX |
N |
CA |
CB |
124.9 |
155.0 |
| CA |
N |
CX |
H10 |
180.0 |
179.9 |
| CX |
N |
CA |
H11 |
6.4 |
35.1 |
| OXT |
C |
CA |
CB |
336.4 |
300.0 |
| OXT |
C |
CA |
H11 |
94.2 |
60.0 |
| N |
CA |
C |
CB |
237.2 |
240.0 |
| C |
CA |
N |
H10 |
67.4 |
94.9 |
| N |
CA |
C |
H11 |
119.4 |
120.0 |
| C |
CA |
CB |
CG |
180.6 |
175.0 |
| CB |
CA |
C |
H11 |
242.2 |
240.0 |
| C |
CA |
CB |
H12 |
301.6 |
295.0 |
| C |
CA |
CB |
H13 |
59.6 |
55.0 |
| CX |
N |
CA |
H10 |
180.0 |
180.1 |
| C |
CA |
N |
CB |
122.5 |
120.0 |
| C |
CA |
N |
H11 |
241.1 |
239.9 |
| N |
CA |
CB |
CG |
303.8 |
295.0 |
| CB |
CA |
N |
H11 |
118.5 |
120.0 |
| N |
CA |
CB |
H12 |
64.8 |
55.0 |
| N |
CA |
CB |
H13 |
182.8 |
175.0 |
| C |
CA |
CB |
H11 |
117.8 |
120.0 |
| CB |
CA |
N |
H10 |
304.9 |
334.9 |
| N |
CA |
CB |
H11 |
241.0 |
240.0 |
| CA |
CB |
CG |
CD2 |
289.8 |
295.0 |
| CA |
CB |
CG |
CD1 |
166.5 |
175.0 |
| CG |
CB |
CA |
H12 |
239.0 |
240.1 |
| CG |
CB |
CA |
H13 |
121.0 |
120.0 |
| CA |
CB |
CG |
H14 |
48.1 |
55.0 |
| H12 |
CB |
CA |
H13 |
242.0 |
240.0 |
| CG |
CB |
CA |
H11 |
62.9 |
55.0 |
| CA |
CB |
CG |
H12 |
121.0 |
119.9 |
| CA |
CB |
CG |
H13 |
239.0 |
240.0 |
| CD1 |
CG |
CB |
CD2 |
236.7 |
240.0 |
| CD2 |
CG |
CB |
H14 |
241.7 |
240.0 |
| CB |
CG |
CD2 |
H18 |
180.0 |
300.0 |
| CB |
CG |
CD2 |
H19 |
300.0 |
60.0 |
| CB |
CG |
CD2 |
H20 |
60.0 |
180.0 |
| CD1 |
CG |
CB |
H14 |
118.4 |
120.0 |
| CB |
CG |
CD1 |
H15 |
180.0 |
60.0 |
| CB |
CG |
CD1 |
H16 |
300.0 |
180.0 |
| CB |
CG |
CD1 |
H17 |
60.0 |
300.0 |
| H12 |
CB |
CG |
H13 |
118.0 |
120.0 |
| CB |
CG |
CD2 |
CD1 |
236.7 |
240.0 |
| CD2 |
CG |
CB |
H12 |
168.8 |
175.0 |
| CD2 |
CG |
CB |
H13 |
50.8 |
55.0 |
| CB |
CG |
CD2 |
H14 |
118.3 |
120.0 |
| CD1 |
CG |
CD2 |
H14 |
241.5 |
240.0 |
| CD2 |
CG |
CD1 |
H15 |
56.7 |
300.0 |
| CD2 |
CG |
CD1 |
H16 |
176.8 |
60.0 |
| CD2 |
CG |
CD1 |
H17 |
296.8 |
180.0 |
| H18 |
CD2 |
CG |
H19 |
240.0 |
240.0 |
| H18 |
CD2 |
CG |
H20 |
120.0 |
120.0 |
| H19 |
CD2 |
CG |
H20 |
240.0 |
240.0 |
| CB |
CG |
CD1 |
CD2 |
123.2 |
120.0 |
| CD1 |
CG |
CB |
H12 |
45.5 |
55.0 |
| CD1 |
CG |
CB |
H13 |
287.5 |
295.0 |
| CB |
CG |
CD1 |
H14 |
241.7 |
240.0 |
| CD2 |
CG |
CD1 |
H14 |
118.5 |
120.0 |
| CD1 |
CG |
CD2 |
H18 |
303.3 |
60.0 |
| CD1 |
CG |
CD2 |
H19 |
63.3 |
180.0 |
| CD1 |
CG |
CD2 |
H20 |
183.3 |
300.0 |
| H15 |
CD1 |
CG |
H16 |
240.0 |
239.9 |
| H15 |
CD1 |
CG |
H17 |
120.0 |
120.0 |
| H16 |
CD1 |
CG |
H17 |
240.0 |
240.0 |
| H1 |
C1 |
CT |
C2 |
296.7 |
300.0 |
| CT |
C1 |
H1 |
H2 |
120.0 |
120.0 |
| CT |
C1 |
H1 |
H3 |
240.0 |
240.0 |
| H2 |
C1 |
H1 |
H3 |
120.0 |
120.0 |
| H2 |
C1 |
CT |
C2 |
56.7 |
60.0 |
| CT |
C1 |
H2 |
H1 |
240.0 |
240.0 |
| CT |
C1 |
H2 |
H3 |
120.0 |
120.0 |
| H1 |
C1 |
H2 |
H3 |
240.0 |
240.0 |
| H3 |
C1 |
CT |
C2 |
176.7 |
180.0 |
| CT |
C1 |
H3 |
H1 |
120.0 |
120.0 |
| CT |
C1 |
H3 |
H2 |
240.0 |
240.0 |
| H1 |
C1 |
H3 |
H2 |
120.0 |
120.0 |
| CT |
C2 |
H4 |
H5 |
120.0 |
120.0 |
| CT |
C2 |
H4 |
H6 |
240.0 |
240.0 |
| H5 |
C2 |
H4 |
H6 |
119.9 |
120.0 |
| CT |
C2 |
H5 |
H4 |
240.0 |
240.0 |
| CT |
C2 |
H5 |
H6 |
120.0 |
120.1 |
| H4 |
C2 |
H5 |
H6 |
240.0 |
240.0 |
| CT |
C2 |
H6 |
H4 |
120.0 |
120.0 |
| CT |
C2 |
H6 |
H5 |
240.0 |
239.9 |
| H4 |
C2 |
H6 |
H5 |
120.0 |
120.0 |
| H8 |
C3 |
H7 |
H9 |
120.0 |
119.9 |
| H7 |
C3 |
H8 |
H9 |
240.0 |
240.0 |
| H7 |
C3 |
H9 |
H8 |
120.0 |
120.0 |
| CX |
N |
H10 |
CA |
180.0 |
179.9 |
| H10 |
N |
CA |
CB |
304.9 |
334.9 |
| H10 |
N |
CA |
H11 |
186.4 |
215.0 |
| C |
CA |
H11 |
CB |
240.9 |
240.0 |
| N |
CA |
H11 |
CB |
120.1 |
120.0 |
| H11 |
CA |
N |
H10 |
186.4 |
215.0 |
| H11 |
CA |
CB |
CG |
62.9 |
55.0 |
| H11 |
CA |
CB |
H12 |
183.9 |
175.0 |
| H11 |
CA |
CB |
H13 |
301.8 |
295.0 |
| CA |
CB |
H12 |
CG |
233.8 |
240.0 |
| H12 |
CB |
CA |
H11 |
183.9 |
175.0 |
| CA |
CB |
H12 |
H13 |
116.9 |
120.0 |
| H12 |
CB |
CG |
CD2 |
168.8 |
175.0 |
| H12 |
CB |
CG |
CD1 |
45.5 |
55.0 |
| CG |
CB |
H12 |
H13 |
243.1 |
240.0 |
| H12 |
CB |
CG |
H14 |
287.1 |
295.0 |
| CA |
CB |
H13 |
CG |
126.2 |
120.0 |
| H13 |
CB |
CA |
H11 |
301.8 |
295.0 |
| CA |
CB |
H13 |
H12 |
243.1 |
240.0 |
| H13 |
CB |
CG |
CD2 |
50.8 |
55.0 |
| H13 |
CB |
CG |
CD1 |
287.5 |
295.0 |
| CG |
CB |
H13 |
H12 |
116.9 |
120.0 |
| H13 |
CB |
CG |
H14 |
169.1 |
175.0 |
| CB |
CG |
H14 |
CD2 |
240.1 |
240.0 |
| CB |
CG |
H14 |
CD1 |
120.0 |
120.0 |
| H14 |
CG |
CB |
H12 |
287.1 |
295.0 |
| H14 |
CG |
CB |
H13 |
169.1 |
175.0 |
| CD1 |
CG |
H14 |
CD2 |
120.1 |
120.0 |
| H14 |
CG |
CD2 |
H18 |
61.8 |
180.0 |
| H14 |
CG |
CD2 |
H19 |
181.8 |
300.0 |
| H14 |
CG |
CD2 |
H20 |
301.7 |
60.0 |
| H14 |
CG |
CD1 |
H15 |
298.3 |
180.0 |
| H14 |
CG |
CD1 |
H16 |
58.3 |
300.1 |
| H14 |
CG |
CD1 |
H17 |
178.3 |
60.0 |
| H15 |
CD1 |
CG |
CD2 |
56.7 |
300.0 |
| H15 |
CD1 |
CG |
H14 |
298.3 |
180.0 |
| CG |
CD1 |
H15 |
H16 |
120.0 |
120.1 |
| CG |
CD1 |
H15 |
H17 |
240.0 |
240.0 |
| H16 |
CD1 |
H15 |
H17 |
120.0 |
120.0 |
| H16 |
CD1 |
CG |
CD2 |
176.8 |
60.0 |
| H16 |
CD1 |
CG |
H14 |
58.3 |
300.1 |
| CG |
CD1 |
H16 |
H15 |
240.0 |
240.0 |
| CG |
CD1 |
H16 |
H17 |
120.0 |
120.0 |
| H15 |
CD1 |
H16 |
H17 |
240.0 |
240.0 |
| H17 |
CD1 |
CG |
CD2 |
296.8 |
180.0 |
| H17 |
CD1 |
CG |
H14 |
178.3 |
60.0 |
| CG |
CD1 |
H17 |
H15 |
120.0 |
120.0 |
| CG |
CD1 |
H17 |
H16 |
240.0 |
240.0 |
| H15 |
CD1 |
H17 |
H16 |
120.0 |
120.0 |
| H18 |
CD2 |
CG |
H14 |
61.8 |
180.0 |
| CG |
CD2 |
H18 |
H19 |
120.0 |
120.0 |
| CG |
CD2 |
H18 |
H20 |
240.0 |
240.0 |
| H19 |
CD2 |
H18 |
H20 |
120.0 |
120.0 |
| H19 |
CD2 |
CG |
H14 |
181.8 |
300.0 |
| CG |
CD2 |
H19 |
H18 |
240.0 |
240.0 |
| CG |
CD2 |
H19 |
H20 |
120.0 |
120.0 |
| H18 |
CD2 |
H19 |
H20 |
240.0 |
240.0 |
| H20 |
CD2 |
CG |
H14 |
301.7 |
60.0 |
| CG |
CD2 |
H20 |
H18 |
120.0 |
120.0 |
| CG |
CD2 |
H20 |
H19 |
240.0 |
240.0 |
| H18 |
CD2 |
H20 |
H19 |
120.0 |
120.0 |