PDB Chemical Component BK5
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for BK5
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C6 |
1.345 |
1.329 |
| C2 |
N1 |
1.333 |
1.321 |
| N3 |
C2 |
1.327 |
1.315 |
| N3 |
C4 |
1.347 |
1.333 |
| C4 |
NAZ |
1.330 |
1.363 |
| C4 |
C5 |
1.387 |
1.407 |
| C5 |
C6 |
1.406 |
1.404 |
| C5 |
CAT |
1.406 |
1.463 |
| C6 |
NAD |
1.334 |
1.381 |
| CAC |
CAY |
1.533 |
1.530 |
| CAF |
CAH |
1.394 |
1.358 |
| CAF |
CAR |
1.397 |
1.405 |
| CAG |
CAE |
1.396 |
1.359 |
| CAH |
CAU |
1.389 |
1.408 |
| CAJ |
CAQ |
1.391 |
1.366 |
| CAK |
CAV |
1.401 |
1.403 |
| CAL |
CAA |
1.537 |
1.531 |
| CAL |
OAP |
1.451 |
1.429 |
| NAO |
CAT |
1.342 |
1.312 |
| CAQ |
CAE |
1.397 |
1.399 |
| CAQ |
OAP |
1.361 |
1.359 |
| CAR |
CAK |
1.397 |
1.384 |
| CAT |
CAR |
1.397 |
1.482 |
| CAU |
CAJ |
1.397 |
1.404 |
| CAU |
CAV |
1.396 |
1.417 |
| CAV |
CAG |
1.389 |
1.408 |
| CAY |
CAB |
1.531 |
1.530 |
| CAY |
NAZ |
1.476 |
1.465 |
| NAZ |
NAO |
1.241 |
1.398 |
| C2 |
H2 |
1.080 |
1.080 |
| CAA |
HAA |
1.100 |
1.089 |
| CAA |
HAAA |
1.100 |
1.090 |
| CAA |
HAAB |
1.100 |
1.090 |
| CAB |
HAB |
1.100 |
1.090 |
| CAB |
HABA |
1.100 |
1.091 |
| CAB |
HABB |
1.100 |
1.090 |
| CAC |
HAC |
1.100 |
1.090 |
| CAC |
HACA |
1.100 |
1.090 |
| CAC |
HACB |
1.100 |
1.091 |
| NAD |
HNAD |
1.000 |
0.970 |
| NAD |
HNAA |
1.000 |
0.970 |
| CAE |
HAE |
1.080 |
1.080 |
| CAF |
HAF |
1.080 |
1.080 |
| CAG |
HAG |
1.080 |
1.079 |
| CAH |
HAH |
1.080 |
1.079 |
| CAJ |
HAJ |
1.080 |
1.080 |
| CAK |
HAK |
1.081 |
1.079 |
| CAL |
HAL |
1.100 |
1.090 |
| CAL |
HALA |
1.100 |
1.090 |
| CAY |
HAY |
1.100 |
1.090 |
Bond Angles for BK5
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C6 |
121.4 |
121.1 |
| N1 |
C6 |
C5 |
118.9 |
118.3 |
| N1 |
C6 |
NAD |
118.0 |
120.8 |
| N3 |
C2 |
H2 |
119.4 |
118.6 |
| N3 |
C4 |
NAZ |
132.7 |
134.5 |
| N3 |
C4 |
C5 |
120.4 |
118.6 |
| C5 |
C4 |
NAZ |
106.9 |
106.9 |
| C4 |
NAZ |
CAY |
122.4 |
125.3 |
| C4 |
NAZ |
NAO |
112.5 |
109.4 |
| C4 |
C5 |
C6 |
117.6 |
118.6 |
| C4 |
C5 |
CAT |
103.7 |
106.4 |
| C6 |
C5 |
CAT |
138.7 |
135.0 |
| C5 |
C6 |
NAD |
123.1 |
120.8 |
| C5 |
CAT |
NAO |
107.4 |
107.4 |
| C5 |
CAT |
CAR |
127.0 |
126.3 |
| C6 |
NAD |
HNAD |
109.5 |
120.0 |
| C6 |
NAD |
HNAA |
109.5 |
120.1 |
| CAC |
CAY |
NAZ |
108.7 |
109.5 |
| CAY |
CAC |
HAC |
109.5 |
109.5 |
| CAY |
CAC |
HACA |
109.5 |
109.5 |
| CAY |
CAC |
HACB |
109.5 |
109.5 |
| CAC |
CAY |
HAY |
109.5 |
109.5 |
| CAH |
CAF |
CAR |
121.0 |
120.9 |
| CAF |
CAH |
CAU |
120.1 |
119.9 |
| CAH |
CAF |
HAF |
119.5 |
119.5 |
| CAF |
CAH |
HAH |
119.9 |
120.0 |
| CAF |
CAR |
CAK |
118.6 |
120.5 |
| CAR |
CAF |
HAF |
119.5 |
119.6 |
| CAG |
CAE |
HAE |
120.0 |
119.5 |
| CAH |
CAU |
CAJ |
120.0 |
121.0 |
| CAH |
CAU |
CAV |
119.6 |
119.6 |
| CAU |
CAH |
HAH |
120.0 |
120.0 |
| CAJ |
CAQ |
OAP |
121.6 |
119.6 |
| CAQ |
CAJ |
HAJ |
120.0 |
120.1 |
| CAR |
CAK |
CAV |
120.6 |
119.4 |
| CAK |
CAV |
CAU |
120.1 |
119.5 |
| CAV |
CAK |
HAK |
119.7 |
120.3 |
| CAL |
CAA |
HAA |
109.5 |
109.5 |
| CAL |
CAA |
HAAA |
109.4 |
109.5 |
| CAL |
CAA |
HAAB |
109.5 |
109.5 |
| OAP |
CAL |
HAL |
109.1 |
109.5 |
| OAP |
CAL |
HALA |
109.2 |
109.5 |
| NAO |
CAT |
CAR |
125.6 |
126.4 |
| CAQ |
CAE |
HAE |
120.0 |
119.6 |
| CAR |
CAK |
HAK |
119.7 |
120.3 |
| CAU |
CAJ |
HAJ |
120.0 |
120.2 |
| CAV |
CAG |
HAG |
119.7 |
120.1 |
| CAY |
CAB |
HAB |
109.5 |
109.5 |
| CAY |
CAB |
HABA |
109.5 |
109.5 |
| CAY |
CAB |
HABB |
109.5 |
109.5 |
| NAZ |
CAY |
HAY |
109.4 |
109.5 |
| HAA |
CAA |
HAAA |
109.5 |
109.4 |
| HAA |
CAA |
HAAB |
109.5 |
109.5 |
| HAAA |
CAA |
HAAB |
109.5 |
109.5 |
| HAB |
CAB |
HABA |
109.5 |
109.5 |
| HAB |
CAB |
HABB |
109.4 |
109.5 |
| HABA |
CAB |
HABB |
109.5 |
109.4 |
| HAC |
CAC |
HACA |
109.5 |
109.4 |
| HAC |
CAC |
HACB |
109.4 |
109.4 |
| HACA |
CAC |
HACB |
109.5 |
109.5 |
| HNAD |
NAD |
HNAA |
109.4 |
119.9 |
| HAL |
CAL |
HALA |
109.8 |
109.5 |
Torsion Angles for BK5
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C4 |
C5 |
C6 |
N1 |
359.5 |
359.9 |
| N1 |
C6 |
C5 |
CAT |
180.4 |
180.0 |
| C5 |
C6 |
N1 |
NAD |
180.8 |
180.0 |
| N1 |
C6 |
NAD |
HNAD |
0.0 |
16.8 |
| N1 |
C6 |
NAD |
HNAA |
120.0 |
196.8 |
| C2 |
N1 |
C6 |
C5 |
0.7 |
0.1 |
| C2 |
N1 |
C6 |
NAD |
180.0 |
180.0 |
| N3 |
C2 |
N1 |
C6 |
359.9 |
360.0 |
| C4 |
N3 |
C2 |
H2 |
179.3 |
180.0 |
| C5 |
C4 |
N3 |
NAZ |
180.8 |
180.0 |
| N3 |
C4 |
NAZ |
CAY |
0.8 |
0.0 |
| N3 |
C4 |
NAZ |
NAO |
181.2 |
180.0 |
| N3 |
C4 |
C5 |
C6 |
359.6 |
0.0 |
| N3 |
C4 |
C5 |
CAT |
179.0 |
180.0 |
| N3 |
C4 |
NAZ |
C5 |
180.7 |
180.0 |
| NAZ |
C4 |
C5 |
C6 |
180.2 |
180.0 |
| NAZ |
C4 |
C5 |
CAT |
359.6 |
360.0 |
| CAC |
CAY |
NAZ |
C4 |
87.7 |
240.0 |
| C4 |
NAZ |
CAY |
HAY |
328.1 |
360.0 |
| N1 |
C6 |
C5 |
C4 |
359.5 |
359.9 |
| N3 |
C4 |
C5 |
NAZ |
179.4 |
180.0 |
| C5 |
C4 |
NAZ |
CAY |
180.1 |
180.0 |
| C5 |
C4 |
NAZ |
NAO |
0.4 |
0.0 |
| C6 |
C5 |
C4 |
CAT |
180.6 |
180.0 |
| C4 |
C5 |
C6 |
NAD |
180.3 |
180.0 |
| C4 |
C5 |
CAT |
NAO |
0.2 |
0.0 |
| C4 |
C5 |
CAT |
CAR |
179.9 |
180.0 |
| N1 |
C6 |
C5 |
NAD |
179.2 |
180.0 |
| C6 |
C5 |
C4 |
NAZ |
180.2 |
180.0 |
| C4 |
C5 |
C6 |
CAT |
179.1 |
180.0 |
| C6 |
C5 |
CAT |
NAO |
179.4 |
180.0 |
| C6 |
C5 |
CAT |
CAR |
359.1 |
359.9 |
| C5 |
C6 |
NAD |
HNAD |
179.2 |
196.7 |
| C5 |
C6 |
NAD |
HNAA |
299.2 |
16.8 |
| CAT |
C5 |
C4 |
NAZ |
359.6 |
360.0 |
| C4 |
C5 |
CAT |
C6 |
180.8 |
180.0 |
| CAT |
C5 |
C6 |
NAD |
1.2 |
0.0 |
| NAO |
CAT |
C5 |
CAR |
180.3 |
180.0 |
| N1 |
C6 |
NAD |
C5 |
180.8 |
180.0 |
| NAD |
C6 |
C5 |
CAT |
1.2 |
0.0 |
| HNAD |
NAD |
C6 |
HNAA |
240.0 |
180.0 |
| C4 |
NAZ |
CAY |
CAC |
87.7 |
240.0 |
| CAC |
CAY |
CAB |
HAB |
180.0 |
60.0 |
| CAC |
CAY |
CAB |
HABA |
300.0 |
180.0 |
| CAC |
CAY |
CAB |
HABB |
60.0 |
299.9 |
| NAZ |
CAY |
CAC |
HAY |
240.4 |
120.0 |
| HAC |
CAC |
CAY |
HACA |
240.0 |
240.0 |
| HAC |
CAC |
CAY |
HACB |
120.0 |
120.0 |
| HACA |
CAC |
CAY |
HACB |
240.0 |
240.0 |
| CAH |
CAF |
CAR |
CAK |
358.1 |
360.0 |
| CAR |
CAF |
CAH |
HAF |
180.0 |
180.1 |
| CAF |
CAH |
CAU |
CAJ |
180.0 |
180.2 |
| CAF |
CAH |
CAU |
CAV |
0.5 |
359.9 |
| CAU |
CAH |
CAF |
HAH |
180.0 |
180.2 |
| C5 |
CAT |
CAR |
CAF |
229.3 |
44.7 |
| CAR |
CAF |
CAH |
CAU |
1.0 |
0.1 |
| CAH |
CAF |
CAR |
HAF |
180.0 |
179.9 |
| CAR |
CAF |
CAH |
HAH |
181.0 |
179.9 |
| CAF |
CAR |
CAK |
CAV |
1.3 |
360.0 |
| NAO |
CAT |
CAR |
CAF |
48.9 |
224.7 |
| CAF |
CAR |
CAK |
HAK |
181.3 |
180.0 |
| CAQ |
CAE |
CAG |
HAE |
180.0 |
180.1 |
| CAU |
CAH |
CAF |
CAR |
1.0 |
0.1 |
| CAU |
CAH |
CAF |
HAF |
181.0 |
180.0 |
| CAF |
CAH |
CAU |
HAH |
180.0 |
179.8 |
| CAK |
CAV |
CAU |
CAH |
359.0 |
0.1 |
| CAH |
CAU |
CAJ |
HAJ |
359.7 |
359.9 |
| CAH |
CAU |
CAJ |
CAQ |
179.7 |
180.0 |
| CAJ |
CAQ |
CAE |
HAE |
179.5 |
180.0 |
| CAU |
CAJ |
CAQ |
HAJ |
180.0 |
180.0 |
| CAH |
CAU |
CAV |
CAK |
359.0 |
0.1 |
| CAR |
CAK |
CAV |
HAK |
180.0 |
180.0 |
| CAK |
CAV |
CAG |
HAG |
0.9 |
0.0 |
| HAA |
CAA |
CAL |
HAAA |
240.0 |
240.0 |
| HAA |
CAA |
CAL |
HAAB |
120.0 |
120.0 |
| HAAA |
CAA |
CAL |
HAAB |
240.0 |
240.0 |
| CAJ |
CAQ |
OAP |
CAL |
29.6 |
180.0 |
| OAP |
CAL |
CAA |
HAA |
180.0 |
180.0 |
| OAP |
CAL |
CAA |
HAAA |
300.0 |
300.0 |
| OAP |
CAL |
CAA |
HAAB |
60.0 |
60.0 |
| HAL |
CAL |
OAP |
HALA |
120.0 |
120.0 |
| C4 |
NAZ |
NAO |
CAT |
359.7 |
360.0 |
| C5 |
CAT |
NAO |
CAR |
179.7 |
180.0 |
| CAG |
CAE |
CAQ |
HAE |
180.0 |
179.9 |
| OAP |
CAQ |
CAJ |
HAJ |
359.7 |
0.0 |
| CAQ |
OAP |
CAL |
HAL |
53.0 |
60.0 |
| CAQ |
OAP |
CAL |
HALA |
293.0 |
300.0 |
| OAP |
CAQ |
CAE |
HAE |
0.7 |
359.9 |
| C5 |
CAT |
CAR |
CAK |
52.1 |
224.7 |
| CAK |
CAR |
CAF |
HAF |
178.1 |
180.0 |
| CAR |
CAK |
CAV |
CAU |
0.1 |
0.0 |
| CAV |
CAK |
CAR |
HAK |
180.0 |
180.0 |
| C5 |
CAT |
CAR |
NAO |
180.4 |
180.0 |
| CAT |
CAR |
CAF |
HAF |
0.7 |
0.0 |
| CAT |
CAR |
CAK |
CAV |
178.6 |
180.0 |
| CAT |
CAR |
CAK |
HAK |
358.6 |
360.0 |
| CAH |
CAU |
CAJ |
CAV |
180.5 |
179.7 |
| CAJ |
CAU |
CAH |
HAH |
360.0 |
0.4 |
| CAQ |
CAJ |
CAU |
HAJ |
180.0 |
180.0 |
| CAH |
CAU |
CAV |
CAJ |
179.5 |
180.3 |
| CAV |
CAU |
CAH |
HAH |
180.4 |
180.0 |
| CAU |
CAV |
CAK |
HAK |
180.1 |
180.0 |
| CAV |
CAU |
CAJ |
HAJ |
179.2 |
180.2 |
| CAU |
CAV |
CAG |
HAG |
180.0 |
180.0 |
| CAV |
CAG |
CAE |
HAE |
180.0 |
180.0 |
| C4 |
NAZ |
CAY |
CAB |
209.9 |
120.0 |
| HAB |
CAB |
CAY |
HABA |
240.0 |
240.0 |
| HAB |
CAB |
CAY |
HABB |
120.0 |
120.1 |
| HABA |
CAB |
CAY |
HABB |
240.0 |
240.1 |
| C4 |
NAZ |
CAY |
NAO |
180.4 |
180.0 |
| NAZ |
CAY |
CAC |
HAC |
302.3 |
60.0 |
| NAZ |
CAY |
CAC |
HACA |
62.3 |
180.0 |
| NAZ |
CAY |
CAC |
HACB |
182.3 |
300.0 |
| CAC |
CAY |
NAZ |
HAY |
119.6 |
240.0 |
| NAZ |
CAY |
CAB |
HAB |
59.0 |
180.0 |
| NAZ |
CAY |
CAB |
HABA |
179.0 |
300.0 |
| NAZ |
CAY |
CAB |
HABB |
299.0 |
59.9 |
| C4 |
NAZ |
NAO |
CAY |
179.6 |
180.0 |
| CAC |
CAY |
NAZ |
NAO |
267.2 |
60.0 |
| H2 |
C2 |
N1 |
C6 |
179.9 |
179.9 |
| CAL |
CAA |
HAA |
HAAA |
120.0 |
120.0 |
| CAL |
CAA |
HAA |
HAAB |
240.0 |
240.0 |
| HAAA |
CAA |
HAA |
HAAB |
120.0 |
120.0 |
| CAL |
CAA |
HAAA |
HAA |
239.9 |
240.0 |
| CAL |
CAA |
HAAA |
HAAB |
120.0 |
120.0 |
| HAA |
CAA |
HAAA |
HAAB |
240.0 |
240.0 |
| CAL |
CAA |
HAAB |
HAA |
120.0 |
120.0 |
| CAL |
CAA |
HAAB |
HAAA |
240.0 |
240.0 |
| HAA |
CAA |
HAAB |
HAAA |
120.0 |
120.0 |
| CAY |
CAB |
HAB |
HABA |
120.0 |
120.0 |
| CAY |
CAB |
HAB |
HABB |
240.0 |
239.9 |
| HABA |
CAB |
HAB |
HABB |
120.0 |
119.9 |
| CAY |
CAB |
HABA |
HAB |
239.9 |
240.0 |
| CAY |
CAB |
HABA |
HABB |
120.0 |
120.0 |
| HAB |
CAB |
HABA |
HABB |
240.0 |
240.0 |
| CAY |
CAB |
HABB |
HAB |
120.0 |
120.1 |
| CAY |
CAB |
HABB |
HABA |
240.0 |
240.0 |
| HAB |
CAB |
HABB |
HABA |
120.0 |
120.0 |
| HAC |
CAC |
CAY |
NAZ |
302.3 |
60.0 |
| CAY |
CAC |
HAC |
HACA |
120.0 |
120.0 |
| CAY |
CAC |
HAC |
HACB |
240.0 |
240.0 |
| HAC |
CAC |
CAY |
HAY |
61.9 |
300.0 |
| HACA |
CAC |
HAC |
HACB |
120.0 |
119.9 |
| HACA |
CAC |
CAY |
NAZ |
62.3 |
180.0 |
| CAY |
CAC |
HACA |
HAC |
240.0 |
240.0 |
| CAY |
CAC |
HACA |
HACB |
120.0 |
120.0 |
| HACA |
CAC |
CAY |
HAY |
181.9 |
60.0 |
| HAC |
CAC |
HACA |
HACB |
240.0 |
240.1 |
| HACB |
CAC |
CAY |
NAZ |
182.3 |
300.0 |
| CAY |
CAC |
HACB |
HAC |
120.0 |
120.0 |
| CAY |
CAC |
HACB |
HACA |
240.0 |
240.0 |
| HACB |
CAC |
CAY |
HAY |
301.9 |
180.0 |
| HAC |
CAC |
HACB |
HACA |
120.0 |
119.9 |
| C6 |
NAD |
HNAD |
HNAA |
120.0 |
180.0 |
| C6 |
NAD |
HNAA |
HNAD |
240.0 |
180.0 |
| CAH |
CAF |
HAF |
CAR |
180.0 |
180.1 |
| HAF |
CAF |
CAH |
CAU |
181.0 |
180.0 |
| HAF |
CAF |
CAH |
HAH |
1.0 |
359.9 |
| HAF |
CAF |
CAR |
CAK |
178.1 |
180.0 |
| HAG |
CAG |
CAE |
HAE |
0.1 |
0.0 |
| HAH |
CAH |
CAF |
CAR |
181.0 |
179.9 |
| CAF |
CAH |
HAH |
CAU |
180.0 |
180.2 |
| HAH |
CAH |
CAF |
HAF |
1.0 |
359.9 |
| HAH |
CAH |
CAU |
CAJ |
360.0 |
0.4 |
| HAH |
CAH |
CAU |
CAV |
180.4 |
180.0 |
| HAJ |
CAJ |
CAQ |
OAP |
359.7 |
0.0 |
| CAR |
CAK |
HAK |
CAV |
180.0 |
180.0 |
| HAK |
CAK |
CAV |
CAU |
180.1 |
180.0 |
| HAL |
CAL |
CAA |
HAA |
300.0 |
300.0 |
| HAL |
CAL |
CAA |
HAAA |
60.0 |
60.0 |
| HAL |
CAL |
CAA |
HAAB |
180.0 |
180.0 |
| OAP |
CAL |
HAL |
HALA |
240.4 |
240.0 |
| HALA |
CAL |
CAA |
HAA |
60.0 |
60.0 |
| HALA |
CAL |
CAA |
HAAA |
180.0 |
180.0 |
| HALA |
CAL |
CAA |
HAAB |
300.0 |
300.0 |
| OAP |
CAL |
HALA |
HAL |
119.6 |
120.0 |
| CAC |
CAY |
HAY |
NAZ |
240.9 |
120.0 |
| HAY |
CAY |
CAC |
HAC |
61.9 |
300.0 |
| HAY |
CAY |
CAC |
HACA |
181.9 |
60.0 |
| HAY |
CAY |
CAC |
HACB |
301.9 |
180.0 |
| HAY |
CAY |
CAB |
HAB |
299.5 |
300.0 |
| HAY |
CAY |
CAB |
HABA |
59.5 |
60.0 |
| HAY |
CAY |
CAB |
HABB |
179.5 |
179.9 |