PDB Chemical Component BJM
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for BJM
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C16 |
C9 |
1.583 |
1.531 |
| C16 |
C10 |
1.572 |
1.530 |
| C9 |
C13 |
1.533 |
1.530 |
| C9 |
C4 |
1.552 |
1.529 |
| C10 |
C14 |
1.586 |
1.530 |
| C10 |
C5 |
1.593 |
1.530 |
| C13 |
C8 |
1.545 |
1.529 |
| C14 |
C8 |
1.584 |
1.530 |
| C8 |
O15 |
1.401 |
1.429 |
| C8 |
C3 |
1.537 |
1.531 |
| C4 |
C1 |
1.553 |
1.531 |
| C5 |
C1 |
1.565 |
1.530 |
| C1 |
C3 |
1.563 |
1.530 |
| C1 |
C2 |
1.563 |
1.530 |
| N7 |
C2 |
1.456 |
1.470 |
| C2 |
C6 |
1.551 |
1.507 |
| O12 |
C6 |
1.229 |
1.213 |
| C6 |
N11 |
1.342 |
1.348 |
| N23 |
C22 |
1.367 |
1.279 |
| N11 |
C17 |
1.508 |
1.475 |
| N11 |
C18 |
1.489 |
1.492 |
| C17 |
C20 |
1.502 |
1.570 |
| C17 |
C19 |
1.469 |
1.541 |
| C20 |
C19 |
1.492 |
1.530 |
| C22 |
C18 |
1.568 |
1.507 |
| C18 |
C21 |
1.477 |
1.550 |
| C19 |
C21 |
1.518 |
1.546 |
| C2 |
H1 |
1.100 |
1.090 |
| C3 |
H2 |
1.100 |
1.090 |
| C3 |
H3 |
1.100 |
1.090 |
| C9 |
H4 |
1.100 |
1.090 |
| C10 |
H5 |
1.101 |
1.090 |
| C13 |
H6 |
1.100 |
1.090 |
| C13 |
H7 |
1.100 |
1.090 |
| C14 |
H8 |
1.100 |
1.091 |
| C14 |
H9 |
1.100 |
1.090 |
| C16 |
H10 |
1.100 |
1.090 |
| C16 |
H11 |
1.100 |
1.089 |
| C19 |
H12 |
1.100 |
1.090 |
| C20 |
H13 |
1.100 |
1.090 |
| C20 |
H14 |
1.100 |
1.091 |
| C21 |
H15 |
1.100 |
1.090 |
| C21 |
H16 |
1.101 |
1.090 |
| C22 |
H17 |
1.080 |
1.080 |
| N23 |
H19 |
0.999 |
0.971 |
| C4 |
H22 |
1.100 |
1.090 |
| C4 |
H23 |
1.100 |
1.090 |
| C5 |
H24 |
1.100 |
1.090 |
| C5 |
H25 |
1.100 |
1.090 |
| N7 |
H26 |
1.000 |
1.009 |
| N7 |
H27 |
1.001 |
1.009 |
| O15 |
H29 |
0.950 |
0.968 |
| C17 |
H30 |
1.100 |
1.090 |
| C18 |
H31 |
1.099 |
1.089 |
Bond Angles for BJM
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C16 |
C9 |
C4 |
112.2 |
109.5 |
| C16 |
C9 |
H4 |
109.5 |
109.4 |
| C16 |
C10 |
C5 |
105.8 |
109.4 |
| C16 |
C10 |
H5 |
111.1 |
109.5 |
| C13 |
C9 |
C4 |
103.9 |
109.5 |
| C13 |
C9 |
H4 |
110.2 |
109.5 |
| C9 |
C13 |
H6 |
109.0 |
109.5 |
| C9 |
C13 |
H7 |
109.0 |
109.5 |
| C4 |
C9 |
H4 |
109.9 |
109.5 |
| C9 |
C4 |
H22 |
108.9 |
109.5 |
| C9 |
C4 |
H23 |
108.8 |
109.5 |
| C14 |
C10 |
C5 |
111.1 |
109.4 |
| C14 |
C10 |
H5 |
110.9 |
109.5 |
| C10 |
C14 |
H8 |
109.4 |
109.5 |
| C10 |
C14 |
H9 |
109.4 |
109.5 |
| C5 |
C10 |
H5 |
110.8 |
109.5 |
| C10 |
C5 |
H24 |
108.7 |
109.5 |
| C10 |
C5 |
H25 |
108.7 |
109.5 |
| C13 |
C8 |
O15 |
103.0 |
109.5 |
| C14 |
C8 |
O15 |
119.6 |
109.5 |
| C8 |
O15 |
H29 |
109.5 |
113.9 |
| C8 |
C3 |
H2 |
109.0 |
109.4 |
| C8 |
C3 |
H3 |
109.0 |
109.4 |
| C2 |
C1 |
C3 |
106.6 |
109.4 |
| C1 |
C3 |
H2 |
108.9 |
109.5 |
| C1 |
C3 |
H3 |
108.9 |
109.5 |
| C1 |
C2 |
C6 |
111.8 |
109.5 |
| C1 |
C2 |
H1 |
108.0 |
109.5 |
| N7 |
C2 |
H1 |
109.3 |
109.5 |
| C2 |
C6 |
N11 |
116.9 |
120.0 |
| C6 |
C2 |
H1 |
108.1 |
109.5 |
| C6 |
N11 |
C17 |
131.4 |
127.0 |
| C6 |
N11 |
C18 |
119.1 |
127.6 |
| N23 |
C22 |
C18 |
115.6 |
120.0 |
| N23 |
C22 |
H17 |
122.2 |
120.0 |
| C17 |
N11 |
C18 |
108.1 |
105.4 |
| N11 |
C17 |
H30 |
123.2 |
117.4 |
| C22 |
C18 |
N11 |
113.7 |
110.7 |
| N11 |
C18 |
H31 |
107.4 |
110.7 |
| C17 |
C20 |
H13 |
120.2 |
118.4 |
| C17 |
C20 |
H14 |
120.2 |
116.9 |
| C17 |
C19 |
H12 |
117.0 |
121.8 |
| C20 |
C19 |
C21 |
122.6 |
118.2 |
| C20 |
C19 |
H12 |
116.5 |
119.5 |
| C18 |
C22 |
H17 |
122.2 |
120.0 |
| C22 |
C18 |
H31 |
106.5 |
110.6 |
| C18 |
C21 |
H15 |
111.4 |
110.8 |
| C18 |
C21 |
H16 |
111.4 |
110.9 |
| C21 |
C19 |
H12 |
116.0 |
117.6 |
| C19 |
C21 |
H15 |
111.4 |
110.7 |
| C19 |
C21 |
H16 |
111.4 |
110.7 |
| H2 |
C3 |
H3 |
109.5 |
109.5 |
| H6 |
C13 |
H7 |
109.5 |
109.4 |
| H8 |
C14 |
H9 |
109.5 |
109.5 |
| H10 |
C16 |
H11 |
109.5 |
109.5 |
| H13 |
C20 |
H14 |
109.4 |
115.5 |
| H15 |
C21 |
H16 |
109.5 |
110.6 |
| H22 |
C4 |
H23 |
109.5 |
109.4 |
| H24 |
C5 |
H25 |
109.5 |
109.4 |
| H26 |
N7 |
H27 |
109.5 |
111.0 |
Torsion Angles for BJM
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C13 |
C9 |
C16 |
C4 |
244.2 |
240.0 |
| C13 |
C9 |
C16 |
H4 |
121.9 |
120.0 |
| C16 |
C9 |
C13 |
H6 |
176.1 |
300.0 |
| C16 |
C9 |
C13 |
H7 |
295.6 |
180.0 |
| C4 |
C9 |
C16 |
H4 |
237.7 |
240.0 |
| C16 |
C9 |
C4 |
H22 |
64.5 |
180.0 |
| C16 |
C9 |
C4 |
H23 |
183.8 |
60.0 |
| C10 |
C16 |
C9 |
C4 |
56.6 |
60.0 |
| C10 |
C16 |
C9 |
H4 |
178.9 |
180.1 |
| C14 |
C10 |
C16 |
C5 |
118.6 |
120.0 |
| C14 |
C10 |
C16 |
H5 |
238.8 |
239.9 |
| C16 |
C10 |
C14 |
H8 |
59.2 |
180.0 |
| C16 |
C10 |
C14 |
H9 |
179.1 |
60.0 |
| C5 |
C10 |
C16 |
H5 |
120.3 |
120.0 |
| C16 |
C10 |
C5 |
H24 |
183.9 |
300.0 |
| C16 |
C10 |
C5 |
H25 |
303.0 |
180.0 |
| C16 |
C9 |
C13 |
C4 |
120.9 |
120.0 |
| C16 |
C9 |
C13 |
H4 |
238.5 |
240.0 |
| C4 |
C9 |
C13 |
H4 |
117.7 |
120.0 |
| C13 |
C9 |
C4 |
H22 |
184.6 |
300.0 |
| C13 |
C9 |
C4 |
H23 |
303.9 |
180.0 |
| C9 |
C13 |
C8 |
O15 |
174.8 |
180.0 |
| H6 |
C13 |
C9 |
H7 |
240.5 |
119.9 |
| C16 |
C9 |
C4 |
H4 |
122.1 |
120.0 |
| C13 |
C9 |
C4 |
H4 |
242.1 |
240.0 |
| C4 |
C9 |
C13 |
H6 |
55.3 |
180.0 |
| C4 |
C9 |
C13 |
H7 |
174.8 |
60.0 |
| H22 |
C4 |
C9 |
H23 |
240.7 |
120.0 |
| C16 |
C10 |
C14 |
C5 |
244.9 |
240.0 |
| C16 |
C10 |
C14 |
H5 |
121.3 |
120.1 |
| C5 |
C10 |
C14 |
H5 |
236.3 |
240.0 |
| C14 |
C10 |
C5 |
H24 |
68.1 |
180.0 |
| C14 |
C10 |
C5 |
H25 |
187.2 |
60.0 |
| C10 |
C14 |
C8 |
O15 |
178.7 |
180.0 |
| H8 |
C14 |
C10 |
H9 |
240.0 |
120.0 |
| C16 |
C10 |
C5 |
H5 |
239.6 |
240.0 |
| C14 |
C10 |
C5 |
H5 |
123.7 |
120.0 |
| C5 |
C10 |
C14 |
H8 |
174.2 |
300.0 |
| C5 |
C10 |
C14 |
H9 |
294.2 |
180.0 |
| H24 |
C5 |
C10 |
H25 |
240.9 |
120.0 |
| C14 |
C8 |
C13 |
O15 |
129.0 |
120.0 |
| C13 |
C8 |
O15 |
H29 |
180.0 |
60.0 |
| C13 |
C8 |
C3 |
H2 |
66.7 |
180.0 |
| C13 |
C8 |
C3 |
H3 |
186.1 |
60.0 |
| C13 |
C8 |
C14 |
O15 |
240.5 |
239.9 |
| C14 |
C8 |
O15 |
H29 |
56.6 |
299.9 |
| C14 |
C8 |
C3 |
H2 |
187.2 |
300.0 |
| C14 |
C8 |
C3 |
H3 |
306.6 |
180.0 |
| O15 |
C8 |
C3 |
H2 |
316.0 |
60.0 |
| O15 |
C8 |
C3 |
H3 |
75.4 |
300.0 |
| C1 |
C3 |
C8 |
H2 |
239.7 |
120.0 |
| C1 |
C3 |
C8 |
H3 |
120.3 |
240.0 |
| H2 |
C3 |
C8 |
H3 |
240.6 |
120.0 |
| C4 |
C1 |
C3 |
H2 |
291.9 |
179.9 |
| C4 |
C1 |
C3 |
H3 |
172.6 |
300.0 |
| C4 |
C1 |
C2 |
C6 |
180.0 |
294.8 |
| C4 |
C1 |
C2 |
H1 |
61.2 |
174.8 |
| C5 |
C1 |
C3 |
H2 |
176.3 |
59.9 |
| C5 |
C1 |
C3 |
H3 |
57.0 |
180.0 |
| C5 |
C1 |
C2 |
C6 |
302.0 |
54.8 |
| C5 |
C1 |
C2 |
H1 |
183.1 |
294.8 |
| C8 |
C3 |
C1 |
H2 |
120.3 |
240.1 |
| C8 |
C3 |
C1 |
H3 |
239.7 |
120.0 |
| C3 |
C1 |
C2 |
C6 |
61.9 |
174.8 |
| C3 |
C1 |
C2 |
H1 |
303.1 |
54.8 |
| H2 |
C3 |
C1 |
H3 |
119.3 |
239.9 |
| C2 |
C1 |
C3 |
H2 |
50.2 |
299.9 |
| C2 |
C1 |
C3 |
H3 |
290.9 |
60.0 |
| N7 |
C2 |
C1 |
H1 |
238.9 |
240.0 |
| C1 |
C2 |
C6 |
N11 |
253.1 |
276.9 |
| C6 |
C2 |
C1 |
H1 |
118.9 |
120.0 |
| C1 |
C2 |
N7 |
H1 |
120.4 |
120.0 |
| N7 |
C2 |
C6 |
N11 |
129.2 |
156.9 |
| C6 |
C2 |
N7 |
H1 |
243.5 |
240.0 |
| C6 |
C2 |
C1 |
C3 |
61.9 |
174.8 |
| C1 |
C2 |
C6 |
H1 |
241.2 |
240.0 |
| N7 |
C2 |
C6 |
H1 |
117.3 |
120.0 |
| C2 |
C6 |
N11 |
C17 |
358.1 |
173.5 |
| C2 |
C6 |
N11 |
C18 |
193.6 |
352.8 |
| O12 |
C6 |
C2 |
H1 |
192.2 |
216.8 |
| O12 |
C6 |
N11 |
C17 |
177.7 |
353.5 |
| O12 |
C6 |
N11 |
C18 |
13.3 |
172.9 |
| N11 |
C6 |
C2 |
H1 |
11.9 |
36.9 |
| C17 |
N11 |
C6 |
C18 |
164.5 |
180.7 |
| C6 |
N11 |
C17 |
H30 |
341.2 |
295.5 |
| C22 |
C18 |
N11 |
C6 |
279.5 |
338.2 |
| C6 |
N11 |
C18 |
H31 |
37.1 |
101.2 |
| N23 |
C22 |
C18 |
N11 |
0.2 |
125.7 |
| C18 |
C22 |
N23 |
H17 |
180.0 |
180.0 |
| N23 |
C22 |
C18 |
H31 |
242.0 |
2.6 |
| C6 |
N11 |
C17 |
C18 |
194.3 |
179.5 |
| C22 |
C18 |
N11 |
C17 |
111.7 |
157.6 |
| C17 |
N11 |
C18 |
H31 |
229.3 |
280.6 |
| N11 |
C17 |
C20 |
H13 |
206.5 |
347.4 |
| N11 |
C17 |
C20 |
H14 |
348.2 |
201.8 |
| N11 |
C17 |
C19 |
H12 |
153.2 |
138.4 |
| C6 |
N11 |
C18 |
C17 |
167.8 |
180.6 |
| C18 |
N11 |
C17 |
H30 |
146.9 |
116.1 |
| N11 |
C18 |
C22 |
H17 |
180.2 |
305.8 |
| C22 |
C18 |
N11 |
H31 |
242.4 |
237.0 |
| N11 |
C18 |
C21 |
H15 |
141.5 |
204.0 |
| N11 |
C18 |
C21 |
H16 |
264.1 |
80.8 |
| C20 |
C17 |
C19 |
H12 |
253.1 |
251.1 |
| C17 |
C20 |
C19 |
H12 |
107.6 |
112.4 |
| H13 |
C20 |
C17 |
H14 |
218.3 |
145.6 |
| C20 |
C19 |
C17 |
H12 |
106.9 |
108.9 |
| C21 |
C19 |
C17 |
H12 |
223.2 |
223.1 |
| C17 |
C19 |
C21 |
H15 |
216.7 |
140.3 |
| C17 |
C19 |
C21 |
H16 |
94.1 |
263.4 |
| C17 |
C19 |
C20 |
H12 |
252.4 |
247.6 |
| C21 |
C19 |
C20 |
H12 |
154.2 |
155.1 |
| C20 |
C19 |
C21 |
H15 |
285.2 |
205.7 |
| C20 |
C19 |
C21 |
H16 |
162.6 |
328.8 |
| C6 |
N11 |
C18 |
C22 |
279.5 |
338.2 |
| N23 |
C22 |
C18 |
H17 |
180.0 |
180.0 |
| C17 |
N11 |
C18 |
C22 |
111.7 |
157.6 |
| N11 |
C18 |
C22 |
H31 |
118.1 |
123.1 |
| C22 |
C18 |
C21 |
H15 |
14.6 |
85.7 |
| C22 |
C18 |
C21 |
H16 |
137.2 |
322.4 |
| C18 |
C21 |
C19 |
H12 |
198.2 |
242.9 |
| C19 |
C21 |
C18 |
H15 |
241.3 |
118.4 |
| C19 |
C21 |
C18 |
H16 |
118.7 |
241.6 |
| H15 |
C21 |
C18 |
H16 |
237.4 |
123.2 |
| C17 |
C19 |
C21 |
H12 |
137.3 |
139.0 |
| C20 |
C19 |
C21 |
H12 |
205.7 |
204.4 |
| C18 |
C21 |
C19 |
H15 |
118.7 |
241.6 |
| C18 |
C21 |
C19 |
H16 |
241.3 |
118.5 |
| H15 |
C21 |
C19 |
H16 |
122.6 |
236.9 |
| H1 |
C2 |
C1 |
C3 |
303.1 |
54.8 |
| C1 |
C2 |
H1 |
C6 |
121.2 |
120.0 |
| H1 |
C2 |
C6 |
N11 |
11.9 |
36.9 |
| C8 |
C3 |
H2 |
H3 |
119.1 |
240.0 |
| C1 |
C3 |
H2 |
H3 |
241.0 |
120.1 |
| C8 |
C3 |
H3 |
H2 |
240.9 |
119.9 |
| C1 |
C3 |
H3 |
H2 |
119.0 |
239.9 |
| C16 |
C9 |
H4 |
C4 |
236.3 |
240.0 |
| C13 |
C9 |
H4 |
C4 |
113.9 |
120.0 |
| H4 |
C9 |
C13 |
H6 |
297.6 |
59.9 |
| H4 |
C9 |
C13 |
H7 |
57.1 |
300.0 |
| H4 |
C9 |
C4 |
H22 |
302.4 |
60.0 |
| H4 |
C9 |
C4 |
H23 |
61.7 |
300.0 |
| C16 |
C10 |
H5 |
C5 |
117.3 |
120.0 |
| C14 |
C10 |
H5 |
C5 |
236.2 |
240.0 |
| H5 |
C10 |
C14 |
H8 |
297.9 |
60.0 |
| H5 |
C10 |
C14 |
H9 |
57.9 |
300.0 |
| H5 |
C10 |
C5 |
H24 |
304.4 |
60.0 |
| H5 |
C10 |
C5 |
H25 |
63.5 |
300.0 |
| H6 |
C13 |
C9 |
C4 |
55.3 |
180.0 |
| H6 |
C13 |
C9 |
H4 |
297.6 |
59.9 |
| C9 |
C13 |
H6 |
H7 |
119.2 |
240.0 |
| H6 |
C13 |
C8 |
O15 |
54.6 |
300.0 |
| H7 |
C13 |
C9 |
C4 |
174.8 |
60.0 |
| H7 |
C13 |
C9 |
H4 |
57.1 |
300.0 |
| C9 |
C13 |
H7 |
H6 |
240.8 |
120.0 |
| H7 |
C13 |
C8 |
O15 |
295.1 |
60.0 |
| H8 |
C14 |
C10 |
C5 |
174.2 |
300.0 |
| H8 |
C14 |
C10 |
H5 |
297.9 |
60.0 |
| C10 |
C14 |
H8 |
H9 |
119.9 |
240.0 |
| H8 |
C14 |
C8 |
O15 |
58.7 |
300.0 |
| H9 |
C14 |
C10 |
C5 |
294.2 |
180.0 |
| H9 |
C14 |
C10 |
H5 |
57.9 |
300.0 |
| C10 |
C14 |
H9 |
H8 |
240.1 |
120.0 |
| H9 |
C14 |
C8 |
O15 |
298.7 |
60.0 |
| H10 |
C16 |
C9 |
C4 |
176.7 |
180.0 |
| H10 |
C16 |
C9 |
H4 |
299.0 |
300.0 |
| H10 |
C16 |
C10 |
C5 |
182.1 |
180.0 |
| H10 |
C16 |
C10 |
H5 |
61.9 |
60.0 |
| H11 |
C16 |
C9 |
C4 |
296.5 |
300.0 |
| H11 |
C16 |
C9 |
H4 |
58.9 |
60.0 |
| H11 |
C16 |
C10 |
C5 |
62.3 |
60.0 |
| H11 |
C16 |
C10 |
H5 |
302.1 |
300.0 |
| C20 |
C19 |
H12 |
C21 |
155.9 |
155.3 |
| H12 |
C19 |
C21 |
H15 |
79.5 |
1.3 |
| H12 |
C19 |
C21 |
H16 |
316.9 |
124.4 |
| C17 |
C20 |
H13 |
H14 |
145.4 |
213.9 |
| H13 |
C20 |
C19 |
C21 |
152.7 |
16.0 |
| H13 |
C20 |
C19 |
H12 |
358.5 |
220.9 |
| C17 |
C20 |
H14 |
H13 |
214.6 |
146.6 |
| H14 |
C20 |
C19 |
C21 |
11.0 |
160.8 |
| H14 |
C20 |
C19 |
H12 |
216.8 |
5.7 |
| C18 |
C21 |
H15 |
H16 |
123.7 |
236.6 |
| H15 |
C21 |
C19 |
H12 |
79.5 |
1.3 |
| C19 |
C21 |
H15 |
H16 |
236.3 |
123.2 |
| C18 |
C21 |
H16 |
H15 |
236.3 |
123.3 |
| H16 |
C21 |
C19 |
H12 |
316.9 |
124.4 |
| C19 |
C21 |
H16 |
H15 |
123.7 |
236.8 |
| N23 |
C22 |
H17 |
C18 |
180.0 |
180.0 |
| H17 |
C22 |
C18 |
N11 |
180.2 |
305.8 |
| H17 |
C22 |
C18 |
H31 |
62.1 |
182.7 |
| H19 |
N23 |
C22 |
C18 |
180.0 |
180.1 |
| H19 |
N23 |
C22 |
H17 |
360.0 |
0.1 |
| H22 |
C4 |
C9 |
H4 |
302.4 |
60.0 |
| C9 |
C4 |
H22 |
H23 |
118.9 |
240.0 |
| H23 |
C4 |
C9 |
H4 |
61.7 |
300.0 |
| C9 |
C4 |
H23 |
H22 |
241.1 |
120.0 |
| H24 |
C5 |
C10 |
H5 |
304.4 |
60.0 |
| C10 |
C5 |
H24 |
H25 |
118.6 |
240.0 |
| H25 |
C5 |
C10 |
H5 |
63.5 |
300.0 |
| C10 |
C5 |
H25 |
H24 |
241.4 |
120.0 |
| H26 |
N7 |
C2 |
H1 |
59.6 |
56.0 |
| H27 |
N7 |
C2 |
H1 |
179.7 |
180.0 |
| H30 |
C17 |
N11 |
C18 |
146.9 |
116.1 |
| H30 |
C17 |
C20 |
H13 |
355.6 |
141.7 |
| H30 |
C17 |
C20 |
H14 |
137.4 |
356.1 |
| H30 |
C17 |
C19 |
H12 |
5.3 |
358.7 |
| C22 |
C18 |
H31 |
N11 |
122.2 |
123.0 |
| H31 |
C18 |
C22 |
H17 |
62.1 |
182.7 |
| H31 |
C18 |
C21 |
H15 |
257.8 |
322.7 |
| H31 |
C18 |
C21 |
H16 |
20.4 |
199.5 |