PDB Chemical Component BIX

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for BIX

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C2 C3 1.500 1.506
C2 C4 1.548 1.529
C2 N 1.462 1.468
C2 H2 1.100 1.090
C5 C4 1.509 1.530
C5 P6 1.797 1.822
C5 H5 1.100 1.090
C5 H5A 1.100 1.091
C3 O1 1.240 1.343
C3 O3 1.204 1.208
C4 H4 1.100 1.090
C4 H4A 1.099 1.090
C1 CA 1.582 1.530
C1 P6 1.848 1.824
C1 H1 1.100 1.090
C1 H1A 1.100 1.090
OE2 CD 1.253 1.342
CD OE1 1.250 1.209
CD CG 1.542 1.506
CG CB 1.530 1.530
CG HG 1.101 1.090
CG HGA 1.100 1.090
CB CA 1.560 1.530
CB HB 1.099 1.090
CB HBA 1.100 1.090
CA C 1.521 1.507
CA HA 1.100 1.090
C OC 1.279 1.342
C O 1.235 1.208
P6 O61 1.569 1.610
P6 O6 1.491 1.480
N HN 1.000 1.010
N HNA 1.000 1.009
OE2 H15 0.950 0.966
O1 H16 0.950 0.967
OC H17 0.950 0.967
O61 H18 0.950 0.967

Bond Angles for BIX

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C3 C2 C4 112.7 109.5
C3 C2 N 104.9 109.5
C3 C2 H2 110.2 109.5
C2 C3 O1 119.1 120.0
C2 C3 O3 120.9 120.0
C4 C2 N 108.9 109.5
C4 C2 H2 106.4 109.5
C2 C4 C5 113.9 109.5
C2 C4 H4 108.0 109.5
C2 C4 H4A 107.0 109.5
N C2 H2 114.0 109.4
C2 N HN 109.5 111.0
C2 N HNA 109.4 111.0
C4 C5 P6 106.6 109.5
C4 C5 H5 110.4 109.4
C4 C5 H5A 111.1 109.4
C5 C4 H4 108.0 109.4
C5 C4 H4A 107.0 109.5
P6 C5 H5 110.5 109.5
P6 C5 H5A 111.1 109.5
C5 P6 C1 110.7 109.5
C5 P6 O61 109.9 109.5
C5 P6 O6 108.3 109.5
H5 C5 H5A 107.2 109.5
O1 C3 O3 119.9 120.0
C3 O1 H16 109.5 116.9
H4 C4 H4A 113.0 109.4
CA C1 P6 112.3 109.5
CA C1 H1 108.5 109.5
CA C1 H1A 107.9 109.5
C1 CA CB 111.3 109.4
C1 CA C 112.8 109.4
C1 CA HA 105.1 109.5
P6 C1 H1 108.5 109.5
P6 C1 H1A 107.9 109.4
C1 P6 O61 108.1 109.4
C1 P6 O6 105.6 109.5
H1 C1 H1A 111.7 109.5
OE2 CD OE1 121.2 119.9
OE2 CD CG 122.7 120.0
CD OE2 H15 109.5 117.1
OE1 CD CG 116.0 120.0
CD CG CB 109.7 109.5
CD CG HG 109.4 109.5
CD CG HGA 109.3 109.5
CB CG HG 109.4 109.5
CB CG HGA 109.3 109.4
CG CB CA 111.0 109.5
CG CB HB 108.9 109.5
CG CB HBA 108.6 109.4
HG CG HGA 109.7 109.5
CA CB HB 109.0 109.5
CA CB HBA 108.6 109.5
CB CA C 106.9 109.5
CB CA HA 111.2 109.5
HB CB HBA 110.7 109.5
C CA HA 109.6 109.5
CA C OC 120.4 120.0
CA C O 118.5 120.0
OC C O 121.1 120.0
C OC H17 109.5 117.0
O61 P6 O6 114.2 109.5
P6 O61 H18 109.5 114.0
HN N HNA 109.5 110.9

Torsion Angles for BIX

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C4 C2 C3 N 118.3 120.0
C4 C2 C3 H2 241.3 240.0
C3 C2 C4 C5 327.6 175.0
C3 C2 C4 H4 87.6 295.0
C3 C2 C4 H4A 209.6 55.0
N C2 C3 H2 123.1 120.0
C3 C2 N HN 189.0 296.1
C3 C2 N HNA 309.1 60.0
O1 C3 C2 O3 179.0 180.0
C2 C3 O1 H16 181.0 180.0
C3 C2 C4 N 244.1 240.0
C3 C2 C4 H2 120.9 120.0
C4 C2 C3 O1 102.4 280.0
C4 C2 C3 O3 283.4 100.0
N C2 C4 H2 236.8 240.1
C4 C2 N HN 68.2 176.0
C4 C2 N HNA 188.2 299.9
C2 C4 C5 P6 182.9 180.0
C2 C4 C5 H5 302.9 300.0
C2 C4 C5 H5A 61.8 60.0
C5 C4 C2 H4 240.0 240.0
C5 C4 C2 H4A 118.1 120.1
H4 C4 C2 H4A 238.0 240.1
C3 C2 N C4 120.8 120.1
C3 C2 N H2 239.4 240.0
N C2 C3 O1 344.1 160.0
N C2 C3 O3 165.1 340.0
C4 C2 N H2 118.5 120.0
N C2 C4 C5 83.5 295.0
N C2 C4 H4 203.5 55.0
N C2 C4 H4A 325.5 175.0
HN N C2 HNA 240.0 236.1
C3 C2 H2 C4 237.5 240.0
C3 C2 H2 N 117.6 120.0
H2 C2 C3 O1 221.1 40.0
H2 C2 C3 O3 42.1 220.0
C4 C2 H2 N 240.0 240.0
H2 C2 C4 C5 206.7 55.0
H2 C2 C4 H4 326.7 175.0
H2 C2 C4 H4A 88.7 294.9
H2 C2 N HN 309.7 56.1
H2 C2 N HNA 69.7 180.0
C5 C4 C2 N 83.5 295.0
C5 C4 C2 H2 206.7 55.0
C2 C4 C5 H4 120.0 120.0
C2 C4 C5 H4A 241.9 239.9
P6 C5 C4 H5 240.0 240.0
P6 C5 C4 H5A 121.1 120.0
C4 C5 P6 C1 301.3 175.0
C4 C5 P6 O61 60.6 295.0
C4 C5 P6 O6 185.9 55.0
H5 C5 C4 H5A 241.2 240.0
H4 C4 C5 H4A 121.9 119.9
C4 C5 P6 H5 120.0 120.0
C4 C5 P6 H5A 238.9 240.0
P6 C5 C4 H4 62.9 60.0
P6 C5 C4 H4A 300.9 300.1
H5 C5 P6 H5A 118.9 120.0
CA C1 P6 C5 142.1 185.0
C5 P6 C1 H1 22.1 65.0
C5 P6 C1 H1A 260.9 305.0
C1 P6 C5 O61 240.7 240.0
C1 P6 C5 O6 115.3 120.0
O61 P6 C5 O6 234.6 239.9
C5 P6 O61 H18 276.0 300.1
C4 C5 H5 P6 242.3 240.0
C4 C5 H5 H5A 121.2 119.9
H5 C5 C4 H4 182.9 180.0
H5 C5 C4 H4A 61.0 60.1
P6 C5 H5 H5A 238.8 240.0
H5 C5 P6 C1 181.2 55.0
H5 C5 P6 O61 300.5 175.0
H5 C5 P6 O6 65.9 295.0
C4 C5 H5A P6 118.4 120.0
C4 C5 H5A H5 239.2 240.1
H5A C5 C4 H4 301.8 300.0
H5A C5 C4 H4A 179.8 180.0
P6 C5 H5A H5 120.8 120.0
H5A C5 P6 C1 62.4 295.0
H5A C5 P6 O61 181.7 55.0
H5A C5 P6 O6 307.0 175.0
O1 C3 C2 C4 102.4 280.0
O1 C3 C2 N 344.1 160.0
O1 C3 C2 H2 221.1 40.0
C2 C3 O1 O3 181.0 180.0
O3 C3 C2 C4 283.4 100.0
O3 C3 C2 N 165.1 340.0
O3 C3 C2 H2 42.1 220.0
C2 C3 O3 O1 179.0 180.0
O3 C3 O1 H16 0.0 0.0
H4 C4 C2 N 203.5 55.0
H4 C4 C2 H2 326.7 175.0
C2 C4 H4 C5 236.4 239.9
C2 C4 H4 H4A 118.2 120.0
H4 C4 C5 P6 62.9 60.0
H4 C4 C5 H5 182.9 180.0
H4 C4 C5 H5A 301.8 300.0
C5 C4 H4 H4A 241.8 240.1
H4A C4 C2 N 325.5 175.0
H4A C4 C2 H2 88.7 294.9
C2 C4 H4A C5 122.5 120.1
C2 C4 H4A H4 241.2 240.0
H4A C4 C5 P6 300.9 300.1
H4A C4 C5 H5 61.0 60.1
H4A C4 C5 H5A 179.8 180.0
C5 C4 H4A H4 118.8 119.9
C5 P6 C1 CA 142.1 185.0
P6 C1 CA H1 240.0 240.0
P6 C1 CA H1A 118.8 119.9
CA C1 P6 O61 21.7 65.0
CA C1 P6 O6 259.1 305.0
H1 C1 CA H1A 238.8 239.9
CG CB CA C1 46.5 185.0
C1 CA CB HB 286.5 65.0
C1 CA CB HBA 165.9 305.0
CB CA C1 C 239.9 240.0
CB CA C1 HA 120.5 120.0
C CA C1 HA 240.6 240.0
C1 CA C OC 156.1 180.0
C1 CA C O 333.4 0.0
C1 P6 C5 H5 181.2 55.0
C1 P6 C5 H5A 62.4 295.0
C5 P6 C1 O61 120.4 120.0
C5 P6 C1 O6 243.0 240.0
CA C1 P6 H1 120.0 120.0
CA C1 P6 H1A 241.2 240.0
P6 C1 CA CB 170.4 165.0
P6 C1 CA C 290.5 285.0
P6 C1 CA HA 49.9 45.0
H1 C1 P6 H1A 121.2 120.0
O61 P6 C1 O6 122.6 120.0
C1 P6 O61 H18 36.9 60.1
CA C1 H1 P6 237.7 240.0
CA C1 H1 H1A 118.8 120.1
H1 C1 CA CB 290.3 285.0
H1 C1 CA C 50.5 45.0
H1 C1 CA HA 169.9 165.0
P6 C1 H1 H1A 241.1 240.1
H1 C1 P6 O61 261.7 305.0
H1 C1 P6 O6 139.1 185.0
CA C1 H1A P6 121.6 120.0
CA C1 H1A H1 240.8 239.9
H1A C1 CA CB 51.6 45.1
H1A C1 CA C 171.7 165.0
H1A C1 CA HA 291.1 285.1
P6 C1 H1A H1 119.2 120.0
H1A C1 P6 O61 140.5 185.0
H1A C1 P6 O6 17.9 65.0
OE1 CD OE2 CG 181.9 180.0
OE2 CD CG CB 351.2 180.0
OE2 CD CG HG 111.2 300.0
OE2 CD CG HGA 231.3 60.0
OE2 CD OE1 CG 178.2 180.0
OE1 CD OE2 H15 0.0 360.0
OE1 CD CG CB 169.4 0.0
OE1 CD CG HG 289.4 120.0
OE1 CD CG HGA 49.4 240.0
OE2 CD CG OE1 181.9 180.0
CG CD OE2 H15 178.1 180.0
CB CG CD HG 240.0 240.0
CB CG CD HGA 119.9 120.0
CD CG CB CA 173.2 180.0
CD CG CB HB 293.2 300.0
CD CG CB HBA 53.9 60.0
HG CG CD HGA 239.9 240.0
C1 CA CB CG 46.5 185.0
CD CG CB HG 120.0 120.0
CD CG CB HGA 240.1 240.0
HG CG CB HGA 120.1 120.0
CA CB CG HB 240.0 240.0
CA CB CG HBA 119.3 120.0
CG CB CA C 283.0 65.0
CG CB CA HA 163.4 305.0
HB CB CG HBA 239.4 240.0
CD CG HG CB 239.8 240.0
CD CG HG HGA 119.9 120.0
CB CG HG HGA 240.1 240.0
HG CG CB CA 53.2 60.0
HG CG CB HB 173.2 180.0
HG CG CB HBA 293.9 300.0
CD CG HGA CB 120.2 120.0
CD CG HGA HG 240.1 240.0
CB CG HGA HG 119.9 120.0
HGA CG CB CA 293.1 300.0
HGA CG CB HB 53.1 60.0
HGA CG CB HBA 173.8 180.0
CB CA C1 P6 170.4 165.0
CB CA C1 H1 290.3 285.0
CB CA C1 H1A 51.6 45.1
C1 CA CB C 123.5 120.0
C1 CA CB HA 243.2 240.0
CA CB CG HG 53.2 60.0
CA CB CG HGA 293.1 300.0
CG CB CA HB 120.0 120.0
CG CB CA HBA 240.7 240.0
HB CB CA HBA 120.7 120.0
C CA CB HA 119.6 120.0
CB CA C OC 278.7 299.9
CB CA C O 96.0 120.0
HB CB CG HG 173.2 180.0
HB CB CG HGA 53.1 60.0
CG CB HB CA 238.7 240.0
CG CB HB HBA 119.4 120.0
CA CB HB HBA 240.6 240.0
HB CB CA C 163.0 305.0
HB CB CA HA 43.4 185.0
HBA CB CG HG 293.9 300.0
HBA CB CG HGA 173.8 180.0
CG CB HBA CA 120.9 120.0
CG CB HBA HB 240.4 240.0
CA CB HBA HB 119.6 120.1
HBA CB CA C 42.3 185.0
HBA CB CA HA 282.7 65.0
C CA C1 P6 290.5 285.0
C CA C1 H1 50.5 45.0
C CA C1 H1A 171.7 165.0
C1 CA C CB 237.4 240.1
C1 CA C HA 116.7 120.0
C CA CB HB 163.0 305.0
C CA CB HBA 42.3 185.0
CB CA C HA 239.3 240.0
OC C CA O 182.7 180.0
CA C OC H17 177.2 180.0
HA CA C1 P6 49.9 45.0
HA CA C1 H1 169.9 165.0
HA CA C1 H1A 291.1 285.1
C1 CA HA CB 120.5 120.0
C1 CA HA C 238.5 240.0
HA CA CB HB 43.4 185.0
HA CA CB HBA 282.7 65.0
CB CA HA C 118.0 120.0
HA CA C OC 39.3 60.0
HA CA C O 216.7 240.0
OC C CA HA 39.3 60.0
CA C OC O 177.3 180.0
O C CA HA 216.7 240.0
CA C O OC 182.7 180.0
O C OC H17 360.0 360.0
O61 P6 C5 H5 300.5 175.0
O61 P6 C5 H5A 181.7 55.0
C5 P6 O61 C1 239.1 240.0
C5 P6 O61 O6 121.9 120.0
O61 P6 C1 H1 261.7 305.0
O61 P6 C1 H1A 140.5 185.0
C1 P6 O61 O6 242.8 240.0
O6 P6 C5 H5 65.9 295.0
O6 P6 C5 H5A 307.0 175.0
C5 P6 O6 C1 118.6 120.0
C5 P6 O6 O61 237.2 239.9
O6 P6 C1 H1 139.1 185.0
O6 P6 C1 H1A 17.9 65.0
C1 P6 O6 O61 118.6 120.0
O6 P6 O61 H18 154.1 180.1
HN N C2 H2 309.7 56.1
C2 N HN HNA 120.0 123.9
HNA N C2 H2 69.7 180.0
C2 N HNA HN 240.0 236.0
H15 OE2 CD OE1 0.0 360.0
H15 OE2 CD CG 178.1 180.0
H16 O1 C3 O3 0.0 0.0
H17 OC C O 360.0 360.0
H18 O61 P6 O6 154.1 180.1