PDB Chemical Component BIS

Ideal Model

Chemical Description

Name 1,1,5,5-TETRAFLUOROPHOSPHOPENTYLPHOSPHONIC ACID ADENYLATE ESTER
Formula C15 H22 F4 N5 O12 P3
Formal charge 0
Molecular weight 633.276 g/mol
Component type NON-POLYMER

Chemical features

Atom count 61
Chiral atom count 6
Chiral atoms PB PA C4' C3' C2' C1'
Bond count 63
Aromatic bond count 10

Chemical Identifiers

Systematic name (ACDLabs) 5'-O-[(R)-hydroxy{[(R)-hydroxy(1,1,5,5-tetrafluoro-5-phosphonopentyl)phosphoryl]oxy}phosphoryl]adenosine
Systematic name (OpenEye OEToolkits) [5-[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]-1,1,5,5-tetrafluoro-pentyl]phosphonic acid

Chemical Descriptors

Stereo SMILES (CACTVS) Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@](O)(=O)O[P@@](O)(=O)C(F)(F)CCCC(F)(F)[P](O)(O)=O)[C@@H](O)[C@H]3O
SMILES (CACTVS) Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)C(F)(F)CCCC(F)(F)[P](O)(O)=O)[CH](O)[CH]3O
Stereo SMILES (OpenEye) c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@@](=O)(C(CCCC(F)(F)P(=O)(O)O)(F)F)O)O)O)N
InChI descriptor InChI=1S/C15H22F4N5O12P3/c16-14(17,37(27,28)29)2-1-3-15(18,19)38(30,31)36-39(32,33)34-4-7-9(25)10(26)13(35-7)24-6-23-8-11(20)21-5-22-12(8)24/h5-7,9-10,13,25-26H,1-4H2,(H,30,31)(H,32,33)(H2,20,21,22)(H2,27,28,29)/t7-,9-,10-,13-/m1/s1
InChIKey descriptor VWQBAZQMKBHYJA-QYVSTXNMSA-N

Status Information

Last modified 2011-06-04
Created 1999-07-08
Release status REL
Model PDB code 16PK
Processing site RCSB