PDB Chemical Component BIP
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for BIP
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
O1 |
1.238 |
1.207 |
| C1 |
O2 |
1.253 |
1.342 |
| C1 |
C2 |
1.538 |
1.507 |
| O2 |
HO2 |
0.950 |
0.967 |
| C2 |
C3 |
1.536 |
1.528 |
| C2 |
C |
1.538 |
1.530 |
| C2 |
H2 |
1.115 |
1.090 |
| C3 |
I |
1.425 |
2.162 |
| C3 |
H31 |
1.116 |
1.089 |
| C3 |
H32 |
1.115 |
1.090 |
| C |
C1' |
1.509 |
1.507 |
| C |
H1 |
1.115 |
1.089 |
| C |
H2A |
1.114 |
1.090 |
| C1' |
C2' |
1.388 |
1.381 |
| C1' |
C6' |
1.399 |
1.381 |
| C2' |
C3' |
1.404 |
1.381 |
| C2' |
H2' |
1.102 |
1.080 |
| C3' |
C4' |
1.390 |
1.382 |
| C3' |
H3' |
1.103 |
1.080 |
| C4' |
C5' |
1.397 |
1.382 |
| C4' |
H4' |
1.104 |
1.080 |
| C5' |
C6' |
1.394 |
1.383 |
| C5' |
H5' |
1.104 |
1.080 |
| C6' |
H6' |
1.104 |
1.080 |
Bond Angles for BIP
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1 |
C1 |
O2 |
122.2 |
120.1 |
| O1 |
C1 |
C2 |
116.5 |
120.0 |
| O2 |
C1 |
C2 |
121.1 |
119.9 |
| C1 |
O2 |
HO2 |
122.2 |
120.0 |
| C1 |
C2 |
C3 |
111.6 |
109.5 |
| C1 |
C2 |
C |
110.2 |
109.5 |
| C1 |
C2 |
H2 |
109.2 |
109.5 |
| C3 |
C2 |
C |
113.9 |
109.5 |
| C3 |
C2 |
H2 |
105.0 |
109.5 |
| C2 |
C3 |
I |
113.3 |
109.5 |
| C2 |
C3 |
H31 |
110.9 |
109.6 |
| C2 |
C3 |
H32 |
110.8 |
109.5 |
| C |
C2 |
H2 |
106.6 |
109.4 |
| C2 |
C |
C1' |
114.4 |
109.5 |
| C2 |
C |
H1 |
110.4 |
109.5 |
| C2 |
C |
H2A |
110.4 |
109.4 |
| I |
C3 |
H31 |
110.8 |
109.4 |
| I |
C3 |
H32 |
110.8 |
109.4 |
| H31 |
C3 |
H32 |
99.5 |
109.5 |
| C1' |
C |
H1 |
110.4 |
109.5 |
| C1' |
C |
H2A |
110.4 |
109.5 |
| C |
C1' |
C2' |
120.4 |
120.0 |
| C |
C1' |
C6' |
120.9 |
120.0 |
| H1 |
C |
H2A |
99.9 |
109.5 |
| C2' |
C1' |
C6' |
118.7 |
120.0 |
| C1' |
C2' |
C3' |
120.9 |
120.0 |
| C1' |
C2' |
H2' |
119.0 |
120.0 |
| C1' |
C6' |
C5' |
121.0 |
120.0 |
| C1' |
C6' |
H6' |
119.7 |
120.0 |
| C3' |
C2' |
H2' |
120.1 |
120.0 |
| C2' |
C3' |
C4' |
119.9 |
120.0 |
| C2' |
C3' |
H3' |
120.5 |
120.0 |
| C4' |
C3' |
H3' |
119.5 |
120.0 |
| C3' |
C4' |
C5' |
119.7 |
120.0 |
| C3' |
C4' |
H4' |
120.0 |
120.0 |
| C5' |
C4' |
H4' |
120.3 |
120.0 |
| C4' |
C5' |
C6' |
119.9 |
119.9 |
| C4' |
C5' |
H5' |
120.1 |
120.0 |
| C6' |
C5' |
H5' |
120.0 |
120.0 |
| C5' |
C6' |
H6' |
119.3 |
119.9 |
Torsion Angles for BIP
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O2 |
C1 |
O1 |
C2 |
184.7 |
180.1 |
| O1 |
C1 |
O2 |
HO2 |
180.0 |
359.8 |
| O1 |
C1 |
C2 |
C3 |
209.1 |
120.0 |
| O1 |
C1 |
C2 |
C |
81.5 |
0.0 |
| O1 |
C1 |
C2 |
H2 |
324.7 |
240.1 |
| O1 |
C1 |
O2 |
C2 |
175.1 |
179.9 |
| O2 |
C1 |
C2 |
C3 |
24.4 |
300.0 |
| O2 |
C1 |
C2 |
C |
256.8 |
179.9 |
| O2 |
C1 |
C2 |
H2 |
140.0 |
60.0 |
| O1 |
C1 |
C2 |
O2 |
184.7 |
180.1 |
| C2 |
C1 |
O2 |
HO2 |
4.9 |
179.9 |
| C3 |
C2 |
C1 |
C |
127.6 |
120.0 |
| C3 |
C2 |
C1 |
H2 |
244.4 |
239.9 |
| C1 |
C2 |
C3 |
I |
183.4 |
60.0 |
| C1 |
C2 |
C3 |
H31 |
308.6 |
180.0 |
| C1 |
C2 |
C3 |
H32 |
58.1 |
300.0 |
| C |
C2 |
C1 |
H2 |
116.8 |
119.9 |
| C1 |
C2 |
C |
C1' |
55.0 |
180.0 |
| C1 |
C2 |
C |
H1 |
180.2 |
300.1 |
| C1 |
C2 |
C |
H2A |
289.7 |
60.0 |
| HO2 |
O2 |
C1 |
C2 |
4.9 |
179.9 |
| C1 |
C2 |
C3 |
C |
234.4 |
240.0 |
| C1 |
C2 |
C3 |
H2 |
118.2 |
120.1 |
| C |
C2 |
C3 |
H2 |
243.7 |
240.1 |
| C3 |
C2 |
C |
C1' |
288.6 |
59.9 |
| C3 |
C2 |
C |
H1 |
53.9 |
180.0 |
| C3 |
C2 |
C |
H2A |
163.4 |
300.0 |
| I |
C3 |
C2 |
H31 |
234.7 |
240.0 |
| I |
C3 |
C2 |
H32 |
125.3 |
120.0 |
| H31 |
C3 |
C2 |
H32 |
250.5 |
239.9 |
| C1 |
C2 |
C |
C3 |
126.3 |
120.1 |
| C1 |
C2 |
C |
H2 |
241.6 |
240.0 |
| C3 |
C2 |
C |
H2 |
115.3 |
120.0 |
| C |
C2 |
C3 |
I |
308.9 |
180.0 |
| C |
C2 |
C3 |
H31 |
74.2 |
300.0 |
| C |
C2 |
C3 |
H32 |
183.7 |
60.1 |
| C1' |
C |
C2 |
H1 |
234.8 |
239.9 |
| C1' |
C |
C2 |
H2A |
125.3 |
120.0 |
| C2 |
C |
C1' |
C2' |
266.4 |
90.1 |
| C2 |
C |
C1' |
C6' |
86.1 |
269.7 |
| H1 |
C |
C2 |
H2A |
250.5 |
240.0 |
| C1 |
C2 |
H2 |
C3 |
240.2 |
239.9 |
| C1 |
C2 |
H2 |
C |
119.0 |
119.9 |
| C3 |
C2 |
H2 |
C |
238.8 |
240.0 |
| H2 |
C2 |
C3 |
I |
65.2 |
299.9 |
| H2 |
C2 |
C3 |
H31 |
190.5 |
59.9 |
| H2 |
C2 |
C3 |
H32 |
299.9 |
180.0 |
| H2 |
C2 |
C |
C1' |
173.3 |
300.0 |
| H2 |
C2 |
C |
H1 |
298.6 |
60.0 |
| H2 |
C2 |
C |
H2A |
48.1 |
180.0 |
| I |
C3 |
C2 |
C |
308.9 |
180.0 |
| I |
C3 |
C2 |
H2 |
65.2 |
299.9 |
| C2 |
C3 |
I |
H31 |
125.3 |
120.1 |
| C2 |
C3 |
I |
H32 |
234.7 |
240.0 |
| H31 |
C3 |
I |
H32 |
109.4 |
119.9 |
| H31 |
C3 |
C2 |
C |
74.2 |
300.0 |
| H31 |
C3 |
C2 |
H2 |
190.5 |
59.9 |
| C2 |
C3 |
H31 |
I |
233.4 |
240.0 |
| C2 |
C3 |
H31 |
H32 |
116.7 |
120.1 |
| I |
C3 |
H31 |
H32 |
243.3 |
240.1 |
| H32 |
C3 |
C2 |
C |
183.7 |
60.1 |
| H32 |
C3 |
C2 |
H2 |
299.9 |
180.0 |
| C2 |
C3 |
H32 |
I |
126.6 |
120.0 |
| C2 |
C3 |
H32 |
H31 |
243.3 |
239.9 |
| I |
C3 |
H32 |
H31 |
116.6 |
119.9 |
| C1' |
C |
C2 |
H2 |
173.3 |
300.0 |
| C2 |
C |
C1' |
H1 |
125.2 |
120.1 |
| C2 |
C |
C1' |
H2A |
234.7 |
240.1 |
| H1 |
C |
C1' |
H2A |
109.5 |
120.0 |
| C2' |
C1' |
C |
C6' |
180.3 |
180.4 |
| C |
C1' |
C2' |
C3' |
179.4 |
180.0 |
| C |
C1' |
C2' |
H2' |
359.3 |
359.9 |
| C |
C1' |
C6' |
C5' |
180.6 |
179.8 |
| C |
C1' |
C6' |
H6' |
0.6 |
0.3 |
| H1 |
C |
C2 |
H2 |
298.6 |
60.0 |
| C2 |
C |
H1 |
C1' |
232.5 |
239.9 |
| C2 |
C |
H1 |
H2A |
116.3 |
119.9 |
| C1' |
C |
H1 |
H2A |
243.8 |
240.0 |
| H1 |
C |
C1' |
C2' |
141.2 |
330.0 |
| H1 |
C |
C1' |
C6' |
320.9 |
149.6 |
| H2A |
C |
C2 |
H2 |
48.1 |
180.0 |
| C2 |
C |
H2A |
C1' |
127.5 |
120.0 |
| C2 |
C |
H2A |
H1 |
243.8 |
240.0 |
| C1' |
C |
H2A |
H1 |
116.2 |
120.0 |
| H2A |
C |
C1' |
C2' |
31.7 |
210.0 |
| H2A |
C |
C1' |
C6' |
211.4 |
29.7 |
| C2' |
C1' |
C |
H1 |
141.2 |
330.0 |
| C2' |
C1' |
C |
H2A |
31.7 |
210.0 |
| C |
C1' |
C2' |
C6' |
179.7 |
179.6 |
| C2' |
C1' |
C6' |
C5' |
0.3 |
359.4 |
| C2' |
C1' |
C6' |
H6' |
180.3 |
179.9 |
| C3' |
C2' |
C1' |
H2' |
180.0 |
180.1 |
| C1' |
C2' |
C3' |
C4' |
0.1 |
359.9 |
| C1' |
C2' |
C3' |
H3' |
180.1 |
179.9 |
| C6' |
C1' |
C |
H1 |
320.9 |
149.6 |
| C6' |
C1' |
C |
H2A |
211.4 |
29.7 |
| C |
C1' |
C6' |
C2' |
180.3 |
180.4 |
| C6' |
C1' |
C2' |
C3' |
359.7 |
0.3 |
| C6' |
C1' |
C2' |
H2' |
179.6 |
180.3 |
| C4' |
C5' |
C6' |
C1' |
0.0 |
0.5 |
| C1' |
C6' |
C5' |
H5' |
180.0 |
180.3 |
| C5' |
C6' |
C1' |
H6' |
180.0 |
179.5 |
| C3' |
C2' |
C1' |
C6' |
359.7 |
0.3 |
| C1' |
C2' |
C3' |
H2' |
180.0 |
179.9 |
| C4' |
C3' |
C2' |
H3' |
180.0 |
180.1 |
| C2' |
C3' |
C4' |
C5' |
0.2 |
0.0 |
| C2' |
C3' |
C4' |
H4' |
180.2 |
179.9 |
| H2' |
C2' |
C1' |
C6' |
179.6 |
180.3 |
| C1' |
C2' |
H2' |
C3' |
180.0 |
180.1 |
| H2' |
C2' |
C3' |
C4' |
180.1 |
180.0 |
| H2' |
C2' |
C3' |
H3' |
0.1 |
360.0 |
| C4' |
C3' |
C2' |
H2' |
180.1 |
180.0 |
| C2' |
C3' |
C4' |
H3' |
180.0 |
179.9 |
| C5' |
C4' |
C3' |
H4' |
180.0 |
180.1 |
| C3' |
C4' |
C5' |
C6' |
359.7 |
359.8 |
| C3' |
C4' |
C5' |
H5' |
179.7 |
179.9 |
| H3' |
C3' |
C2' |
H2' |
0.1 |
360.0 |
| C2' |
C3' |
H3' |
C4' |
180.0 |
180.1 |
| H3' |
C3' |
C4' |
C5' |
180.2 |
180.1 |
| H3' |
C3' |
C4' |
H4' |
0.2 |
360.0 |
| C1' |
C6' |
C5' |
C4' |
0.0 |
0.5 |
| C5' |
C4' |
C3' |
H3' |
180.2 |
180.1 |
| C3' |
C4' |
C5' |
H4' |
180.0 |
179.9 |
| C6' |
C5' |
C4' |
H5' |
180.0 |
179.8 |
| C4' |
C5' |
C6' |
H6' |
180.0 |
180.0 |
| H4' |
C4' |
C3' |
H3' |
0.2 |
360.0 |
| C3' |
C4' |
H4' |
C5' |
180.0 |
180.1 |
| H4' |
C4' |
C5' |
C6' |
179.7 |
179.9 |
| H4' |
C4' |
C5' |
H5' |
359.7 |
0.0 |
| C1' |
C6' |
C5' |
H6' |
180.0 |
180.5 |
| C6' |
C5' |
C4' |
H4' |
179.7 |
179.9 |
| C4' |
C5' |
C6' |
H5' |
180.0 |
180.2 |
| H5' |
C5' |
C4' |
H4' |
359.7 |
0.0 |
| C4' |
C5' |
H5' |
C6' |
180.0 |
179.8 |
| H5' |
C5' |
C6' |
H6' |
360.0 |
359.8 |
| C1' |
C6' |
H6' |
C5' |
180.0 |
179.5 |
| H6' |
C6' |
C5' |
H5' |
360.0 |
359.8 |