PDB Chemical Component BHS
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for BHS
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C2 |
1.359 |
1.315 |
| N1 |
C8A |
1.396 |
1.338 |
| C2 |
N2 |
1.309 |
1.372 |
| C2 |
N3 |
1.389 |
1.360 |
| N2 |
HN21 |
1.020 |
0.970 |
| N2 |
HN22 |
1.020 |
0.969 |
| N3 |
C4 |
1.446 |
1.350 |
| N3 |
HN3 |
1.019 |
0.971 |
| C4 |
O4 |
1.224 |
1.222 |
| C4 |
C4A |
1.413 |
1.399 |
| C4A |
C8A |
1.407 |
1.387 |
| C4A |
N5 |
1.363 |
1.412 |
| C8A |
N8 |
1.349 |
1.387 |
| N5 |
C6 |
1.440 |
1.471 |
| N5 |
HN5 |
1.021 |
0.970 |
| C6 |
C7 |
1.524 |
1.535 |
| C6 |
C1' |
1.530 |
1.529 |
| C6 |
H6 |
1.114 |
1.091 |
| C7 |
N8 |
1.411 |
1.470 |
| C7 |
H71 |
1.115 |
1.090 |
| C7 |
H72 |
1.116 |
1.090 |
| N8 |
HN8 |
1.019 |
0.969 |
| C1' |
O1' |
1.434 |
1.429 |
| C1' |
C2' |
1.519 |
1.529 |
| C1' |
H1' |
1.116 |
1.091 |
| O1' |
HO1 |
0.950 |
0.966 |
| C2' |
O2' |
1.451 |
1.429 |
| C2' |
C3' |
1.524 |
1.530 |
| C2' |
H2' |
1.115 |
1.091 |
| O2' |
HO2 |
0.950 |
0.967 |
| C3' |
H3'1 |
1.114 |
1.090 |
| C3' |
H3'2 |
1.115 |
1.090 |
| C3' |
H3'3 |
1.115 |
1.089 |
Bond Angles for BHS
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C8A |
122.6 |
121.0 |
| N1 |
C2 |
N2 |
120.3 |
119.2 |
| N1 |
C2 |
N3 |
118.3 |
121.6 |
| N1 |
C8A |
C4A |
118.7 |
119.6 |
| N1 |
C8A |
N8 |
118.1 |
120.5 |
| N2 |
C2 |
N3 |
121.4 |
119.2 |
| C2 |
N2 |
HN21 |
120.2 |
120.0 |
| C2 |
N2 |
HN22 |
108.3 |
120.0 |
| C2 |
N3 |
C4 |
123.3 |
120.1 |
| C2 |
N3 |
HN3 |
116.2 |
119.9 |
| HN21 |
N2 |
HN22 |
108.4 |
120.0 |
| C4 |
N3 |
HN3 |
120.5 |
119.9 |
| N3 |
C4 |
O4 |
119.2 |
120.8 |
| N3 |
C4 |
C4A |
114.8 |
118.5 |
| O4 |
C4 |
C4A |
125.9 |
120.7 |
| C4 |
C4A |
C8A |
122.2 |
119.1 |
| C4 |
C4A |
N5 |
117.6 |
120.8 |
| C8A |
C4A |
N5 |
120.2 |
120.1 |
| C4A |
C8A |
N8 |
123.3 |
119.9 |
| C4A |
N5 |
C6 |
116.3 |
118.4 |
| C4A |
N5 |
HN5 |
109.7 |
120.8 |
| C8A |
N8 |
C7 |
119.1 |
119.0 |
| C8A |
N8 |
HN8 |
108.8 |
120.5 |
| C6 |
N5 |
HN5 |
109.7 |
120.8 |
| N5 |
C6 |
C7 |
115.8 |
108.0 |
| N5 |
C6 |
C1' |
115.3 |
109.8 |
| N5 |
C6 |
H6 |
98.5 |
109.7 |
| C7 |
C6 |
C1' |
101.8 |
109.8 |
| C7 |
C6 |
H6 |
112.8 |
109.8 |
| C6 |
C7 |
N8 |
116.8 |
108.3 |
| C6 |
C7 |
H71 |
109.5 |
109.7 |
| C6 |
C7 |
H72 |
109.5 |
109.7 |
| C1' |
C6 |
H6 |
113.3 |
109.8 |
| C6 |
C1' |
O1' |
110.1 |
109.5 |
| C6 |
C1' |
C2' |
110.2 |
109.5 |
| C6 |
C1' |
H1' |
109.3 |
109.4 |
| N8 |
C7 |
H71 |
109.6 |
109.7 |
| N8 |
C7 |
H72 |
109.6 |
109.7 |
| C7 |
N8 |
HN8 |
108.7 |
120.5 |
| H71 |
C7 |
H72 |
100.6 |
109.8 |
| O1' |
C1' |
C2' |
111.6 |
109.5 |
| O1' |
C1' |
H1' |
107.8 |
109.5 |
| C1' |
O1' |
HO1 |
110.1 |
106.8 |
| C2' |
C1' |
H1' |
107.7 |
109.4 |
| C1' |
C2' |
O2' |
110.7 |
109.5 |
| C1' |
C2' |
C3' |
111.2 |
109.5 |
| C1' |
C2' |
H2' |
107.6 |
109.4 |
| O2' |
C2' |
C3' |
110.0 |
109.5 |
| O2' |
C2' |
H2' |
108.8 |
109.5 |
| C2' |
O2' |
HO2 |
110.7 |
106.8 |
| C3' |
C2' |
H2' |
108.4 |
109.5 |
| C2' |
C3' |
H3'1 |
111.2 |
109.5 |
| C2' |
C3' |
H3'2 |
111.6 |
109.4 |
| C2' |
C3' |
H3'3 |
111.6 |
109.4 |
| H3'1 |
C3' |
H3'2 |
111.6 |
109.5 |
| H3'1 |
C3' |
H3'3 |
111.6 |
109.5 |
| H3'2 |
C3' |
H3'3 |
98.8 |
109.5 |
Torsion Angles for BHS
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C8A |
C4A |
358.7 |
359.8 |
| C2 |
N1 |
C8A |
N8 |
179.9 |
179.8 |
| N2 |
C2 |
N1 |
N3 |
179.3 |
180.0 |
| N1 |
C2 |
N2 |
HN21 |
180.0 |
360.0 |
| N1 |
C2 |
N2 |
HN22 |
54.8 |
180.0 |
| N1 |
C2 |
N3 |
C4 |
359.1 |
360.0 |
| N1 |
C2 |
N3 |
HN3 |
179.1 |
180.1 |
| C8A |
N1 |
C2 |
N2 |
180.4 |
180.1 |
| C8A |
N1 |
C2 |
N3 |
1.1 |
0.1 |
| C4 |
C4A |
C8A |
N1 |
1.3 |
0.2 |
| N1 |
C8A |
C4A |
N5 |
179.9 |
180.2 |
| C4A |
C8A |
N1 |
N8 |
178.8 |
180.0 |
| N1 |
C8A |
N8 |
C7 |
167.8 |
162.8 |
| N1 |
C8A |
N8 |
HN8 |
42.5 |
342.9 |
| N2 |
C2 |
N1 |
C8A |
180.4 |
180.1 |
| N1 |
C2 |
N2 |
N3 |
180.7 |
180.0 |
| N2 |
C2 |
N3 |
C4 |
179.8 |
180.0 |
| N2 |
C2 |
N3 |
HN3 |
359.9 |
0.1 |
| HN21 |
N2 |
C2 |
HN22 |
125.3 |
180.0 |
| N3 |
C2 |
N1 |
C8A |
1.1 |
0.1 |
| N1 |
C2 |
N3 |
N2 |
179.3 |
180.0 |
| N3 |
C2 |
N2 |
HN21 |
359.3 |
179.9 |
| N3 |
C2 |
N2 |
HN22 |
234.0 |
360.0 |
| C4 |
N3 |
C2 |
HN3 |
180.0 |
179.9 |
| C2 |
N3 |
C4 |
O4 |
180.3 |
179.9 |
| C2 |
N3 |
C4 |
C4A |
0.9 |
0.0 |
| HN21 |
N2 |
C2 |
N3 |
359.3 |
179.9 |
| C2 |
N2 |
HN21 |
HN22 |
234.8 |
180.0 |
| HN22 |
N2 |
C2 |
N3 |
234.0 |
360.0 |
| C2 |
N2 |
HN22 |
HN21 |
132.0 |
180.0 |
| C2 |
N3 |
C4 |
HN3 |
180.0 |
180.1 |
| O4 |
C4 |
N3 |
C4A |
179.4 |
179.9 |
| N3 |
C4 |
C4A |
C8A |
358.9 |
359.9 |
| N3 |
C4 |
C4A |
N5 |
180.3 |
179.9 |
| C2 |
N3 |
HN3 |
C4 |
180.0 |
179.9 |
| HN3 |
N3 |
C4 |
O4 |
0.2 |
359.8 |
| HN3 |
N3 |
C4 |
C4A |
180.8 |
179.9 |
| O4 |
C4 |
N3 |
HN3 |
0.2 |
359.8 |
| N3 |
C4 |
O4 |
C4A |
180.7 |
180.1 |
| O4 |
C4 |
C4A |
C8A |
179.6 |
180.0 |
| O4 |
C4 |
C4A |
N5 |
0.9 |
360.0 |
| N1 |
C8A |
C4A |
C4 |
1.3 |
0.2 |
| C4A |
C4 |
N3 |
HN3 |
180.8 |
179.9 |
| N3 |
C4 |
C4A |
O4 |
179.4 |
179.9 |
| C8A |
C4A |
C4 |
N5 |
178.7 |
180.0 |
| C4 |
C4A |
C8A |
N8 |
180.0 |
180.2 |
| C4 |
C4A |
N5 |
C6 |
203.2 |
164.1 |
| C4 |
C4A |
N5 |
HN5 |
77.9 |
344.1 |
| N1 |
C8A |
C4A |
N8 |
181.3 |
180.0 |
| C4 |
C4A |
C8A |
N5 |
181.4 |
180.0 |
| C8A |
C4A |
N5 |
C6 |
24.5 |
344.0 |
| C8A |
C4A |
N5 |
HN5 |
259.3 |
164.0 |
| C4A |
C8A |
N8 |
C7 |
349.1 |
342.8 |
| C4A |
C8A |
N8 |
HN8 |
223.8 |
162.9 |
| C4 |
C4A |
N5 |
C8A |
178.7 |
180.0 |
| N5 |
C4A |
C8A |
N8 |
358.7 |
0.3 |
| C6 |
N5 |
C4A |
HN5 |
125.2 |
180.0 |
| C4A |
N5 |
C6 |
C7 |
325.8 |
44.1 |
| C4A |
N5 |
C6 |
C1' |
207.2 |
284.5 |
| C4A |
N5 |
C6 |
H6 |
86.3 |
163.8 |
| N1 |
C8A |
N8 |
C4A |
178.7 |
180.0 |
| N8 |
C8A |
C4A |
N5 |
358.7 |
0.3 |
| C6 |
C7 |
N8 |
C8A |
359.7 |
45.7 |
| C8A |
N8 |
C7 |
H71 |
234.4 |
286.0 |
| C8A |
N8 |
C7 |
H72 |
124.9 |
165.4 |
| C7 |
N8 |
C8A |
HN8 |
125.3 |
179.9 |
| C4A |
N5 |
C6 |
HN5 |
234.7 |
180.0 |
| C7 |
C6 |
N5 |
C1' |
118.7 |
119.7 |
| C7 |
C6 |
N5 |
H6 |
239.5 |
240.4 |
| N5 |
C6 |
C7 |
N8 |
22.4 |
303.6 |
| N5 |
C6 |
C7 |
H71 |
147.8 |
63.3 |
| N5 |
C6 |
C7 |
H72 |
257.2 |
183.9 |
| C1' |
C6 |
N5 |
H6 |
120.9 |
120.7 |
| N5 |
C6 |
C1' |
O1' |
359.0 |
59.3 |
| N5 |
C6 |
C1' |
C2' |
235.5 |
299.3 |
| N5 |
C6 |
C1' |
H1' |
117.3 |
179.3 |
| C4A |
N5 |
HN5 |
C6 |
129.0 |
180.0 |
| HN5 |
N5 |
C6 |
C7 |
91.1 |
224.1 |
| HN5 |
N5 |
C6 |
C1' |
332.4 |
104.5 |
| HN5 |
N5 |
C6 |
H6 |
211.6 |
343.8 |
| C8A |
N8 |
C7 |
C6 |
359.7 |
45.7 |
| C7 |
C6 |
N5 |
HN5 |
91.1 |
224.1 |
| N5 |
C6 |
C7 |
C1' |
234.2 |
240.3 |
| N5 |
C6 |
C7 |
H6 |
112.4 |
119.6 |
| C1' |
C6 |
C7 |
H6 |
238.2 |
239.3 |
| C7 |
C6 |
C1' |
O1' |
232.8 |
300.7 |
| C7 |
C6 |
C1' |
C2' |
109.3 |
180.6 |
| C7 |
C6 |
C1' |
H1' |
351.0 |
60.7 |
| N8 |
C7 |
C6 |
H71 |
234.7 |
240.3 |
| N8 |
C7 |
C6 |
H72 |
125.3 |
119.7 |
| C6 |
C7 |
N8 |
HN8 |
125.0 |
225.5 |
| H71 |
C7 |
C6 |
H72 |
250.6 |
239.4 |
| C1' |
C6 |
N5 |
HN5 |
332.4 |
104.5 |
| N5 |
C6 |
C1' |
C7 |
126.2 |
118.6 |
| N5 |
C6 |
C1' |
H6 |
247.6 |
239.3 |
| C7 |
C6 |
C1' |
H6 |
121.4 |
120.7 |
| C1' |
C6 |
C7 |
N8 |
148.3 |
63.2 |
| C1' |
C6 |
C7 |
H71 |
273.6 |
183.0 |
| C1' |
C6 |
C7 |
H72 |
23.0 |
303.6 |
| O1' |
C1' |
C6 |
C2' |
123.5 |
120.0 |
| O1' |
C1' |
C6 |
H1' |
241.8 |
240.0 |
| C6 |
C1' |
O1' |
HO1 |
180.0 |
300.0 |
| C2' |
C1' |
C6 |
H1' |
118.2 |
119.9 |
| C6 |
C1' |
C2' |
O2' |
302.7 |
300.0 |
| C6 |
C1' |
C2' |
C3' |
180.1 |
180.0 |
| C6 |
C1' |
C2' |
H2' |
61.5 |
60.0 |
| H6 |
C6 |
N5 |
HN5 |
211.6 |
343.8 |
| N5 |
C6 |
H6 |
C7 |
237.3 |
241.4 |
| N5 |
C6 |
H6 |
C1' |
122.3 |
120.7 |
| C7 |
C6 |
H6 |
C1' |
245.0 |
239.3 |
| H6 |
C6 |
C7 |
N8 |
270.1 |
184.0 |
| H6 |
C6 |
C7 |
H71 |
35.4 |
303.7 |
| H6 |
C6 |
C7 |
H72 |
144.8 |
64.3 |
| H6 |
C6 |
C1' |
O1' |
111.4 |
179.9 |
| H6 |
C6 |
C1' |
C2' |
347.9 |
59.9 |
| H6 |
C6 |
C1' |
H1' |
229.7 |
300.0 |
| C8A |
N8 |
C7 |
HN8 |
234.7 |
180.1 |
| N8 |
C7 |
C6 |
C1' |
148.3 |
63.2 |
| N8 |
C7 |
C6 |
H6 |
270.1 |
184.0 |
| C6 |
C7 |
N8 |
H71 |
125.3 |
119.7 |
| C6 |
C7 |
N8 |
H72 |
234.8 |
240.3 |
| H71 |
C7 |
N8 |
H72 |
109.5 |
120.6 |
| H71 |
C7 |
C6 |
C1' |
273.6 |
183.0 |
| H71 |
C7 |
C6 |
H6 |
35.4 |
303.7 |
| C6 |
C7 |
H71 |
N8 |
230.6 |
241.1 |
| C6 |
C7 |
H71 |
H72 |
115.3 |
120.6 |
| N8 |
C7 |
H71 |
H72 |
244.7 |
239.4 |
| H71 |
C7 |
N8 |
HN8 |
359.7 |
105.8 |
| H72 |
C7 |
C6 |
C1' |
23.0 |
303.6 |
| H72 |
C7 |
C6 |
H6 |
144.8 |
64.3 |
| C6 |
C7 |
H72 |
N8 |
129.4 |
118.9 |
| C6 |
C7 |
H72 |
H71 |
244.7 |
239.4 |
| N8 |
C7 |
H72 |
H71 |
115.3 |
120.6 |
| H72 |
C7 |
N8 |
HN8 |
250.2 |
345.2 |
| C8A |
N8 |
HN8 |
C7 |
131.1 |
179.9 |
| HN8 |
N8 |
C7 |
H71 |
359.7 |
105.8 |
| HN8 |
N8 |
C7 |
H72 |
250.2 |
345.2 |
| O1' |
C1' |
C6 |
H6 |
111.4 |
179.9 |
| C6 |
C1' |
O1' |
C2' |
237.3 |
239.9 |
| C6 |
C1' |
O1' |
H1' |
119.2 |
120.0 |
| C2' |
C1' |
O1' |
H1' |
241.9 |
240.0 |
| O1' |
C1' |
C2' |
O2' |
180.0 |
180.0 |
| O1' |
C1' |
C2' |
C3' |
57.4 |
60.0 |
| O1' |
C1' |
C2' |
H2' |
298.8 |
300.0 |
| C2' |
C1' |
C6 |
H6 |
347.9 |
59.9 |
| C6 |
C1' |
C2' |
O1' |
122.7 |
120.0 |
| C6 |
C1' |
C2' |
H1' |
240.8 |
240.1 |
| O1' |
C1' |
C2' |
H1' |
118.1 |
120.0 |
| C2' |
C1' |
O1' |
HO1 |
302.8 |
60.1 |
| O2' |
C2' |
C1' |
C3' |
122.6 |
120.0 |
| O2' |
C2' |
C1' |
H2' |
241.1 |
240.0 |
| C1' |
C2' |
O2' |
HO2 |
180.0 |
300.0 |
| C3' |
C2' |
C1' |
H2' |
118.5 |
120.0 |
| C1' |
C2' |
C3' |
H3'1 |
180.0 |
180.0 |
| C1' |
C2' |
C3' |
H3'2 |
305.2 |
300.1 |
| C1' |
C2' |
C3' |
H3'3 |
54.7 |
60.1 |
| H1' |
C1' |
C6 |
H6 |
229.7 |
300.0 |
| C6 |
C1' |
H1' |
O1' |
240.3 |
240.0 |
| C6 |
C1' |
H1' |
C2' |
119.8 |
120.0 |
| O1' |
C1' |
H1' |
C2' |
239.5 |
240.0 |
| H1' |
C1' |
O1' |
HO1 |
60.9 |
180.1 |
| H1' |
C1' |
C2' |
O2' |
61.9 |
60.0 |
| H1' |
C1' |
C2' |
C3' |
299.2 |
299.9 |
| H1' |
C1' |
C2' |
H2' |
180.7 |
179.9 |
| HO1 |
O1' |
C1' |
C2' |
302.8 |
60.1 |
| HO1 |
O1' |
C1' |
H1' |
60.9 |
180.1 |
| O2' |
C2' |
C1' |
H1' |
61.9 |
60.0 |
| C1' |
C2' |
O2' |
C3' |
236.7 |
239.9 |
| C1' |
C2' |
O2' |
H2' |
118.1 |
119.9 |
| C3' |
C2' |
O2' |
H2' |
241.4 |
240.0 |
| O2' |
C2' |
C3' |
H3'1 |
57.0 |
60.0 |
| O2' |
C2' |
C3' |
H3'2 |
182.2 |
180.0 |
| O2' |
C2' |
C3' |
H3'3 |
291.7 |
300.0 |
| C3' |
C2' |
C1' |
H1' |
299.2 |
299.9 |
| C1' |
C2' |
C3' |
O2' |
123.0 |
120.0 |
| C1' |
C2' |
C3' |
H2' |
241.9 |
240.1 |
| O2' |
C2' |
C3' |
H2' |
118.9 |
120.0 |
| C3' |
C2' |
O2' |
HO2 |
303.3 |
60.0 |
| H3'1 |
C3' |
C2' |
H3'2 |
234.7 |
239.9 |
| H3'1 |
C3' |
C2' |
H3'3 |
125.3 |
120.0 |
| H3'2 |
C3' |
C2' |
H3'3 |
250.5 |
240.0 |
| H2' |
C2' |
C1' |
H1' |
180.7 |
179.9 |
| C1' |
C2' |
H2' |
O2' |
239.9 |
240.0 |
| C1' |
C2' |
H2' |
C3' |
120.3 |
120.0 |
| O2' |
C2' |
H2' |
C3' |
240.4 |
240.0 |
| H2' |
C2' |
O2' |
HO2 |
61.9 |
180.0 |
| H2' |
C2' |
C3' |
H3'1 |
298.1 |
300.0 |
| H2' |
C2' |
C3' |
H3'2 |
63.3 |
60.0 |
| H2' |
C2' |
C3' |
H3'3 |
172.8 |
180.0 |
| HO2 |
O2' |
C2' |
C3' |
303.3 |
60.0 |
| HO2 |
O2' |
C2' |
H2' |
61.9 |
180.0 |
| H3'1 |
C3' |
C2' |
H2' |
298.1 |
300.0 |
| C2' |
C3' |
H3'1 |
H3'2 |
125.3 |
120.0 |
| C2' |
C3' |
H3'1 |
H3'3 |
234.7 |
240.1 |
| H3'2 |
C3' |
H3'1 |
H3'3 |
109.4 |
120.1 |
| H3'2 |
C3' |
C2' |
H2' |
63.3 |
60.0 |
| C2' |
C3' |
H3'2 |
H3'1 |
235.0 |
240.0 |
| C2' |
C3' |
H3'2 |
H3'3 |
117.5 |
119.9 |
| H3'1 |
C3' |
H3'2 |
H3'3 |
242.6 |
240.0 |
| H3'3 |
C3' |
C2' |
H2' |
172.8 |
180.0 |
| C2' |
C3' |
H3'3 |
H3'1 |
125.1 |
120.0 |
| C2' |
C3' |
H3'3 |
H3'2 |
242.5 |
240.0 |
| H3'1 |
C3' |
H3'3 |
H3'2 |
117.4 |
120.1 |