PDB Chemical Component BGS

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for BGS

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C2'	S1	1.853	1.814
C2'	CS	1.512	1.530
C2'	H2'1	1.100	1.090
C2'	H2'2	1.100	1.090
O2'	S1	1.487	1.421
C5	C6	1.516	1.531
C5	C4	1.553	1.531
C5	O5	1.465	1.426
C5	H5	1.100	1.090
C6	O6	1.419	1.429
C6	H61	1.100	1.090
C6	H62	1.100	1.089
C2	C1	1.552	1.530
C2	O2	1.403	1.430
C2	C3	1.533	1.533
C2	H2	1.100	1.091
C4	C3	1.535	1.534
C4	O4	1.450	1.429
C4	H4	1.100	1.090
C1	S1	1.815	1.814
C1	O5	1.456	1.427
C1	H1	1.101	1.090
S1	O1'	1.474	1.420
O2	HO2	0.950	0.967
C3	O3	1.398	1.429
C3	H3	1.100	1.090
O3	HO3	0.950	0.968
O4	HO4	0.950	0.967
O6	HO6	0.950	0.967
CS	HS1	1.100	1.090
CS	HS2	1.101	1.090
CS	HS3	1.100	1.090

Bond Angles for BGS

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
S1	C2'	CS	108.8	109.4
S1	C2'	H2'1	109.9	109.5
S1	C2'	H2'2	109.7	109.5
C2'	S1	O2'	109.4	109.0
C2'	S1	C1	103.0	99.4
C2'	S1	O1'	111.6	109.0
CS	C2'	H2'1	109.9	109.4
CS	C2'	H2'2	109.7	109.4
C2'	CS	HS1	109.5	109.5
C2'	CS	HS2	109.5	109.5
C2'	CS	HS3	109.5	109.5
H2'1	C2'	H2'2	108.9	109.5
O2'	S1	C1	110.7	109.0
O2'	S1	O1'	108.3	119.6
C6	C5	C4	111.9	109.3
C6	C5	O5	107.8	109.4
C6	C5	H5	109.2	109.4
C5	C6	O6	115.9	109.4
C5	C6	H61	105.9	109.4
C5	C6	H62	107.4	109.5
C4	C5	O5	110.0	109.8
C4	C5	H5	106.9	109.4
C5	C4	C3	109.2	109.0
C5	C4	O4	110.5	109.6
C5	C4	H4	109.2	109.6
O5	C5	H5	111.1	109.5
C5	O5	C1	112.5	107.6
O6	C6	H61	105.9	109.5
O6	C6	H62	107.4	109.5
C6	O6	HO6	109.5	106.7
H61	C6	H62	114.6	109.4
C1	C2	O2	110.2	109.6
C1	C2	C3	109.0	109.0
C1	C2	H2	109.4	109.7
C2	C1	S1	110.3	109.4
C2	C1	O5	110.3	109.7
C2	C1	H1	107.8	109.4
O2	C2	C3	109.9	109.5
O2	C2	H2	108.5	109.5
C2	O2	HO2	109.5	106.8
C3	C2	H2	109.7	109.5
C2	C3	C4	108.7	108.6
C2	C3	O3	110.1	109.7
C2	C3	H3	109.8	109.7
C3	C4	O4	109.9	109.6
C3	C4	H4	109.7	109.5
C4	C3	O3	110.2	109.6
C4	C3	H3	109.8	109.6
O4	C4	H4	108.4	109.6
C4	O4	HO4	109.5	106.8
S1	C1	O5	107.7	109.4
S1	C1	H1	110.4	109.4
C1	S1	O1'	113.8	109.0
O5	C1	H1	110.3	109.4
O3	C3	H3	108.3	109.6
C3	O3	HO3	109.5	106.8
HS1	CS	HS2	109.5	109.4
HS1	CS	HS3	109.4	109.5
HS2	CS	HS3	109.5	109.5

Torsion Angles for BGS

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
CS	C2'	S1	H2'1	239.7	119.9
CS	C2'	S1	H2'2	120.0	240.0
S1	C2'	CS	HS1	291.3	180.0
S1	C2'	CS	HS2	171.3	300.0
S1	C2'	CS	HS3	51.3	60.1
H2'1	C2'	S1	H2'2	240.3	120.1
O2'	S1	C2'	C1	117.8	113.9
O2'	S1	C2'	O1'	240.2	227.9
C2	C1	S1	C2'	193.4	179.9
C2'	S1	C1	O5	313.9	300.1
C2'	S1	C1	H1	74.4	60.0
C1	S1	C2'	O1'	122.4	114.0
S1	C2'	CS	H2'1	120.3	240.0
S1	C2'	CS	H2'2	240.0	120.1
CS	C2'	S1	O2'	339.8	293.9
CS	C2'	S1	C1	222.1	180.0
CS	C2'	S1	O1'	99.6	66.0
H2'1	C2'	CS	H2'2	119.7	240.0
HS1	CS	C2'	HS2	120.0	240.0
HS1	CS	C2'	HS3	240.0	120.0
HS2	CS	C2'	HS3	120.0	240.0
S1	C2'	H2'1	CS	240.4	120.0
S1	C2'	H2'1	H2'2	120.2	239.9
H2'1	C2'	S1	O2'	100.1	174.0
H2'1	C2'	S1	C1	342.4	60.1
H2'1	C2'	S1	O1'	219.9	306.1
CS	C2'	H2'1	H2'2	239.8	119.9
H2'1	C2'	CS	HS1	171.0	300.0
H2'1	C2'	CS	HS2	51.0	60.0
H2'1	C2'	CS	HS3	291.0	180.0
S1	C2'	H2'2	CS	119.4	240.0
S1	C2'	H2'2	H2'1	239.7	120.1
H2'2	C2'	S1	O2'	219.9	53.9
H2'2	C2'	S1	C1	102.1	300.0
H2'2	C2'	S1	O1'	339.6	186.0
CS	C2'	H2'2	H2'1	120.3	240.1
H2'2	C2'	CS	HS1	51.3	60.0
H2'2	C2'	CS	HS2	291.3	180.0
H2'2	C2'	CS	HS3	171.3	300.0
O2'	S1	C2'	CS	339.8	293.9
O2'	S1	C2'	H2'1	100.1	174.0
O2'	S1	C2'	H2'2	219.9	53.9
C2'	S1	O2'	C1	247.2	252.5
C2'	S1	O2'	O1'	121.8	126.2
C2	C1	S1	O2'	76.6	65.9
O2'	S1	C1	O5	197.1	186.2
O2'	S1	C1	H1	317.6	306.0
C1	S1	O2'	O1'	234.6	233.8
C4	C5	C6	O5	121.1	120.2
C4	C5	C6	H5	241.9	240.2
C6	C5	C4	C3	182.0	178.7
C6	C5	C4	O4	61.0	58.8
C6	C5	C4	H4	301.9	298.5
O5	C5	C6	H5	120.8	120.0
C6	C5	O5	C1	181.5	187.6
O6	C6	C5	H61	117.1	240.0
O6	C6	C5	H62	240.0	120.1
C5	C6	O6	HO6	102.2	179.9
H61	C6	C5	H62	122.9	240.0
C6	C5	C4	O5	240.3	240.0
C6	C5	C4	H5	119.5	119.8
C4	C5	C6	O6	59.6	185.3
C4	C5	C6	H61	302.6	305.3
C4	C5	C6	H62	179.6	65.3
O5	C5	C4	H5	239.2	239.8
C4	C5	O5	C1	59.2	67.7
C2	C3	C4	C5	58.7	53.8
C3	C4	C5	O4	121.0	119.9
C3	C4	C5	H4	240.1	240.2
C5	C4	C3	O3	179.4	173.6
C5	C4	C3	H3	298.5	294.0
O4	C4	C5	H4	119.1	120.3
C5	C4	O4	HO4	167.6	300.0
C6	C5	O5	C4	122.2	120.0
C6	C5	O5	H5	240.4	240.1
O5	C5	C6	O6	298.6	65.1
O5	C5	C6	H61	181.5	185.0
O5	C5	C6	H62	58.6	305.0
C4	C5	O5	H5	118.2	120.1
O5	C5	C4	C3	301.8	298.7
O5	C5	C4	O4	180.8	178.8
O5	C5	C4	H4	61.7	58.5
C2	C1	O5	C5	300.5	292.3
S1	C1	O5	C5	180.1	172.3
C5	O5	C1	H1	59.5	52.4
C6	C5	H5	C4	238.8	240.3
C6	C5	H5	O5	118.7	119.9
H5	C5	C6	O6	177.8	305.1
H5	C5	C6	H61	60.7	65.1
H5	C5	C6	H62	297.8	185.1
C4	C5	H5	O5	239.9	239.6
H5	C5	C4	C3	62.5	58.9
H5	C5	C4	O4	301.5	298.9
H5	C5	C4	H4	182.5	178.7
H5	C5	O5	C1	301.0	307.5
O6	C6	C5	C4	59.6	185.3
O6	C6	C5	O5	298.6	65.1
O6	C6	C5	H5	177.8	305.1
C5	C6	O6	H61	242.9	119.9
C5	C6	O6	H62	120.0	240.0
H61	C6	O6	H62	237.1	120.0
H61	C6	C5	C4	302.6	305.3
H61	C6	C5	O5	181.5	185.0
H61	C6	C5	H5	60.7	65.1
C5	C6	H61	O6	123.6	240.1
C5	C6	H61	H62	241.8	120.0
O6	C6	H61	H62	118.2	239.9
H61	C6	O6	HO6	219.2	60.0
H62	C6	C5	C4	179.6	65.3
H62	C6	C5	O5	58.6	305.0
H62	C6	C5	H5	297.8	185.1
C5	C6	H62	O6	234.8	120.0
C5	C6	H62	H61	117.4	240.0
O6	C6	H62	H61	242.6	120.0
H62	C6	O6	HO6	342.2	300.0
C2'	S1	C1	C2	193.4	179.9
O2'	S1	C1	C2	76.6	65.9
C5	O5	C1	C2	300.5	292.3
O2	C2	C1	C3	120.7	119.9
O2	C2	C1	H2	240.8	239.8
C1	C2	O2	HO2	199.9	180.5
C3	C2	C1	H2	120.0	119.9
C1	C2	C3	C4	301.4	306.1
C1	C2	C3	O3	180.6	186.4
C1	C2	C3	H3	61.4	65.9
S1	C1	C2	O5	118.9	120.0
S1	C1	C2	H1	239.5	240.1
C2	C1	S1	O1'	314.4	293.8
O5	C1	C2	H1	120.5	120.1
C1	C2	O2	C3	239.8	240.5
C1	C2	O2	H2	119.8	120.3
O2	C2	C1	S1	298.3	301.3
O2	C2	C1	O5	179.3	181.3
O2	C2	C1	H1	58.8	61.2
C3	C2	O2	H2	240.0	239.8
O2	C2	C3	C4	180.4	186.3
O2	C2	C3	O3	59.7	66.5
O2	C2	C3	H3	300.5	306.1
C5	C4	C3	C2	58.7	53.8
C1	C2	C3	O2	121.0	119.9
C1	C2	C3	H2	240.2	240.0
C3	C2	C1	S1	177.5	181.4
C3	C2	C1	O5	58.6	61.4
C3	C2	C1	H1	298.1	301.3
O2	C2	C3	H2	119.3	120.1
C3	C2	O2	HO2	320.1	300.0
C2	C3	C4	O4	180.0	173.7
C2	C3	C4	H4	299.1	293.9
C4	C3	C2	O3	120.7	119.7
C4	C3	C2	H3	239.9	240.2
O3	C3	C2	H3	119.2	120.5
C2	C3	O3	HO3	1.2	179.2
C1	C2	H2	O2	239.7	239.8
C1	C2	H2	C3	119.6	119.6
H2	C2	C1	S1	57.5	61.5
H2	C2	C1	O5	298.6	301.5
H2	C2	C1	H1	178.1	181.4
O2	C2	H2	C3	239.9	239.8
H2	C2	O2	HO2	80.1	60.2
H2	C2	C3	C4	61.1	66.1
H2	C2	C3	O3	300.4	306.4
H2	C2	C3	H3	181.2	185.9
C3	C4	C5	O5	301.8	298.7
C3	C4	C5	H5	62.5	58.9
C5	C4	C3	O4	238.6	240.1
C5	C4	C3	H4	119.6	119.9
C4	C3	C2	H2	61.1	66.1
C2	C3	C4	O3	239.3	240.2
C2	C3	C4	H3	120.1	119.8
O4	C4	C3	H4	240.9	239.7
C3	C4	O4	HO4	47.1	180.5
O3	C3	C4	H3	240.8	239.6
C4	C3	O3	HO3	241.3	60.1
O4	C4	C5	O5	180.8	178.8
O4	C4	C5	H5	301.5	298.9
C5	C4	O4	C3	120.5	119.5
C5	C4	O4	H4	240.4	239.7
C3	C4	O4	H4	119.9	120.2
O4	C4	C3	O3	300.7	293.5
O4	C4	C3	H3	59.9	53.8
H4	C4	C5	O5	61.7	58.5
H4	C4	C5	H5	182.5	178.7
C5	C4	H4	C3	240.4	240.5
C5	C4	H4	O4	120.4	120.2
C3	C4	H4	O4	240.0	239.7
H4	C4	C3	O3	59.8	53.8
H4	C4	C3	H3	179.0	174.1
H4	C4	O4	HO4	287.2	60.2
C1	S1	C2'	CS	222.1	180.0
C1	S1	C2'	H2'1	342.4	60.1
C1	S1	C2'	H2'2	102.1	300.0
C2'	S1	C1	O2'	116.8	113.9
C2'	S1	C1	O1'	239.1	246.0
O2'	S1	C1	O1'	122.2	132.1
C5	O5	C1	S1	180.1	172.3
S1	C1	C2	O2	298.3	301.3
S1	C1	C2	C3	177.5	181.4
S1	C1	C2	H2	57.5	61.5
C2	C1	S1	O5	239.5	239.8
C2	C1	S1	H1	119.0	119.9
O5	C1	S1	H1	239.5	240.1
C1	O5	C5	H5	301.0	307.5
O5	C1	C2	O2	179.3	181.3
O5	C1	C2	C3	58.6	61.4
O5	C1	C2	H2	298.6	301.5
C2	C1	O5	S1	120.5	120.1
C2	C1	O5	H1	241.0	239.9
S1	C1	O5	H1	120.5	119.9
O5	C1	S1	O1'	74.9	54.1
H1	C1	C2	O2	58.8	61.2
H1	C1	C2	C3	298.1	301.3
H1	C1	C2	H2	178.1	181.4
C2	C1	H1	S1	239.5	240.1
C2	C1	H1	O5	120.5	120.3
S1	C1	H1	O5	241.0	240.2
H1	C1	S1	O1'	195.4	173.9
O1'	S1	C2'	CS	99.6	66.0
O1'	S1	C2'	H2'1	219.9	306.1
O1'	S1	C2'	H2'2	339.6	186.0
C2'	S1	O1'	O2'	239.6	233.8
C2'	S1	O1'	C1	116.0	107.5
O2'	S1	O1'	C1	236.5	233.8
O1'	S1	C1	O5	74.9	54.1
O1'	S1	C1	H1	195.4	173.9
HO2	O2	C2	C3	320.1	300.0
HO2	O2	C2	H2	80.1	60.2
O3	C3	C2	H2	300.4	306.4
C2	C3	O3	C4	119.9	119.2
C2	C3	O3	H3	239.9	239.5
O3	C3	C4	O4	300.7	293.5
O3	C3	C4	H4	59.8	53.8
C4	C3	O3	H3	120.0	120.4
H3	C3	C2	H2	181.2	185.9
C2	C3	H3	C4	240.6	240.8
C2	C3	H3	O3	120.3	120.5
H3	C3	C4	O4	59.9	53.8
H3	C3	C4	H4	179.0	174.1
C4	C3	H3	O3	239.7	239.7
H3	C3	O3	HO3	121.3	299.7
HO3	O3	C3	H3	121.3	299.7
HO4	O4	C4	H4	287.2	60.2
HO6	O6	C6	H61	219.2	60.0
HO6	O6	C6	H62	342.2	300.0
HS1	CS	C2'	H2'1	171.0	300.0
HS1	CS	C2'	H2'2	51.3	60.0
C2'	CS	HS1	HS2	240.0	120.0
C2'	CS	HS1	HS3	120.0	240.0
HS2	CS	HS1	HS3	240.0	120.0
HS2	CS	C2'	H2'1	51.0	60.0
HS2	CS	C2'	H2'2	291.3	180.0
C2'	CS	HS2	HS1	120.0	240.0
C2'	CS	HS2	HS3	240.0	120.0
HS1	CS	HS2	HS3	120.0	240.0
HS3	CS	C2'	H2'1	291.0	180.0
HS3	CS	C2'	H2'2	171.3	300.0
C2'	CS	HS3	HS1	240.0	120.0
C2'	CS	HS3	HS2	120.0	240.0
HS1	CS	HS3	HS2	240.0	119.9