PDB Chemical Component BGM

Ideal Model

Chemical Description

Name 8-BROMO-2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
Formula C10 H13 Br N5 O7 P
Formal charge 0
Molecular weight 426.117 g/mol
Component type DNA LINKING
Nonstandard Parent Id DG

Chemical features

Atom count 37
Chiral atom count 3
Chiral atoms C4' C1' C3'
Observed leaving atoms OP3 HO3'
Bond count 39
Aromatic bond count 5

Chemical Identifiers

Systematic name (ACDLabs) 8-bromo-2'-deoxyguanosine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-5-(2-amino-8-bromo-6-oxo-1H-purin-9-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=Nc2n([C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3)c(Br)nc2C(=O)N1
SMILES (CACTVS) NC1=Nc2n([CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3)c(Br)nc2C(=O)N1
Stereo SMILES (OpenEye) C1[C@@H]([C@H](O[C@H]1n2c3c(nc2Br)C(=O)NC(=N3)N)COP(=O)(O)O)O
InChI descriptor InChI=1S/C10H13BrN5O7P/c11-9-13-6-7(14-10(12)15-8(6)18)16(9)5-1-3(17)4(23-5)2-22-24(19,20)21/h3-5,17H,1-2H2,(H2,19,20,21)(H3,12,14,15,18)/t3-,4+,5+/m0/s1
InChIKey descriptor KUFMHNJQBUZBPA-VPENINKCSA-N

Status Information

Last modified 2011-06-04
Created 2002-11-21
Release status REL
Model PDB code 1N7A
Processing site RCSB