PDB Chemical Component BGH

Ideal Model

Chemical Description

Name [(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-7-ethanoyl-6-oxidanylidene-1,8-dihydropurin-9-yl)-4-methoxy-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate
Formula C13 H20 N5 O9 P
Formal charge 0
Molecular weight 421.300 g/mol
Component type RNA LINKING
Nonstandard Parent Id G

Chemical features

Atom count 48
Chiral atom count 4
Chiral atoms C1' C2' C3' C4'
Bond count 50
Aromatic bond count 0

Chemical Identifiers

Systematic name (OpenEye OEToolkits) [(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-7-ethanoyl-6-oxidanylidene-1,8-dihydropurin-9-yl)-4-methoxy-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CO[C@@H]1[C@H](O)[C@@H](CO[P](O)(O)=O)O[C@H]1N2CN(C(C)=O)C3=C2N=C(N)NC3=O
SMILES (CACTVS) CO[CH]1[CH](O)[CH](CO[P](O)(O)=O)O[CH]1N2CN(C(C)=O)C3=C2N=C(N)NC3=O
Stereo SMILES (OpenEye) CC(=O)N1CN(C2=C1C(=O)NC(=N2)N)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)OC
InChI descriptor InChI=1S/C13H20N5O9P/c1-5(19)17-4-18(10-7(17)11(21)16-13(14)15-10)12-9(25-2)8(20)6(27-12)3-26-28(22,23)24/h6,8-9,12,20H,3-4H2,1-2H3,(H2,22,23,24)(H3,14,15,16,21)/t6-,8-,9-,12-/m1/s1
InChIKey descriptor RRIGHVHFMJOEOI-WOUKDFQISA-N

Status Information

Last modified 2018-10-20
Created 2017-10-04
Release status REL
Model PDB code 6EK0
Processing site EBI