PDB Chemical Component BGH
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for BGH
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C6' |
O2' |
1.419 |
1.428 |
O2' |
C2' |
1.415 |
1.429 |
N2 |
C2 |
1.472 |
1.371 |
C2' |
C1' |
1.511 |
1.545 |
C2' |
C3' |
1.500 |
1.545 |
C1' |
O4' |
1.425 |
1.445 |
C1' |
N9 |
1.488 |
1.465 |
N3 |
C2 |
1.331 |
1.314 |
N3 |
C4 |
1.330 |
1.343 |
O3' |
C3' |
1.408 |
1.429 |
C4' |
O4' |
1.413 |
1.445 |
C4' |
C3' |
1.485 |
1.544 |
C4' |
C5' |
1.501 |
1.530 |
C2 |
N1 |
1.334 |
1.361 |
C4 |
N9 |
1.324 |
1.383 |
C4 |
C5 |
1.471 |
1.387 |
N9 |
C8 |
1.451 |
1.467 |
C5' |
O5' |
1.404 |
1.430 |
N1 |
C6 |
1.330 |
1.349 |
O5' |
P |
1.590 |
1.610 |
C8 |
N7 |
1.440 |
1.469 |
C5 |
C6 |
1.480 |
1.403 |
C5 |
N7 |
1.347 |
1.409 |
C6 |
O6 |
1.239 |
1.222 |
N7 |
C71 |
1.380 |
1.348 |
P |
OP1 |
1.485 |
1.481 |
P |
OP2 |
1.488 |
1.609 |
C71 |
O71 |
1.213 |
1.213 |
C71 |
C72 |
1.492 |
1.508 |
C1' |
H1 |
1.100 |
1.090 |
C2' |
H2 |
1.100 |
1.090 |
C3' |
H3 |
1.100 |
1.090 |
C4' |
H4 |
1.099 |
1.090 |
C5' |
H5 |
1.100 |
1.090 |
C5' |
H6 |
1.100 |
1.090 |
C8 |
H7 |
1.100 |
1.090 |
N1 |
H8 |
1.000 |
0.970 |
N2 |
H9 |
1.000 |
0.970 |
N2 |
H10 |
1.000 |
0.970 |
O3' |
H11 |
0.950 |
0.966 |
OP2 |
H13 |
0.950 |
0.967 |
C72 |
H14 |
1.100 |
1.089 |
C72 |
H15 |
1.099 |
1.090 |
C72 |
H16 |
1.100 |
1.090 |
C6' |
H17 |
1.100 |
1.090 |
C6' |
H18 |
1.100 |
1.089 |
C6' |
H19 |
1.100 |
1.090 |
P |
OP3 |
1.596 |
1.610 |
C8 |
H20 |
1.100 |
1.090 |
OP3 |
H12 |
0.950 |
0.966 |
Bond Angles for BGH
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O2' |
C2' |
H2 |
113.0 |
110.5 |
C2' |
C1' |
O4' |
104.8 |
104.8 |
C2' |
C1' |
N9 |
109.9 |
110.4 |
C2' |
C1' |
H1 |
109.3 |
110.5 |
C3' |
C2' |
H2 |
111.7 |
110.6 |
C2' |
C3' |
H3 |
108.3 |
110.5 |
N9 |
C1' |
O4' |
112.5 |
110.3 |
C1' |
O4' |
C4' |
111.0 |
105.2 |
O4' |
C1' |
H1 |
110.5 |
110.4 |
C1' |
N9 |
C4 |
127.3 |
126.1 |
C1' |
N9 |
C8 |
116.0 |
126.1 |
N9 |
C1' |
H1 |
109.6 |
110.3 |
N3 |
C4 |
N9 |
134.8 |
130.6 |
O3' |
C3' |
H3 |
109.5 |
110.4 |
C5' |
C4' |
O4' |
109.9 |
110.4 |
O4' |
C4' |
H4 |
113.8 |
110.3 |
C4' |
C3' |
H3 |
108.5 |
110.5 |
C4' |
C5' |
O5' |
107.1 |
109.5 |
C5' |
C4' |
H4 |
112.3 |
110.4 |
C4' |
C5' |
H5 |
110.1 |
109.5 |
C4' |
C5' |
H6 |
110.0 |
109.5 |
C2 |
N1 |
C6 |
123.5 |
120.0 |
C2 |
N1 |
H8 |
118.2 |
120.0 |
C5 |
C4 |
N9 |
106.0 |
110.1 |
C4 |
N9 |
C8 |
116.7 |
107.8 |
C4 |
C5 |
C6 |
117.3 |
118.9 |
C4 |
C5 |
N7 |
103.6 |
109.8 |
N9 |
C8 |
H7 |
112.7 |
110.2 |
N9 |
C8 |
H20 |
112.7 |
110.3 |
C5' |
O5' |
P |
123.0 |
123.0 |
O5' |
C5' |
H5 |
110.1 |
109.5 |
O5' |
C5' |
H6 |
110.1 |
109.5 |
N1 |
C6 |
O6 |
118.5 |
120.6 |
O5' |
P |
OP1 |
109.9 |
109.5 |
O5' |
P |
OP2 |
112.1 |
109.5 |
O5' |
P |
OP3 |
103.2 |
109.5 |
C5 |
N7 |
C8 |
117.5 |
106.7 |
C8 |
N7 |
C71 |
112.7 |
126.7 |
N7 |
C8 |
H7 |
112.7 |
110.3 |
N7 |
C8 |
H20 |
112.6 |
110.2 |
C6 |
C5 |
N7 |
139.0 |
131.3 |
C5 |
C6 |
O6 |
125.6 |
120.6 |
C5 |
N7 |
C71 |
129.8 |
126.6 |
N7 |
C71 |
O71 |
116.1 |
120.0 |
N7 |
C71 |
C72 |
126.1 |
120.0 |
P |
OP2 |
H13 |
109.5 |
114.0 |
C72 |
C71 |
O71 |
117.8 |
120.0 |
C71 |
C72 |
H14 |
109.5 |
109.4 |
C71 |
C72 |
H15 |
109.5 |
109.4 |
C71 |
C72 |
H16 |
109.4 |
109.4 |
H5 |
C5' |
H6 |
109.5 |
109.5 |
H7 |
C8 |
H20 |
109.5 |
110.2 |
H9 |
N2 |
H10 |
120.0 |
120.0 |
H14 |
C72 |
H15 |
109.5 |
109.5 |
H14 |
C72 |
H16 |
109.5 |
109.5 |
H15 |
C72 |
H16 |
109.5 |
109.5 |
H17 |
C6' |
H18 |
109.4 |
109.5 |
H17 |
C6' |
H19 |
109.5 |
109.5 |
H18 |
C6' |
H19 |
109.5 |
109.4 |
P |
OP3 |
H12 |
109.5 |
114.0 |
Torsion Angles for BGH
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C6' |
O2' |
C2' |
H2 |
343.3 |
27.4 |
O2' |
C2' |
C1' |
O4' |
89.8 |
142.7 |
O2' |
C2' |
C1' |
H1 |
331.3 |
23.8 |
C3' |
C2' |
O2' |
H2 |
235.9 |
237.3 |
O2' |
C2' |
C3' |
H3 |
170.8 |
122.7 |
N2 |
C2 |
N1 |
H8 |
359.5 |
0.1 |
N9 |
C1' |
C2' |
O4' |
121.2 |
118.8 |
C2' |
C1' |
O4' |
C4' |
357.5 |
319.5 |
O4' |
C1' |
C2' |
H1 |
118.5 |
118.9 |
C2' |
C1' |
N9 |
C4 |
66.2 |
298.3 |
C2' |
C1' |
N9 |
C8 |
246.2 |
118.2 |
N9 |
C1' |
C2' |
H1 |
239.6 |
237.7 |
O2' |
C2' |
C3' |
H2 |
124.9 |
122.7 |
C3' |
C2' |
C1' |
O4' |
335.4 |
24.0 |
C3' |
C2' |
C1' |
N9 |
96.6 |
142.8 |
C3' |
C2' |
C1' |
H1 |
217.0 |
265.1 |
O3' |
C3' |
C2' |
H3 |
235.8 |
237.4 |
C4' |
C3' |
C2' |
H3 |
114.4 |
118.7 |
C2' |
C1' |
O4' |
N9 |
119.5 |
118.8 |
C2' |
C1' |
O4' |
H1 |
242.4 |
241.0 |
O4' |
C1' |
N9 |
C4 |
182.6 |
53.6 |
O4' |
C1' |
N9 |
C8 |
2.7 |
233.5 |
N9 |
C1' |
O4' |
H1 |
122.9 |
122.2 |
C5' |
C4' |
O4' |
C1' |
141.1 |
159.3 |
C1' |
O4' |
C4' |
H4 |
268.0 |
281.7 |
C2' |
C1' |
N9 |
O4' |
243.6 |
244.6 |
C2' |
C1' |
N9 |
H1 |
120.2 |
122.4 |
N9 |
C1' |
O4' |
C4' |
238.0 |
200.7 |
O4' |
C1' |
N9 |
H1 |
236.6 |
237.8 |
N3 |
C4 |
N9 |
C1' |
0.3 |
359.9 |
C5 |
C4 |
N9 |
C1' |
180.6 |
179.9 |
C4 |
N9 |
C1' |
C8 |
180.0 |
180.1 |
C1' |
N9 |
C8 |
H7 |
297.7 |
61.0 |
C1' |
N9 |
C8 |
H20 |
62.2 |
299.2 |
N3 |
C2 |
N1 |
H8 |
179.4 |
179.8 |
C1' |
N9 |
C4 |
N3 |
0.3 |
359.9 |
C5 |
C4 |
N3 |
N9 |
179.7 |
180.0 |
N3 |
C4 |
N9 |
C8 |
180.3 |
180.0 |
N3 |
C4 |
C5 |
N7 |
179.4 |
180.0 |
O3' |
C3' |
C2' |
H2 |
281.7 |
237.4 |
C2' |
C3' |
O3' |
H3 |
123.6 |
122.6 |
C4' |
C3' |
O3' |
H3 |
240.2 |
237.3 |
C4' |
O4' |
C1' |
H1 |
115.1 |
78.5 |
O4' |
C4' |
C3' |
H3 |
70.6 |
94.7 |
O4' |
C4' |
C5' |
O5' |
35.8 |
66.4 |
C5' |
C4' |
O4' |
H4 |
233.1 |
237.7 |
O4' |
C4' |
C5' |
H5 |
155.5 |
186.4 |
O4' |
C4' |
C5' |
H6 |
276.2 |
306.4 |
C4' |
C3' |
C2' |
H2 |
160.2 |
118.7 |
C2' |
C3' |
C4' |
H3 |
245.8 |
241.3 |
C1' |
O4' |
C4' |
C3' |
28.9 |
40.5 |
O3' |
C3' |
C4' |
H3 |
120.4 |
122.6 |
C1' |
O4' |
C4' |
C5' |
141.1 |
159.3 |
O4' |
C4' |
C5' |
H4 |
127.7 |
122.3 |
C5' |
C4' |
C3' |
H3 |
315.8 |
335.9 |
C4' |
C5' |
O5' |
P |
221.5 |
180.0 |
O5' |
C5' |
C4' |
H5 |
240.4 |
240.0 |
O5' |
C5' |
C4' |
H6 |
119.6 |
120.0 |
H5 |
C5' |
C4' |
H6 |
239.2 |
240.0 |
C2 |
N1 |
C6 |
O6 |
179.6 |
180.0 |
C4 |
N9 |
C1' |
O4' |
182.6 |
53.6 |
C1' |
N9 |
C4 |
C8 |
180.0 |
179.9 |
C4 |
N9 |
C1' |
H1 |
306.0 |
175.8 |
N9 |
C4 |
C5 |
C6 |
180.5 |
180.3 |
N9 |
C4 |
C5 |
N7 |
359.1 |
360.0 |
C4 |
N9 |
C8 |
H7 |
117.7 |
240.9 |
C4 |
N9 |
C8 |
H20 |
242.2 |
119.1 |
C1' |
N9 |
C4 |
C5 |
180.6 |
179.9 |
N3 |
C4 |
C5 |
N9 |
180.2 |
180.0 |
C5 |
C4 |
N9 |
C8 |
0.6 |
0.0 |
C4 |
C5 |
N7 |
C8 |
0.9 |
0.0 |
C6 |
C5 |
C4 |
N7 |
181.4 |
180.3 |
C4 |
C5 |
C6 |
O6 |
180.6 |
180.0 |
C4 |
C5 |
N7 |
C71 |
178.7 |
180.0 |
C8 |
N9 |
C1' |
O4' |
2.7 |
233.5 |
C1' |
N9 |
C8 |
C4 |
180.0 |
180.1 |
C8 |
N9 |
C1' |
H1 |
126.1 |
355.7 |
N9 |
C8 |
N7 |
C71 |
181.3 |
180.0 |
N7 |
C8 |
N9 |
H7 |
242.2 |
119.1 |
N7 |
C8 |
N9 |
H20 |
117.7 |
240.9 |
H7 |
C8 |
N9 |
H20 |
235.5 |
121.8 |
O5' |
C5' |
C4' |
O4' |
35.8 |
66.4 |
O5' |
C5' |
C4' |
H4 |
268.1 |
304.2 |
C4' |
C5' |
O5' |
H5 |
119.6 |
120.0 |
C4' |
C5' |
O5' |
H6 |
240.4 |
240.0 |
C5' |
O5' |
P |
OP1 |
293.2 |
305.0 |
C5' |
O5' |
P |
OP2 |
55.8 |
65.0 |
C5' |
O5' |
P |
OP3 |
175.6 |
185.0 |
H5 |
C5' |
O5' |
H6 |
120.8 |
120.0 |
C2 |
N1 |
C6 |
H8 |
180.0 |
180.1 |
N1 |
C6 |
C5 |
N7 |
180.6 |
179.8 |
C5 |
C6 |
N1 |
O6 |
181.9 |
180.6 |
P |
O5' |
C5' |
H5 |
101.9 |
60.0 |
P |
O5' |
C5' |
H6 |
341.1 |
300.0 |
O5' |
P |
OP2 |
H13 |
237.4 |
60.0 |
O5' |
P |
OP3 |
H12 |
117.3 |
180.0 |
C1' |
N9 |
C8 |
N7 |
179.9 |
180.1 |
C4 |
N9 |
C8 |
N7 |
359.9 |
0.0 |
N9 |
C8 |
N7 |
H7 |
117.8 |
241.0 |
N9 |
C8 |
N7 |
H20 |
242.2 |
119.1 |
C6 |
C5 |
N7 |
C8 |
179.1 |
179.7 |
C5 |
N7 |
C8 |
C71 |
178.1 |
179.9 |
C8 |
N7 |
C71 |
O71 |
40.8 |
174.8 |
C8 |
N7 |
C71 |
C72 |
222.3 |
354.8 |
H7 |
C8 |
N7 |
H20 |
124.4 |
238.2 |
C2 |
N1 |
C6 |
C5 |
1.4 |
0.6 |
C6 |
C5 |
C4 |
N9 |
180.5 |
180.3 |
C4 |
C5 |
C6 |
N7 |
178.0 |
179.6 |
N1 |
C6 |
C5 |
O6 |
178.0 |
179.4 |
C6 |
C5 |
N7 |
C71 |
356.8 |
359.6 |
N7 |
C5 |
C4 |
N9 |
359.1 |
360.0 |
C4 |
C5 |
N7 |
C6 |
181.8 |
180.4 |
C8 |
N7 |
C5 |
C71 |
182.3 |
180.1 |
C5 |
N7 |
C8 |
H7 |
241.6 |
119.0 |
C5 |
N7 |
C8 |
H20 |
117.2 |
240.8 |
N7 |
C5 |
C6 |
O6 |
2.6 |
0.4 |
C5 |
N7 |
C71 |
O71 |
223.0 |
354.9 |
C5 |
N7 |
C71 |
C72 |
44.5 |
174.9 |
O6 |
C6 |
C5 |
N7 |
2.6 |
0.4 |
C5 |
N7 |
C71 |
C8 |
182.2 |
180.1 |
C71 |
N7 |
C8 |
H7 |
63.5 |
299.1 |
C71 |
N7 |
C8 |
H20 |
299.1 |
60.9 |
C72 |
C71 |
N7 |
O71 |
181.5 |
180.0 |
N7 |
C71 |
C72 |
H14 |
178.5 |
5.0 |
N7 |
C71 |
C72 |
H15 |
298.5 |
125.0 |
N7 |
C71 |
C72 |
H16 |
58.5 |
245.0 |
O5' |
P |
OP1 |
OP2 |
123.9 |
120.1 |
O5' |
P |
OP1 |
OP3 |
246.9 |
240.0 |
O5' |
P |
OP2 |
OP1 |
237.4 |
240.0 |
O5' |
P |
OP2 |
OP3 |
115.0 |
120.0 |
N7 |
C71 |
O71 |
C72 |
181.3 |
180.0 |
O71 |
C71 |
C72 |
H14 |
360.0 |
185.0 |
O71 |
C71 |
C72 |
H15 |
120.0 |
305.0 |
O71 |
C71 |
C72 |
H16 |
240.0 |
65.0 |
N7 |
C71 |
C72 |
O71 |
178.5 |
180.0 |
H14 |
C72 |
C71 |
H15 |
240.0 |
240.0 |
H14 |
C72 |
C71 |
H16 |
120.0 |
120.0 |
H15 |
C72 |
C71 |
H16 |
240.0 |
240.0 |
C2' |
C1' |
H1 |
O4' |
114.8 |
115.5 |
C2' |
C1' |
H1 |
N9 |
239.4 |
237.6 |
N9 |
C1' |
H1 |
O4' |
235.4 |
237.8 |
H1 |
C1' |
O4' |
C4' |
115.1 |
78.5 |
H1 |
C1' |
N9 |
C4 |
306.0 |
175.8 |
H1 |
C1' |
N9 |
C8 |
126.1 |
355.7 |
H2 |
C2' |
C1' |
O4' |
216.9 |
265.3 |
H2 |
C2' |
C1' |
N9 |
338.1 |
24.1 |
H2 |
C2' |
C1' |
H1 |
98.5 |
146.4 |
H2 |
C2' |
C3' |
H3 |
45.9 |
360.0 |
H3 |
C3' |
C2' |
H2 |
45.9 |
360.0 |
C5' |
C4' |
H4 |
O4' |
125.6 |
122.3 |
H4 |
C4' |
C3' |
H3 |
192.3 |
213.5 |
H4 |
C4' |
C5' |
O5' |
268.1 |
304.2 |
H4 |
C4' |
C5' |
H5 |
27.8 |
64.2 |
H4 |
C4' |
C5' |
H6 |
148.5 |
184.2 |
H5 |
C5' |
C4' |
O4' |
155.5 |
186.4 |
C4' |
C5' |
H5 |
O5' |
242.2 |
240.0 |
H5 |
C5' |
C4' |
H4 |
27.8 |
64.2 |
C4' |
C5' |
H5 |
H6 |
121.1 |
120.0 |
H5 |
C5' |
O5' |
P |
101.9 |
60.0 |
O5' |
C5' |
H5 |
H6 |
238.9 |
240.0 |
H6 |
C5' |
C4' |
O4' |
276.2 |
306.4 |
C4' |
C5' |
H6 |
O5' |
117.8 |
120.0 |
H6 |
C5' |
C4' |
H4 |
148.5 |
184.2 |
C4' |
C5' |
H6 |
H5 |
238.9 |
240.0 |
H6 |
C5' |
O5' |
P |
341.1 |
300.0 |
O5' |
C5' |
H6 |
H5 |
121.1 |
120.0 |
N9 |
C8 |
H7 |
H20 |
126.2 |
238.1 |
H7 |
C8 |
N7 |
C71 |
63.5 |
299.1 |
N7 |
C8 |
H7 |
H20 |
233.8 |
121.9 |
C2 |
N1 |
H8 |
C6 |
180.0 |
179.9 |
H8 |
N1 |
C6 |
O6 |
359.5 |
359.9 |
H11 |
O3' |
C3' |
H3 |
56.5 |
57.4 |
H14 |
C72 |
C71 |
O71 |
360.0 |
185.0 |
C71 |
C72 |
H14 |
H15 |
120.0 |
119.9 |
C71 |
C72 |
H14 |
H16 |
240.0 |
240.0 |
H15 |
C72 |
H14 |
H16 |
120.0 |
120.1 |
H15 |
C72 |
C71 |
O71 |
120.0 |
305.0 |
C71 |
C72 |
H15 |
H14 |
240.0 |
240.1 |
C71 |
C72 |
H15 |
H16 |
120.0 |
120.0 |
H14 |
C72 |
H15 |
H16 |
240.0 |
239.9 |
H16 |
C72 |
C71 |
O71 |
240.0 |
65.0 |
C71 |
C72 |
H16 |
H14 |
120.0 |
120.0 |
C71 |
C72 |
H16 |
H15 |
240.0 |
240.0 |
H14 |
C72 |
H16 |
H15 |
120.0 |
120.1 |
H18 |
C6' |
H17 |
H19 |
120.0 |
120.0 |
H17 |
C6' |
H18 |
H19 |
240.0 |
240.0 |
H17 |
C6' |
H19 |
H18 |
120.0 |
120.0 |
O5' |
P |
OP3 |
OP1 |
117.4 |
120.0 |
O5' |
P |
OP3 |
OP2 |
239.6 |
240.0 |
OP3 |
P |
OP2 |
H13 |
122.3 |
300.0 |
N9 |
C8 |
H20 |
H7 |
233.8 |
121.9 |
H20 |
C8 |
N7 |
C71 |
299.1 |
60.9 |
N7 |
C8 |
H20 |
H7 |
126.2 |
238.1 |