PDB Chemical Component BGH

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for BGH

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C6' O2' 1.419 1.428
O2' C2' 1.415 1.429
N2 C2 1.472 1.371
C2' C1' 1.511 1.545
C2' C3' 1.500 1.545
C1' O4' 1.425 1.445
C1' N9 1.488 1.465
N3 C2 1.331 1.314
N3 C4 1.330 1.343
O3' C3' 1.408 1.429
C4' O4' 1.413 1.445
C4' C3' 1.485 1.544
C4' C5' 1.501 1.530
C2 N1 1.334 1.361
C4 N9 1.324 1.383
C4 C5 1.471 1.387
N9 C8 1.451 1.467
C5' O5' 1.404 1.430
N1 C6 1.330 1.349
O5' P 1.590 1.610
C8 N7 1.440 1.469
C5 C6 1.480 1.403
C5 N7 1.347 1.409
C6 O6 1.239 1.222
N7 C71 1.380 1.348
P OP1 1.485 1.481
P OP2 1.488 1.609
C71 O71 1.213 1.213
C71 C72 1.492 1.508
C1' H1 1.100 1.090
C2' H2 1.100 1.090
C3' H3 1.100 1.090
C4' H4 1.099 1.090
C5' H5 1.100 1.090
C5' H6 1.100 1.090
C8 H7 1.100 1.090
N1 H8 1.000 0.970
N2 H9 1.000 0.970
N2 H10 1.000 0.970
O3' H11 0.950 0.966
OP2 H13 0.950 0.967
C72 H14 1.100 1.089
C72 H15 1.099 1.090
C72 H16 1.100 1.090
C6' H17 1.100 1.090
C6' H18 1.100 1.089
C6' H19 1.100 1.090
P OP3 1.596 1.610
C8 H20 1.100 1.090
OP3 H12 0.950 0.966

Bond Angles for BGH

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O2' C2' H2 113.0 110.5
C2' C1' O4' 104.8 104.8
C2' C1' N9 109.9 110.4
C2' C1' H1 109.3 110.5
C3' C2' H2 111.7 110.6
C2' C3' H3 108.3 110.5
N9 C1' O4' 112.5 110.3
C1' O4' C4' 111.0 105.2
O4' C1' H1 110.5 110.4
C1' N9 C4 127.3 126.1
C1' N9 C8 116.0 126.1
N9 C1' H1 109.6 110.3
N3 C4 N9 134.8 130.6
O3' C3' H3 109.5 110.4
C5' C4' O4' 109.9 110.4
O4' C4' H4 113.8 110.3
C4' C3' H3 108.5 110.5
C4' C5' O5' 107.1 109.5
C5' C4' H4 112.3 110.4
C4' C5' H5 110.1 109.5
C4' C5' H6 110.0 109.5
C2 N1 C6 123.5 120.0
C2 N1 H8 118.2 120.0
C5 C4 N9 106.0 110.1
C4 N9 C8 116.7 107.8
C4 C5 C6 117.3 118.9
C4 C5 N7 103.6 109.8
N9 C8 H7 112.7 110.2
N9 C8 H20 112.7 110.3
C5' O5' P 123.0 123.0
O5' C5' H5 110.1 109.5
O5' C5' H6 110.1 109.5
N1 C6 O6 118.5 120.6
O5' P OP1 109.9 109.5
O5' P OP2 112.1 109.5
O5' P OP3 103.2 109.5
C5 N7 C8 117.5 106.7
C8 N7 C71 112.7 126.7
N7 C8 H7 112.7 110.3
N7 C8 H20 112.6 110.2
C6 C5 N7 139.0 131.3
C5 C6 O6 125.6 120.6
C5 N7 C71 129.8 126.6
N7 C71 O71 116.1 120.0
N7 C71 C72 126.1 120.0
P OP2 H13 109.5 114.0
C72 C71 O71 117.8 120.0
C71 C72 H14 109.5 109.4
C71 C72 H15 109.5 109.4
C71 C72 H16 109.4 109.4
H5 C5' H6 109.5 109.5
H7 C8 H20 109.5 110.2
H9 N2 H10 120.0 120.0
H14 C72 H15 109.5 109.5
H14 C72 H16 109.5 109.5
H15 C72 H16 109.5 109.5
H17 C6' H18 109.4 109.5
H17 C6' H19 109.5 109.5
H18 C6' H19 109.5 109.4
P OP3 H12 109.5 114.0

Torsion Angles for BGH

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6' O2' C2' H2 343.3 27.4
O2' C2' C1' O4' 89.8 142.7
O2' C2' C1' H1 331.3 23.8
C3' C2' O2' H2 235.9 237.3
O2' C2' C3' H3 170.8 122.7
N2 C2 N1 H8 359.5 0.1
N9 C1' C2' O4' 121.2 118.8
C2' C1' O4' C4' 357.5 319.5
O4' C1' C2' H1 118.5 118.9
C2' C1' N9 C4 66.2 298.3
C2' C1' N9 C8 246.2 118.2
N9 C1' C2' H1 239.6 237.7
O2' C2' C3' H2 124.9 122.7
C3' C2' C1' O4' 335.4 24.0
C3' C2' C1' N9 96.6 142.8
C3' C2' C1' H1 217.0 265.1
O3' C3' C2' H3 235.8 237.4
C4' C3' C2' H3 114.4 118.7
C2' C1' O4' N9 119.5 118.8
C2' C1' O4' H1 242.4 241.0
O4' C1' N9 C4 182.6 53.6
O4' C1' N9 C8 2.7 233.5
N9 C1' O4' H1 122.9 122.2
C5' C4' O4' C1' 141.1 159.3
C1' O4' C4' H4 268.0 281.7
C2' C1' N9 O4' 243.6 244.6
C2' C1' N9 H1 120.2 122.4
N9 C1' O4' C4' 238.0 200.7
O4' C1' N9 H1 236.6 237.8
N3 C4 N9 C1' 0.3 359.9
C5 C4 N9 C1' 180.6 179.9
C4 N9 C1' C8 180.0 180.1
C1' N9 C8 H7 297.7 61.0
C1' N9 C8 H20 62.2 299.2
N3 C2 N1 H8 179.4 179.8
C1' N9 C4 N3 0.3 359.9
C5 C4 N3 N9 179.7 180.0
N3 C4 N9 C8 180.3 180.0
N3 C4 C5 N7 179.4 180.0
O3' C3' C2' H2 281.7 237.4
C2' C3' O3' H3 123.6 122.6
C4' C3' O3' H3 240.2 237.3
C4' O4' C1' H1 115.1 78.5
O4' C4' C3' H3 70.6 94.7
O4' C4' C5' O5' 35.8 66.4
C5' C4' O4' H4 233.1 237.7
O4' C4' C5' H5 155.5 186.4
O4' C4' C5' H6 276.2 306.4
C4' C3' C2' H2 160.2 118.7
C2' C3' C4' H3 245.8 241.3
C1' O4' C4' C3' 28.9 40.5
O3' C3' C4' H3 120.4 122.6
C1' O4' C4' C5' 141.1 159.3
O4' C4' C5' H4 127.7 122.3
C5' C4' C3' H3 315.8 335.9
C4' C5' O5' P 221.5 180.0
O5' C5' C4' H5 240.4 240.0
O5' C5' C4' H6 119.6 120.0
H5 C5' C4' H6 239.2 240.0
C2 N1 C6 O6 179.6 180.0
C4 N9 C1' O4' 182.6 53.6
C1' N9 C4 C8 180.0 179.9
C4 N9 C1' H1 306.0 175.8
N9 C4 C5 C6 180.5 180.3
N9 C4 C5 N7 359.1 360.0
C4 N9 C8 H7 117.7 240.9
C4 N9 C8 H20 242.2 119.1
C1' N9 C4 C5 180.6 179.9
N3 C4 C5 N9 180.2 180.0
C5 C4 N9 C8 0.6 0.0
C4 C5 N7 C8 0.9 0.0
C6 C5 C4 N7 181.4 180.3
C4 C5 C6 O6 180.6 180.0
C4 C5 N7 C71 178.7 180.0
C8 N9 C1' O4' 2.7 233.5
C1' N9 C8 C4 180.0 180.1
C8 N9 C1' H1 126.1 355.7
N9 C8 N7 C71 181.3 180.0
N7 C8 N9 H7 242.2 119.1
N7 C8 N9 H20 117.7 240.9
H7 C8 N9 H20 235.5 121.8
O5' C5' C4' O4' 35.8 66.4
O5' C5' C4' H4 268.1 304.2
C4' C5' O5' H5 119.6 120.0
C4' C5' O5' H6 240.4 240.0
C5' O5' P OP1 293.2 305.0
C5' O5' P OP2 55.8 65.0
C5' O5' P OP3 175.6 185.0
H5 C5' O5' H6 120.8 120.0
C2 N1 C6 H8 180.0 180.1
N1 C6 C5 N7 180.6 179.8
C5 C6 N1 O6 181.9 180.6
P O5' C5' H5 101.9 60.0
P O5' C5' H6 341.1 300.0
O5' P OP2 H13 237.4 60.0
O5' P OP3 H12 117.3 180.0
C1' N9 C8 N7 179.9 180.1
C4 N9 C8 N7 359.9 0.0
N9 C8 N7 H7 117.8 241.0
N9 C8 N7 H20 242.2 119.1
C6 C5 N7 C8 179.1 179.7
C5 N7 C8 C71 178.1 179.9
C8 N7 C71 O71 40.8 174.8
C8 N7 C71 C72 222.3 354.8
H7 C8 N7 H20 124.4 238.2
C2 N1 C6 C5 1.4 0.6
C6 C5 C4 N9 180.5 180.3
C4 C5 C6 N7 178.0 179.6
N1 C6 C5 O6 178.0 179.4
C6 C5 N7 C71 356.8 359.6
N7 C5 C4 N9 359.1 360.0
C4 C5 N7 C6 181.8 180.4
C8 N7 C5 C71 182.3 180.1
C5 N7 C8 H7 241.6 119.0
C5 N7 C8 H20 117.2 240.8
N7 C5 C6 O6 2.6 0.4
C5 N7 C71 O71 223.0 354.9
C5 N7 C71 C72 44.5 174.9
O6 C6 C5 N7 2.6 0.4
C5 N7 C71 C8 182.2 180.1
C71 N7 C8 H7 63.5 299.1
C71 N7 C8 H20 299.1 60.9
C72 C71 N7 O71 181.5 180.0
N7 C71 C72 H14 178.5 5.0
N7 C71 C72 H15 298.5 125.0
N7 C71 C72 H16 58.5 245.0
O5' P OP1 OP2 123.9 120.1
O5' P OP1 OP3 246.9 240.0
O5' P OP2 OP1 237.4 240.0
O5' P OP2 OP3 115.0 120.0
N7 C71 O71 C72 181.3 180.0
O71 C71 C72 H14 360.0 185.0
O71 C71 C72 H15 120.0 305.0
O71 C71 C72 H16 240.0 65.0
N7 C71 C72 O71 178.5 180.0
H14 C72 C71 H15 240.0 240.0
H14 C72 C71 H16 120.0 120.0
H15 C72 C71 H16 240.0 240.0
C2' C1' H1 O4' 114.8 115.5
C2' C1' H1 N9 239.4 237.6
N9 C1' H1 O4' 235.4 237.8
H1 C1' O4' C4' 115.1 78.5
H1 C1' N9 C4 306.0 175.8
H1 C1' N9 C8 126.1 355.7
H2 C2' C1' O4' 216.9 265.3
H2 C2' C1' N9 338.1 24.1
H2 C2' C1' H1 98.5 146.4
H2 C2' C3' H3 45.9 360.0
H3 C3' C2' H2 45.9 360.0
C5' C4' H4 O4' 125.6 122.3
H4 C4' C3' H3 192.3 213.5
H4 C4' C5' O5' 268.1 304.2
H4 C4' C5' H5 27.8 64.2
H4 C4' C5' H6 148.5 184.2
H5 C5' C4' O4' 155.5 186.4
C4' C5' H5 O5' 242.2 240.0
H5 C5' C4' H4 27.8 64.2
C4' C5' H5 H6 121.1 120.0
H5 C5' O5' P 101.9 60.0
O5' C5' H5 H6 238.9 240.0
H6 C5' C4' O4' 276.2 306.4
C4' C5' H6 O5' 117.8 120.0
H6 C5' C4' H4 148.5 184.2
C4' C5' H6 H5 238.9 240.0
H6 C5' O5' P 341.1 300.0
O5' C5' H6 H5 121.1 120.0
N9 C8 H7 H20 126.2 238.1
H7 C8 N7 C71 63.5 299.1
N7 C8 H7 H20 233.8 121.9
C2 N1 H8 C6 180.0 179.9
H8 N1 C6 O6 359.5 359.9
H11 O3' C3' H3 56.5 57.4
H14 C72 C71 O71 360.0 185.0
C71 C72 H14 H15 120.0 119.9
C71 C72 H14 H16 240.0 240.0
H15 C72 H14 H16 120.0 120.1
H15 C72 C71 O71 120.0 305.0
C71 C72 H15 H14 240.0 240.1
C71 C72 H15 H16 120.0 120.0
H14 C72 H15 H16 240.0 239.9
H16 C72 C71 O71 240.0 65.0
C71 C72 H16 H14 120.0 120.0
C71 C72 H16 H15 240.0 240.0
H14 C72 H16 H15 120.0 120.1
H18 C6' H17 H19 120.0 120.0
H17 C6' H18 H19 240.0 240.0
H17 C6' H19 H18 120.0 120.0
O5' P OP3 OP1 117.4 120.0
O5' P OP3 OP2 239.6 240.0
OP3 P OP2 H13 122.3 300.0
N9 C8 H20 H7 233.8 121.9
H20 C8 N7 C71 299.1 60.9
N7 C8 H20 H7 126.2 238.1