PDB Chemical Component BG5
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for BG5
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
1.523 |
1.496 |
C1 |
O1 |
1.234 |
1.355 |
C1 |
O3 |
|
1.222 |
C2 |
C3 |
1.520 |
1.531 |
C2 |
N1 |
1.533 |
1.469 |
C2 |
H2 |
1.115 |
1.095 |
C3 |
C4 |
1.530 |
1.525 |
C3 |
C6 |
1.429 |
1.522 |
C3 |
H3 |
1.115 |
1.098 |
C4 |
C5 |
1.527 |
1.521 |
C4 |
H41 |
1.115 |
1.098 |
C4 |
H42 |
1.116 |
1.096 |
C5 |
N1 |
1.515 |
1.464 |
C5 |
N2 |
1.430 |
1.460 |
C5 |
H5 |
1.115 |
1.094 |
C6 |
H61 |
1.114 |
1.094 |
C6 |
H62 |
1.116 |
1.094 |
C6 |
H63 |
1.115 |
1.094 |
N1 |
HN1 |
1.019 |
1.018 |
O1 |
HO1 |
0.950 |
0.980 |
N2 |
O2 |
1.451 |
1.452 |
N2 |
HN2 |
1.020 |
1.019 |
O2 |
HO2 |
0.950 |
0.973 |
Bond Angles for BG5
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
O1 |
119.4 |
110.7 |
C2 |
C1 |
O3 |
|
125.1 |
C1 |
C2 |
C3 |
111.7 |
111.9 |
C1 |
C2 |
N1 |
113.4 |
108.2 |
C1 |
C2 |
H2 |
104.2 |
108.0 |
O1 |
C1 |
O3 |
|
124.3 |
C1 |
O1 |
HO1 |
119.4 |
111.9 |
C3 |
C2 |
N1 |
106.2 |
106.6 |
C3 |
C2 |
H2 |
111.6 |
112.5 |
C2 |
C3 |
C4 |
105.7 |
103.4 |
C2 |
C3 |
C6 |
105.9 |
113.2 |
C2 |
C3 |
H3 |
115.3 |
110.6 |
N1 |
C2 |
H2 |
109.9 |
109.5 |
C2 |
N1 |
C5 |
108.2 |
108.7 |
C2 |
N1 |
HN1 |
112.7 |
112.9 |
C4 |
C3 |
C6 |
112.8 |
112.7 |
C4 |
C3 |
H3 |
108.7 |
109.0 |
C3 |
C4 |
C5 |
106.8 |
103.4 |
C3 |
C4 |
H41 |
113.2 |
110.5 |
C3 |
C4 |
H42 |
113.2 |
112.0 |
C6 |
C3 |
H3 |
108.5 |
107.8 |
C3 |
C6 |
H61 |
113.6 |
110.6 |
C3 |
C6 |
H62 |
105.9 |
110.6 |
C3 |
C6 |
H63 |
113.6 |
110.5 |
C5 |
C4 |
H41 |
113.2 |
110.0 |
C5 |
C4 |
H42 |
113.2 |
113.3 |
C4 |
C5 |
N1 |
106.5 |
103.0 |
C4 |
C5 |
N2 |
109.7 |
111.9 |
C4 |
C5 |
H5 |
111.0 |
111.3 |
H41 |
C4 |
H42 |
97.3 |
107.6 |
N1 |
C5 |
N2 |
108.7 |
110.9 |
N1 |
C5 |
H5 |
112.0 |
110.7 |
C5 |
N1 |
HN1 |
112.6 |
111.0 |
N2 |
C5 |
H5 |
108.9 |
109.0 |
C5 |
N2 |
O2 |
126.8 |
105.5 |
C5 |
N2 |
HN2 |
106.1 |
110.8 |
H61 |
C6 |
H62 |
113.6 |
108.4 |
H61 |
C6 |
H63 |
96.9 |
108.3 |
H62 |
C6 |
H63 |
113.5 |
108.4 |
O2 |
N2 |
HN2 |
106.1 |
102.1 |
N2 |
O2 |
HO2 |
126.7 |
101.3 |
Torsion Angles for BG5
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1 |
C1 |
C2 |
O3 |
|
180.1 |
C2 |
C1 |
O1 |
HO1 |
180.1 |
179.9 |
C3 |
C2 |
C1 |
N1 |
240.0 |
242.8 |
C3 |
C2 |
C1 |
H2 |
120.6 |
124.4 |
C1 |
C2 |
C3 |
C4 |
100.4 |
132.9 |
C1 |
C2 |
C3 |
C6 |
220.3 |
255.2 |
C1 |
C2 |
C3 |
H3 |
340.3 |
16.3 |
N1 |
C2 |
C1 |
H2 |
240.6 |
241.6 |
C1 |
C2 |
N1 |
C5 |
249.9 |
249.1 |
C1 |
C2 |
N1 |
HN1 |
124.7 |
12.7 |
C2 |
C1 |
O1 |
O3 |
|
179.9 |
O1 |
C1 |
C2 |
C3 |
90.3 |
64.5 |
O1 |
C1 |
C2 |
N1 |
210.3 |
181.6 |
O1 |
C1 |
C2 |
H2 |
329.7 |
300.1 |
C2 |
C1 |
O3 |
O1 |
|
180.2 |
O3 |
C1 |
C2 |
C3 |
|
244.3 |
O3 |
C1 |
C2 |
N1 |
|
1.5 |
O3 |
C1 |
C2 |
H2 |
|
120.0 |
O3 |
C1 |
O1 |
HO1 |
|
0.0 |
C3 |
C2 |
C1 |
O1 |
90.3 |
64.5 |
C3 |
C2 |
C1 |
O3 |
|
244.3 |
C1 |
C2 |
C3 |
N1 |
124.1 |
118.1 |
C1 |
C2 |
C3 |
H2 |
243.8 |
238.1 |
N1 |
C2 |
C3 |
H2 |
119.7 |
120.1 |
C3 |
C2 |
N1 |
C5 |
12.9 |
9.6 |
C3 |
C2 |
N1 |
HN1 |
247.7 |
133.3 |
C4 |
C3 |
C2 |
C6 |
240.0 |
237.7 |
C4 |
C3 |
C2 |
H3 |
120.0 |
116.6 |
C2 |
C3 |
C4 |
C5 |
25.8 |
327.3 |
C2 |
C3 |
C4 |
H41 |
260.6 |
85.0 |
C2 |
C3 |
C4 |
H42 |
151.1 |
205.0 |
C6 |
C3 |
C2 |
H3 |
240.0 |
238.9 |
C2 |
C3 |
C6 |
H61 |
54.7 |
180.0 |
C2 |
C3 |
C6 |
H62 |
180.0 |
300.0 |
C2 |
C3 |
C6 |
H63 |
305.3 |
60.0 |
N1 |
C2 |
C1 |
O1 |
210.3 |
181.6 |
N1 |
C2 |
C1 |
O3 |
|
1.5 |
C1 |
C2 |
N1 |
C3 |
236.9 |
239.5 |
C1 |
C2 |
N1 |
H2 |
116.1 |
117.5 |
C3 |
C2 |
N1 |
H2 |
239.2 |
238.0 |
N1 |
C2 |
C3 |
C4 |
336.3 |
14.8 |
N1 |
C2 |
C3 |
C6 |
96.3 |
137.1 |
N1 |
C2 |
C3 |
H3 |
216.3 |
258.2 |
C4 |
C5 |
N1 |
C2 |
3.0 |
329.8 |
C2 |
N1 |
C5 |
N2 |
121.1 |
89.6 |
C2 |
N1 |
C5 |
H5 |
241.5 |
210.8 |
C5 |
N1 |
C2 |
HN1 |
125.2 |
236.4 |
H2 |
C2 |
C1 |
O1 |
329.7 |
300.1 |
H2 |
C2 |
C1 |
O3 |
|
120.0 |
C1 |
C2 |
H2 |
C3 |
120.7 |
124.0 |
C1 |
C2 |
H2 |
N1 |
238.2 |
242.4 |
C3 |
C2 |
H2 |
N1 |
117.5 |
118.4 |
H2 |
C2 |
C3 |
C4 |
216.6 |
254.7 |
H2 |
C2 |
C3 |
C6 |
336.5 |
17.0 |
H2 |
C2 |
C3 |
H3 |
96.5 |
138.1 |
H2 |
C2 |
N1 |
C5 |
133.8 |
131.6 |
H2 |
C2 |
N1 |
HN1 |
8.5 |
255.2 |
C4 |
C3 |
C2 |
N1 |
336.3 |
14.8 |
C4 |
C3 |
C2 |
H2 |
216.6 |
254.7 |
C2 |
C3 |
C4 |
C6 |
115.3 |
122.6 |
C2 |
C3 |
C4 |
H3 |
235.7 |
242.3 |
C6 |
C3 |
C4 |
H3 |
120.4 |
119.7 |
C4 |
C3 |
C6 |
H61 |
169.9 |
296.9 |
C4 |
C3 |
C6 |
H62 |
295.2 |
56.9 |
C4 |
C3 |
C6 |
H63 |
60.4 |
177.0 |
C5 |
C4 |
C3 |
H41 |
125.3 |
242.3 |
C5 |
C4 |
C3 |
H42 |
234.7 |
122.3 |
C3 |
C4 |
C5 |
N1 |
342.2 |
38.7 |
C3 |
C4 |
C5 |
N2 |
224.8 |
279.6 |
C3 |
C4 |
C5 |
H5 |
104.4 |
157.4 |
H41 |
C4 |
C3 |
H42 |
109.5 |
240.0 |
C6 |
C3 |
C2 |
N1 |
96.3 |
137.1 |
C6 |
C3 |
C2 |
H2 |
336.5 |
17.0 |
C2 |
C3 |
C6 |
C4 |
244.8 |
243.1 |
C2 |
C3 |
C6 |
H3 |
124.4 |
122.7 |
C4 |
C3 |
C6 |
H3 |
239.5 |
239.6 |
C6 |
C3 |
C4 |
C5 |
270.6 |
204.8 |
C6 |
C3 |
C4 |
H41 |
145.3 |
322.5 |
C6 |
C3 |
C4 |
H42 |
35.8 |
82.4 |
H61 |
C6 |
C3 |
H62 |
234.7 |
239.9 |
H61 |
C6 |
C3 |
H63 |
109.5 |
119.9 |
H62 |
C6 |
C3 |
H63 |
234.8 |
240.0 |
H3 |
C3 |
C2 |
N1 |
216.3 |
258.2 |
H3 |
C3 |
C2 |
H2 |
96.5 |
138.1 |
C2 |
C3 |
H3 |
C4 |
118.4 |
113.1 |
C2 |
C3 |
H3 |
C6 |
241.4 |
235.8 |
C4 |
C3 |
H3 |
C6 |
123.0 |
122.7 |
H3 |
C3 |
C4 |
C5 |
150.2 |
85.0 |
H3 |
C3 |
C4 |
H41 |
24.9 |
202.7 |
H3 |
C3 |
C4 |
H42 |
275.4 |
322.7 |
H3 |
C3 |
C6 |
H61 |
290.4 |
57.3 |
H3 |
C3 |
C6 |
H62 |
55.7 |
177.3 |
H3 |
C3 |
C6 |
H63 |
180.9 |
297.4 |
C2 |
N1 |
C5 |
C4 |
3.0 |
329.8 |
C5 |
C4 |
C3 |
C6 |
270.6 |
204.8 |
C5 |
C4 |
C3 |
H3 |
150.2 |
85.0 |
C3 |
C4 |
C5 |
H41 |
234.7 |
118.0 |
C3 |
C4 |
C5 |
H42 |
125.3 |
238.5 |
H41 |
C4 |
C5 |
H42 |
250.5 |
120.5 |
N1 |
C5 |
C4 |
N2 |
117.4 |
119.2 |
N1 |
C5 |
C4 |
H5 |
237.8 |
241.4 |
C4 |
C5 |
N1 |
HN1 |
128.3 |
205.1 |
N2 |
C5 |
C4 |
H5 |
120.4 |
122.2 |
C4 |
C5 |
N2 |
O2 |
87.7 |
190.1 |
C4 |
C5 |
N2 |
HN2 |
322.5 |
300.0 |
H41 |
C4 |
C3 |
C6 |
145.3 |
322.5 |
H41 |
C4 |
C3 |
H3 |
24.9 |
202.7 |
C3 |
C4 |
H41 |
C5 |
121.7 |
246.5 |
C3 |
C4 |
H41 |
H42 |
240.9 |
122.6 |
C5 |
C4 |
H41 |
H42 |
119.1 |
236.1 |
H41 |
C4 |
C5 |
N1 |
107.5 |
280.7 |
H41 |
C4 |
C5 |
N2 |
350.1 |
161.6 |
H41 |
C4 |
C5 |
H5 |
229.6 |
39.3 |
H42 |
C4 |
C3 |
C6 |
35.8 |
82.4 |
H42 |
C4 |
C3 |
H3 |
275.4 |
322.7 |
C3 |
C4 |
H42 |
C5 |
238.3 |
116.5 |
C3 |
C4 |
H42 |
H41 |
119.1 |
238.3 |
C5 |
C4 |
H42 |
H41 |
240.9 |
121.9 |
H42 |
C4 |
C5 |
N1 |
216.9 |
160.2 |
H42 |
C4 |
C5 |
N2 |
99.5 |
41.1 |
H42 |
C4 |
C5 |
H5 |
339.1 |
278.8 |
C5 |
N1 |
C2 |
H2 |
133.8 |
131.6 |
C2 |
N1 |
C5 |
HN1 |
234.8 |
124.8 |
N1 |
C5 |
C4 |
H41 |
107.5 |
280.7 |
N1 |
C5 |
C4 |
H42 |
216.9 |
160.2 |
C4 |
C5 |
N1 |
N2 |
241.9 |
240.2 |
C4 |
C5 |
N1 |
H5 |
121.5 |
119.0 |
N2 |
C5 |
N1 |
H5 |
239.6 |
238.8 |
N1 |
C5 |
N2 |
O2 |
331.7 |
75.8 |
N1 |
C5 |
N2 |
HN2 |
206.4 |
185.6 |
N2 |
C5 |
C4 |
H41 |
350.1 |
161.6 |
N2 |
C5 |
C4 |
H42 |
99.5 |
41.1 |
C4 |
C5 |
N2 |
N1 |
116.1 |
114.4 |
C4 |
C5 |
N2 |
H5 |
238.3 |
236.5 |
N1 |
C5 |
N2 |
H5 |
122.3 |
122.1 |
N2 |
C5 |
N1 |
HN1 |
246.3 |
324.9 |
O2 |
N2 |
C5 |
HN2 |
125.3 |
250.2 |
C5 |
N2 |
O2 |
HO2 |
180.0 |
74.5 |
H5 |
C5 |
C4 |
H41 |
229.6 |
39.3 |
H5 |
C5 |
C4 |
H42 |
339.1 |
278.8 |
C4 |
C5 |
H5 |
N1 |
241.1 |
246.1 |
C4 |
C5 |
H5 |
N2 |
120.9 |
123.8 |
N1 |
C5 |
H5 |
N2 |
239.8 |
237.7 |
H5 |
C5 |
N1 |
HN1 |
6.7 |
86.0 |
H5 |
C5 |
N2 |
O2 |
209.4 |
313.6 |
H5 |
C5 |
N2 |
HN2 |
84.2 |
63.4 |
H61 |
C6 |
C3 |
H3 |
290.4 |
57.3 |
C3 |
C6 |
H61 |
H62 |
121.1 |
121.4 |
C3 |
C6 |
H61 |
H63 |
240.5 |
238.7 |
H62 |
C6 |
H61 |
H63 |
119.4 |
117.4 |
H62 |
C6 |
C3 |
H3 |
55.7 |
177.3 |
C3 |
C6 |
H62 |
H61 |
234.7 |
238.6 |
C3 |
C6 |
H62 |
H63 |
125.3 |
121.3 |
H61 |
C6 |
H62 |
H63 |
250.5 |
242.7 |
H63 |
C6 |
C3 |
H3 |
180.9 |
297.4 |
C3 |
C6 |
H63 |
H61 |
119.5 |
121.3 |
C3 |
C6 |
H63 |
H62 |
238.9 |
238.7 |
H61 |
C6 |
H63 |
H62 |
119.5 |
117.4 |
HN1 |
N1 |
C2 |
H2 |
8.5 |
255.2 |
C2 |
N1 |
HN1 |
C5 |
122.8 |
237.6 |
HN1 |
N1 |
C5 |
N2 |
246.3 |
324.9 |
HN1 |
N1 |
C5 |
H5 |
6.7 |
86.0 |
HO1 |
O1 |
C1 |
O3 |
|
0.0 |
O2 |
N2 |
C5 |
H5 |
209.4 |
313.6 |
C5 |
N2 |
O2 |
HN2 |
234.7 |
115.9 |
HN2 |
N2 |
C5 |
H5 |
84.2 |
63.4 |
C5 |
N2 |
HN2 |
O2 |
137.1 |
248.0 |
HN2 |
N2 |
O2 |
HO2 |
305.3 |
318.6 |
HO2 |
O2 |
N2 |
HN2 |
305.3 |
318.6 |