PDB Chemical Component BG5

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for BG5

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.523 1.496
C1 O1 1.234 1.355
C1 O3   1.222
C2 C3 1.520 1.531
C2 N1 1.533 1.469
C2 H2 1.115 1.095
C3 C4 1.530 1.525
C3 C6 1.429 1.522
C3 H3 1.115 1.098
C4 C5 1.527 1.521
C4 H41 1.115 1.098
C4 H42 1.116 1.096
C5 N1 1.515 1.464
C5 N2 1.430 1.460
C5 H5 1.115 1.094
C6 H61 1.114 1.094
C6 H62 1.116 1.094
C6 H63 1.115 1.094
N1 HN1 1.019 1.018
O1 HO1 0.950 0.980
N2 O2 1.451 1.452
N2 HN2 1.020 1.019
O2 HO2 0.950 0.973

Bond Angles for BG5

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 O1 119.4 110.7
C2 C1 O3   125.1
C1 C2 C3 111.7 111.9
C1 C2 N1 113.4 108.2
C1 C2 H2 104.2 108.0
O1 C1 O3   124.3
C1 O1 HO1 119.4 111.9
C3 C2 N1 106.2 106.6
C3 C2 H2 111.6 112.5
C2 C3 C4 105.7 103.4
C2 C3 C6 105.9 113.2
C2 C3 H3 115.3 110.6
N1 C2 H2 109.9 109.5
C2 N1 C5 108.2 108.7
C2 N1 HN1 112.7 112.9
C4 C3 C6 112.8 112.7
C4 C3 H3 108.7 109.0
C3 C4 C5 106.8 103.4
C3 C4 H41 113.2 110.5
C3 C4 H42 113.2 112.0
C6 C3 H3 108.5 107.8
C3 C6 H61 113.6 110.6
C3 C6 H62 105.9 110.6
C3 C6 H63 113.6 110.5
C5 C4 H41 113.2 110.0
C5 C4 H42 113.2 113.3
C4 C5 N1 106.5 103.0
C4 C5 N2 109.7 111.9
C4 C5 H5 111.0 111.3
H41 C4 H42 97.3 107.6
N1 C5 N2 108.7 110.9
N1 C5 H5 112.0 110.7
C5 N1 HN1 112.6 111.0
N2 C5 H5 108.9 109.0
C5 N2 O2 126.8 105.5
C5 N2 HN2 106.1 110.8
H61 C6 H62 113.6 108.4
H61 C6 H63 96.9 108.3
H62 C6 H63 113.5 108.4
O2 N2 HN2 106.1 102.1
N2 O2 HO2 126.7 101.3

Torsion Angles for BG5

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O1 C1 C2 O3   180.1
C2 C1 O1 HO1 180.1 179.9
C3 C2 C1 N1 240.0 242.8
C3 C2 C1 H2 120.6 124.4
C1 C2 C3 C4 100.4 132.9
C1 C2 C3 C6 220.3 255.2
C1 C2 C3 H3 340.3 16.3
N1 C2 C1 H2 240.6 241.6
C1 C2 N1 C5 249.9 249.1
C1 C2 N1 HN1 124.7 12.7
C2 C1 O1 O3   179.9
O1 C1 C2 C3 90.3 64.5
O1 C1 C2 N1 210.3 181.6
O1 C1 C2 H2 329.7 300.1
C2 C1 O3 O1   180.2
O3 C1 C2 C3   244.3
O3 C1 C2 N1   1.5
O3 C1 C2 H2   120.0
O3 C1 O1 HO1   0.0
C3 C2 C1 O1 90.3 64.5
C3 C2 C1 O3   244.3
C1 C2 C3 N1 124.1 118.1
C1 C2 C3 H2 243.8 238.1
N1 C2 C3 H2 119.7 120.1
C3 C2 N1 C5 12.9 9.6
C3 C2 N1 HN1 247.7 133.3
C4 C3 C2 C6 240.0 237.7
C4 C3 C2 H3 120.0 116.6
C2 C3 C4 C5 25.8 327.3
C2 C3 C4 H41 260.6 85.0
C2 C3 C4 H42 151.1 205.0
C6 C3 C2 H3 240.0 238.9
C2 C3 C6 H61 54.7 180.0
C2 C3 C6 H62 180.0 300.0
C2 C3 C6 H63 305.3 60.0
N1 C2 C1 O1 210.3 181.6
N1 C2 C1 O3   1.5
C1 C2 N1 C3 236.9 239.5
C1 C2 N1 H2 116.1 117.5
C3 C2 N1 H2 239.2 238.0
N1 C2 C3 C4 336.3 14.8
N1 C2 C3 C6 96.3 137.1
N1 C2 C3 H3 216.3 258.2
C4 C5 N1 C2 3.0 329.8
C2 N1 C5 N2 121.1 89.6
C2 N1 C5 H5 241.5 210.8
C5 N1 C2 HN1 125.2 236.4
H2 C2 C1 O1 329.7 300.1
H2 C2 C1 O3   120.0
C1 C2 H2 C3 120.7 124.0
C1 C2 H2 N1 238.2 242.4
C3 C2 H2 N1 117.5 118.4
H2 C2 C3 C4 216.6 254.7
H2 C2 C3 C6 336.5 17.0
H2 C2 C3 H3 96.5 138.1
H2 C2 N1 C5 133.8 131.6
H2 C2 N1 HN1 8.5 255.2
C4 C3 C2 N1 336.3 14.8
C4 C3 C2 H2 216.6 254.7
C2 C3 C4 C6 115.3 122.6
C2 C3 C4 H3 235.7 242.3
C6 C3 C4 H3 120.4 119.7
C4 C3 C6 H61 169.9 296.9
C4 C3 C6 H62 295.2 56.9
C4 C3 C6 H63 60.4 177.0
C5 C4 C3 H41 125.3 242.3
C5 C4 C3 H42 234.7 122.3
C3 C4 C5 N1 342.2 38.7
C3 C4 C5 N2 224.8 279.6
C3 C4 C5 H5 104.4 157.4
H41 C4 C3 H42 109.5 240.0
C6 C3 C2 N1 96.3 137.1
C6 C3 C2 H2 336.5 17.0
C2 C3 C6 C4 244.8 243.1
C2 C3 C6 H3 124.4 122.7
C4 C3 C6 H3 239.5 239.6
C6 C3 C4 C5 270.6 204.8
C6 C3 C4 H41 145.3 322.5
C6 C3 C4 H42 35.8 82.4
H61 C6 C3 H62 234.7 239.9
H61 C6 C3 H63 109.5 119.9
H62 C6 C3 H63 234.8 240.0
H3 C3 C2 N1 216.3 258.2
H3 C3 C2 H2 96.5 138.1
C2 C3 H3 C4 118.4 113.1
C2 C3 H3 C6 241.4 235.8
C4 C3 H3 C6 123.0 122.7
H3 C3 C4 C5 150.2 85.0
H3 C3 C4 H41 24.9 202.7
H3 C3 C4 H42 275.4 322.7
H3 C3 C6 H61 290.4 57.3
H3 C3 C6 H62 55.7 177.3
H3 C3 C6 H63 180.9 297.4
C2 N1 C5 C4 3.0 329.8
C5 C4 C3 C6 270.6 204.8
C5 C4 C3 H3 150.2 85.0
C3 C4 C5 H41 234.7 118.0
C3 C4 C5 H42 125.3 238.5
H41 C4 C5 H42 250.5 120.5
N1 C5 C4 N2 117.4 119.2
N1 C5 C4 H5 237.8 241.4
C4 C5 N1 HN1 128.3 205.1
N2 C5 C4 H5 120.4 122.2
C4 C5 N2 O2 87.7 190.1
C4 C5 N2 HN2 322.5 300.0
H41 C4 C3 C6 145.3 322.5
H41 C4 C3 H3 24.9 202.7
C3 C4 H41 C5 121.7 246.5
C3 C4 H41 H42 240.9 122.6
C5 C4 H41 H42 119.1 236.1
H41 C4 C5 N1 107.5 280.7
H41 C4 C5 N2 350.1 161.6
H41 C4 C5 H5 229.6 39.3
H42 C4 C3 C6 35.8 82.4
H42 C4 C3 H3 275.4 322.7
C3 C4 H42 C5 238.3 116.5
C3 C4 H42 H41 119.1 238.3
C5 C4 H42 H41 240.9 121.9
H42 C4 C5 N1 216.9 160.2
H42 C4 C5 N2 99.5 41.1
H42 C4 C5 H5 339.1 278.8
C5 N1 C2 H2 133.8 131.6
C2 N1 C5 HN1 234.8 124.8
N1 C5 C4 H41 107.5 280.7
N1 C5 C4 H42 216.9 160.2
C4 C5 N1 N2 241.9 240.2
C4 C5 N1 H5 121.5 119.0
N2 C5 N1 H5 239.6 238.8
N1 C5 N2 O2 331.7 75.8
N1 C5 N2 HN2 206.4 185.6
N2 C5 C4 H41 350.1 161.6
N2 C5 C4 H42 99.5 41.1
C4 C5 N2 N1 116.1 114.4
C4 C5 N2 H5 238.3 236.5
N1 C5 N2 H5 122.3 122.1
N2 C5 N1 HN1 246.3 324.9
O2 N2 C5 HN2 125.3 250.2
C5 N2 O2 HO2 180.0 74.5
H5 C5 C4 H41 229.6 39.3
H5 C5 C4 H42 339.1 278.8
C4 C5 H5 N1 241.1 246.1
C4 C5 H5 N2 120.9 123.8
N1 C5 H5 N2 239.8 237.7
H5 C5 N1 HN1 6.7 86.0
H5 C5 N2 O2 209.4 313.6
H5 C5 N2 HN2 84.2 63.4
H61 C6 C3 H3 290.4 57.3
C3 C6 H61 H62 121.1 121.4
C3 C6 H61 H63 240.5 238.7
H62 C6 H61 H63 119.4 117.4
H62 C6 C3 H3 55.7 177.3
C3 C6 H62 H61 234.7 238.6
C3 C6 H62 H63 125.3 121.3
H61 C6 H62 H63 250.5 242.7
H63 C6 C3 H3 180.9 297.4
C3 C6 H63 H61 119.5 121.3
C3 C6 H63 H62 238.9 238.7
H61 C6 H63 H62 119.5 117.4
HN1 N1 C2 H2 8.5 255.2
C2 N1 HN1 C5 122.8 237.6
HN1 N1 C5 N2 246.3 324.9
HN1 N1 C5 H5 6.7 86.0
HO1 O1 C1 O3   0.0
O2 N2 C5 H5 209.4 313.6
C5 N2 O2 HN2 234.7 115.9
HN2 N2 C5 H5 84.2 63.4
C5 N2 HN2 O2 137.1 248.0
HN2 N2 O2 HO2 305.3 318.6
HO2 O2 N2 HN2 305.3 318.6