Atom Nomenclature for BFQ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for BFQ

Atom Name (V3) Atom Name (V2)
P1 P1
O2 O2
O3 O3
O5 O5
C7 C7
P8 P8
O9 O9
O10 O10
O12 O12
O14 O14
C16 C16
C19 C19
N22 N22
C23 C23
C26 C26
C29 C29
C32 C32
C35 C35
C39 C39
HO2 HO2
HO3 HO3
HO10 HO10
HO12 HO12
HO14 HO14
H161 1H16
H162 2H16
H191 1H19
H192 2H19
H231 1H23
H232 2H23
H261 1H26
H262 2H26
H291 1H29
H292 2H29
H321 1H32
H322 2H32
H351 1H35
H352 2H35
H353 3H35
H391 1H39
H392 2H39
H393 3H39