PDB Chemical Component BFD
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for BFD
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N |
CA |
1.443 |
|
N |
H |
1.020 |
|
N |
H2 |
1.019 |
|
CA |
C |
1.570 |
|
CA |
CB |
1.540 |
|
CA |
HA |
1.115 |
|
C |
O |
1.230 |
|
C |
OXT |
1.327 |
|
CB |
CG |
1.521 |
|
CB |
HB2 |
1.115 |
|
CB |
HB3 |
1.114 |
|
CG |
OD1 |
1.259 |
|
CG |
OD2 |
1.249 |
|
OD1 |
BE |
1.532 |
|
OXT |
HXT |
0.950 |
|
BE |
F1 |
1.509 |
|
BE |
F2 |
1.514 |
|
BE |
F3 |
1.521 |
|
Bond Angles for BFD
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
CA |
N |
H |
104.3 |
|
CA |
N |
H2 |
114.2 |
|
N |
CA |
C |
104.3 |
|
N |
CA |
CB |
108.7 |
|
N |
CA |
HA |
113.8 |
|
H |
N |
H2 |
114.2 |
|
C |
CA |
CB |
111.3 |
|
C |
CA |
HA |
111.5 |
|
CA |
C |
O |
122.0 |
|
CA |
C |
OXT |
116.7 |
|
CB |
CA |
HA |
107.2 |
|
CA |
CB |
CG |
112.8 |
|
CA |
CB |
HB2 |
111.0 |
|
CA |
CB |
HB3 |
111.0 |
|
O |
C |
OXT |
121.3 |
|
C |
OXT |
HXT |
116.8 |
|
CG |
CB |
HB2 |
111.0 |
|
CG |
CB |
HB3 |
111.0 |
|
CB |
CG |
OD1 |
117.4 |
|
CB |
CG |
OD2 |
115.8 |
|
HB2 |
CB |
HB3 |
99.4 |
|
OD1 |
CG |
OD2 |
126.7 |
|
CG |
OD1 |
BE |
129.9 |
|
OD1 |
BE |
F1 |
106.8 |
|
OD1 |
BE |
F2 |
114.6 |
|
OD1 |
BE |
F3 |
108.2 |
|
F1 |
BE |
F2 |
107.6 |
|
F1 |
BE |
F3 |
110.2 |
|
F2 |
BE |
F3 |
109.4 |
|
Torsion Angles for BFD
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
H |
N |
CA |
H2 |
125.3 |
|
C |
CA |
N |
CB |
118.8 |
|
C |
CA |
N |
HA |
238.3 |
|
N |
CA |
C |
O |
339.3 |
|
N |
CA |
C |
OXT |
158.6 |
|
CB |
CA |
N |
HA |
119.5 |
|
N |
CA |
CB |
CG |
164.9 |
|
N |
CA |
CB |
HB2 |
290.1 |
|
N |
CA |
CB |
HB3 |
39.6 |
|
CA |
N |
H |
H2 |
234.7 |
|
H |
N |
CA |
C |
180.0 |
|
H |
N |
CA |
CB |
61.2 |
|
H |
N |
CA |
HA |
301.7 |
|
CA |
N |
H2 |
H |
119.9 |
|
H2 |
N |
CA |
C |
54.7 |
|
H2 |
N |
CA |
CB |
295.9 |
|
H2 |
N |
CA |
HA |
176.4 |
|
C |
CA |
N |
H |
180.0 |
|
C |
CA |
N |
H2 |
54.7 |
|
N |
CA |
C |
CB |
242.9 |
|
N |
CA |
C |
HA |
123.3 |
|
CB |
CA |
C |
HA |
240.4 |
|
C |
CA |
CB |
CG |
50.5 |
|
C |
CA |
CB |
HB2 |
175.7 |
|
C |
CA |
CB |
HB3 |
285.2 |
|
O |
C |
CA |
OXT |
180.7 |
|
CA |
C |
OXT |
HXT |
180.1 |
|
CB |
CA |
N |
H |
61.2 |
|
CB |
CA |
N |
H2 |
295.9 |
|
N |
CA |
CB |
C |
114.4 |
|
N |
CA |
CB |
HA |
236.5 |
|
C |
CA |
CB |
HA |
122.1 |
|
CB |
CA |
C |
O |
96.4 |
|
CB |
CA |
C |
OXT |
275.7 |
|
CG |
CB |
CA |
HB2 |
234.8 |
|
CG |
CB |
CA |
HB3 |
125.3 |
|
CA |
CB |
CG |
OD1 |
56.8 |
|
CA |
CB |
CG |
OD2 |
239.6 |
|
HB2 |
CB |
CA |
HB3 |
250.5 |
|
HA |
CA |
N |
H |
301.7 |
|
HA |
CA |
N |
H2 |
176.4 |
|
N |
CA |
HA |
C |
242.3 |
|
N |
CA |
HA |
CB |
120.3 |
|
C |
CA |
HA |
CB |
238.0 |
|
HA |
CA |
C |
O |
216.0 |
|
HA |
CA |
C |
OXT |
35.3 |
|
HA |
CA |
CB |
CG |
288.4 |
|
HA |
CA |
CB |
HB2 |
53.6 |
|
HA |
CA |
CB |
HB3 |
163.1 |
|
O |
C |
CA |
CB |
96.4 |
|
O |
C |
CA |
HA |
216.0 |
|
CA |
C |
O |
OXT |
179.3 |
|
O |
C |
OXT |
HXT |
359.4 |
|
OXT |
C |
CA |
CB |
275.7 |
|
OXT |
C |
CA |
HA |
35.3 |
|
CA |
C |
OXT |
O |
180.7 |
|
CG |
CB |
CA |
HA |
288.4 |
|
CA |
CB |
CG |
HB2 |
125.2 |
|
CA |
CB |
CG |
HB3 |
234.7 |
|
HB2 |
CB |
CG |
HB3 |
109.5 |
|
OD1 |
CG |
CB |
OD2 |
177.2 |
|
CB |
CG |
OD1 |
BE |
190.5 |
|
HB2 |
CB |
CA |
HA |
53.6 |
|
CA |
CB |
HB2 |
CG |
233.7 |
|
CA |
CB |
HB2 |
HB3 |
116.8 |
|
CG |
CB |
HB2 |
HB3 |
243.1 |
|
HB2 |
CB |
CG |
OD1 |
291.6 |
|
HB2 |
CB |
CG |
OD2 |
114.4 |
|
HB3 |
CB |
CA |
HA |
163.1 |
|
CA |
CB |
HB3 |
CG |
126.3 |
|
CA |
CB |
HB3 |
HB2 |
243.2 |
|
CG |
CB |
HB3 |
HB2 |
116.9 |
|
HB3 |
CB |
CG |
OD1 |
182.1 |
|
HB3 |
CB |
CG |
OD2 |
4.9 |
|
OD1 |
CG |
CB |
HB2 |
291.6 |
|
OD1 |
CG |
CB |
HB3 |
182.1 |
|
CB |
CG |
OD1 |
OD2 |
183.1 |
|
CG |
OD1 |
BE |
F1 |
218.4 |
|
CG |
OD1 |
BE |
F2 |
337.4 |
|
CG |
OD1 |
BE |
F3 |
99.7 |
|
OD2 |
CG |
CB |
HB2 |
114.4 |
|
OD2 |
CG |
CB |
HB3 |
4.9 |
|
CB |
CG |
OD2 |
OD1 |
176.9 |
|
OD2 |
CG |
OD1 |
BE |
7.4 |
|
BE |
OD1 |
CG |
OD2 |
7.4 |
|
F1 |
BE |
OD1 |
F2 |
241.0 |
|
F1 |
BE |
OD1 |
F3 |
118.7 |
|
F2 |
BE |
OD1 |
F3 |
237.7 |
|
OD1 |
BE |
F1 |
F2 |
123.5 |
|
OD1 |
BE |
F1 |
F3 |
242.7 |
|
F2 |
BE |
F1 |
F3 |
119.2 |
|
OD1 |
BE |
F2 |
F1 |
241.4 |
|
OD1 |
BE |
F2 |
F3 |
121.7 |
|
F1 |
BE |
F2 |
F3 |
240.3 |
|
OD1 |
BE |
F3 |
F1 |
116.5 |
|
OD1 |
BE |
F3 |
F2 |
234.6 |
|
F1 |
BE |
F3 |
F2 |
118.1 |
|