PDB Chemical Component BDP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for BDP

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.526	1.532
C1	O5	1.390	1.429
C1	O1	1.424	1.430
C1	H1	1.101	1.090
C2	C3	1.516	1.532
C2	O2	1.416	1.428
C2	H2	1.100	1.091
C3	C4	1.525	1.531
C3	O3	1.418	1.429
C3	H3	1.100	1.090
C4	C5	1.513	1.531
C4	O4	1.402	1.429
C4	H4	1.100	1.089
C5	C6	1.527	1.506
C5	O5	1.402	1.429
C5	H5	1.100	1.091
C6	O6A	1.231	1.208
C6	O6B	1.246	1.342
O2	HO2	0.950	0.968
O3	HO3	0.950	0.966
O4	HO4	0.950	0.967
O1	HO1	0.950	0.966
O6B	HO6B	0.950	0.967

Bond Angles for BDP

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O5	111.7	109.4
C2	C1	O1	103.0	109.5
C2	C1	H1	110.3	109.5
C1	C2	C3	113.0	109.1
C1	C2	O2	106.1	109.5
C1	C2	H2	110.5	109.5
O5	C1	O1	103.0	109.5
O5	C1	H1	110.3	109.5
C1	O5	C5	118.3	114.1
O1	C1	H1	118.1	109.5
C1	O1	HO1	109.5	114.0
C3	C2	O2	112.5	109.6
C3	C2	H2	103.8	109.5
C2	C3	C4	107.7	109.1
C2	C3	O3	107.4	109.5
C2	C3	H3	112.1	109.5
O2	C2	H2	111.0	109.6
C2	O2	HO2	109.5	114.0
C4	C3	O3	109.8	109.5
C4	C3	H3	109.7	109.6
C3	C4	C5	108.7	109.2
C3	C4	O4	111.2	109.5
C3	C4	H4	108.3	109.6
O3	C3	H3	110.1	109.6
C3	O3	HO3	109.5	114.0
C5	C4	O4	107.9	109.5
C5	C4	H4	111.6	109.5
C4	C5	C6	113.9	109.5
C4	C5	O5	109.6	109.4
C4	C5	H5	104.3	109.5
O4	C4	H4	109.1	109.6
C4	O4	HO4	109.5	114.0
C6	C5	O5	101.9	109.5
C6	C5	H5	111.7	109.5
C5	C6	O6A	116.6	120.0
C5	C6	O6B	118.3	120.0
O5	C5	H5	115.8	109.5
O6A	C6	O6B	125.0	120.0
C6	O6B	HO6B	109.5	117.0

Torsion Angles for BDP

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O5	C1	C2	O1	250.1	240.0
O5	C1	C2	H1	123.1	120.0
C2	C1	O5	C5	310.5	298.8
O1	C1	C2	H1	233.1	240.0
C2	C1	O1	HO1	180.0	180.0
C3	C2	C1	O2	236.2	240.1
C3	C2	C1	H2	115.8	119.9
C1	C2	C3	C4	307.6	303.0
C1	C2	C3	O3	189.4	183.2
C1	C2	C3	H3	68.4	62.9
O2	C2	C1	H2	239.6	239.8
C1	C2	O2	HO2	180.0	60.0
C2	C1	O5	O1	109.9	120.0
C2	C1	O5	H1	236.9	240.0
O5	C1	C2	C3	46.4	57.6
O5	C1	C2	O2	170.1	177.5
O5	C1	C2	H2	290.6	297.7
O1	C1	O5	H1	127.0	120.0
O5	C1	O1	HO1	296.3	299.9
C4	C5	O5	C1	57.3	61.2
C6	C5	O5	C1	178.3	181.2
C1	O5	C5	H5	299.7	301.2
C2	C1	O1	O5	243.7	240.1
C2	C1	O1	H1	121.9	120.0
O1	C1	C2	C3	156.3	177.6
O1	C1	C2	O2	280.1	297.5
O1	C1	C2	H2	40.5	57.7
O5	C1	O1	H1	238.1	239.9
O1	C1	O5	C5	200.6	178.9
C2	C1	H1	O5	123.9	120.0
C2	C1	H1	O1	242.0	240.0
H1	C1	C2	C3	283.3	297.6
H1	C1	C2	O2	47.0	57.5
H1	C1	C2	H2	167.5	177.7
O5	C1	H1	O1	118.1	120.1
H1	C1	O5	C5	73.6	58.8
H1	C1	O1	HO1	58.2	60.0
C3	C2	C1	O5	46.4	57.6
C3	C2	C1	O1	156.3	177.6
C3	C2	C1	H1	283.3	297.6
C1	C2	C3	O2	120.1	119.9
C1	C2	C3	H2	240.2	240.2
O2	C2	C3	H2	120.1	120.2
C3	C2	O2	HO2	304.1	179.7
C4	C3	C2	O3	118.2	119.9
C4	C3	C2	H3	239.2	240.1
C2	C3	C4	C5	58.9	57.0
C2	C3	C4	O4	177.6	176.9
C2	C3	C4	H4	297.5	297.1
O3	C3	C2	H3	121.0	120.3
C2	C3	O3	HO3	180.0	300.0
O2	C2	C1	O5	170.1	177.5
O2	C2	C1	O1	280.1	297.5
O2	C2	C1	H1	47.0	57.5
C1	C2	O2	C3	235.9	240.3
C1	C2	O2	H2	120.1	120.1
C3	C2	O2	H2	244.2	239.8
O2	C2	C3	C4	187.4	183.1
O2	C2	C3	O3	69.2	63.2
O2	C2	C3	H3	308.2	303.0
H2	C2	C1	O5	290.6	297.7
H2	C2	C1	O1	40.5	57.7
H2	C2	C1	H1	167.5	177.7
C1	C2	H2	C3	121.5	119.6
C1	C2	H2	O2	242.6	239.8
C3	C2	H2	O2	121.1	120.2
H2	C2	C3	C4	67.3	62.8
H2	C2	C3	O3	309.1	303.0
H2	C2	C3	H3	188.1	182.7
H2	C2	O2	HO2	59.9	299.9
C4	C3	C2	O2	187.4	183.1
C4	C3	C2	H2	67.3	62.8
C2	C3	C4	O3	243.4	240.2
C2	C3	C4	H3	122.3	119.9
O3	C3	C4	H3	238.9	239.7
C4	C3	O3	HO3	63.2	180.4
C5	C4	C3	O4	241.3	240.1
C5	C4	C3	H4	121.4	119.9
C3	C4	C5	C6	186.2	182.4
C3	C4	C5	O5	299.6	302.4
C3	C4	C5	H5	64.2	62.3
O4	C4	C3	H4	240.1	239.8
C3	C4	O4	HO4	214.0	180.0
O3	C3	C2	O2	69.2	63.2
O3	C3	C2	H2	309.1	303.0
C2	C3	O3	C4	116.8	119.5
C2	C3	O3	H3	237.7	239.8
C4	C3	O3	H3	120.9	120.3
O3	C3	C4	C5	175.5	176.8
O3	C3	C4	O4	294.3	296.7
O3	C3	C4	H4	54.1	56.9
H3	C3	C2	O2	308.2	303.0
H3	C3	C2	H2	188.1	182.7
C2	C3	H3	C4	240.4	240.4
C2	C3	H3	O3	119.4	120.2
C4	C3	H3	O3	239.0	239.7
H3	C3	C4	C5	296.6	297.1
H3	C3	C4	O4	55.4	57.0
H3	C3	C4	H4	175.2	177.2
H3	C3	O3	HO3	302.3	60.2
C1	O5	C5	C4	57.3	61.2
C5	C4	C3	O3	175.5	176.8
C5	C4	C3	H3	296.6	297.1
C3	C4	C5	O4	120.8	119.9
C3	C4	C5	H4	240.6	240.0
O4	C4	C5	H4	119.8	120.1
C5	C4	O4	HO4	333.2	299.7
C6	C5	C4	O5	246.6	240.0
C6	C5	C4	H5	122.0	120.1
C4	C5	C6	O6A	278.9	115.0
C4	C5	C6	O6B	101.5	295.0
O5	C5	C4	H5	235.4	240.0
O4	C4	C3	O3	294.3	296.7
O4	C4	C3	H3	55.4	57.0
C3	C4	O4	C5	240.8	240.3
C3	C4	O4	H4	119.4	120.2
C5	C4	O4	H4	238.6	239.9
O4	C4	C5	C6	65.4	62.5
O4	C4	C5	O5	178.8	182.5
O4	C4	C5	H5	303.4	302.4
H4	C4	C3	O3	54.1	56.9
H4	C4	C3	H3	175.2	177.2
C3	C4	H4	C5	119.6	119.7
C3	C4	H4	O4	238.8	239.8
C5	C4	H4	O4	119.2	120.1
H4	C4	C5	C6	305.6	302.4
H4	C4	C5	O5	59.0	62.3
H4	C4	C5	H5	183.6	182.3
H4	C4	O4	HO4	94.6	59.8
C1	O5	C5	C6	178.3	181.2
C6	C5	C4	O4	65.4	62.5
C6	C5	C4	H4	305.6	302.4
C4	C5	C6	O5	117.9	119.9
C4	C5	C6	H5	242.2	240.0
O5	C5	C6	H5	124.3	120.0
O6A	C6	C5	O6B	177.4	180.0
C5	C6	O6B	HO6B	177.1	180.0
C5	O5	C1	O1	200.6	178.9
C5	O5	C1	H1	73.6	58.8
O5	C5	C4	O4	178.8	182.5
O5	C5	C4	H4	59.0	62.3
C4	C5	O5	C6	239.0	240.0
C4	C5	O5	H5	117.6	120.0
C6	C5	O5	H5	238.6	240.0
O5	C5	C6	O6A	160.9	355.1
O5	C5	C6	O6B	343.6	175.1
H5	C5	C4	O4	303.4	302.4
H5	C5	C4	H4	183.6	182.3
C4	C5	H5	C6	123.4	120.1
C4	C5	H5	O5	239.5	240.1
C6	C5	H5	O5	116.1	120.0
H5	C5	C6	O6A	36.7	235.0
H5	C5	C6	O6B	219.3	55.0
O6A	C6	C5	O5	160.9	355.1
O6A	C6	C5	H5	36.7	235.0
C5	C6	O6A	O6B	182.8	180.0
O6A	C6	O6B	HO6B	360.0	360.0
O6B	C6	C5	O5	343.6	175.1
O6B	C6	C5	H5	219.3	55.0
C5	C6	O6B	O6A	177.1	180.0
HO2	O2	C2	H2	59.9	299.9
HO3	O3	C3	H3	302.3	60.2
HO4	O4	C4	H4	94.6	59.8
HO1	O1	C1	H1	58.2	60.0