PDB Chemical Component BDJ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for BDJ

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	N1	1.348	1.372
C1	N2	1.347	1.374
C1	N3	1.328	1.302
N1	C3	1.452	1.472
N1	H1	1.000	0.971
O1	C2	1.234	1.213
C2	N2	1.343	1.346
C2	C3	1.524	1.513
N2	C6	1.461	1.465
C3	C4	1.534	1.530
C3	C5	1.550	1.530
N3	H2	1.000	0.970
C4	H3	1.100	1.089
C4	H4	1.100	1.090
C4	H5	1.100	1.091
C5	H6	1.100	1.091
C5	H7	1.100	1.090
C5	H8	1.100	1.090
C6	C7	1.515	1.506
C6	H9	1.100	1.090
C6	H10	1.100	1.090
C7	C8	1.427	1.382
C7	C12	1.428	1.383
C8	C9	1.427	1.383
C8	H11	1.080	1.080
C9	C10	1.421	1.382
C9	H12	1.080	1.080
C10	C11	1.420	1.383
C10	H13	1.080	1.080
C11	C12	1.427	1.384
C11	CL1	1.726	1.736
C12	H14	1.080	1.080

Bond Angles for BDJ

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
N1	C1	N2	113.9	111.2
N1	C1	N3	123.8	124.4
C1	N1	C3	106.6	106.6
C1	N1	H1	126.7	126.7
N2	C1	N3	122.3	124.3
C1	N2	C2	109.0	111.2
C1	N2	C6	125.5	124.4
C1	N3	H2	112.0	120.0
C3	N1	H1	126.7	126.7
N1	C3	C2	103.0	104.4
N1	C3	C4	111.2	110.4
N1	C3	C5	111.6	110.5
O1	C2	N2	127.5	126.7
O1	C2	C3	125.0	126.8
N2	C2	C3	107.5	106.5
C2	N2	C6	125.5	124.4
C2	C3	C4	106.0	110.5
C2	C3	C5	108.3	110.5
N2	C6	C7	110.0	109.5
N2	C6	H9	109.3	109.4
N2	C6	H10	109.3	109.5
C4	C3	C5	115.6	110.5
C3	C4	H3	109.5	109.5
C3	C4	H4	109.5	109.5
C3	C4	H5	109.4	109.5
C3	C5	H6	109.5	109.5
C3	C5	H7	109.5	109.5
C3	C5	H8	109.5	109.5
H3	C4	H4	109.5	109.5
H3	C4	H5	109.4	109.5
H4	C4	H5	109.5	109.4
H6	C5	H7	109.5	109.4
H6	C5	H8	109.4	109.5
H7	C5	H8	109.5	109.5
C7	C6	H9	109.3	109.5
C7	C6	H10	109.3	109.5
C6	C7	C8	120.0	120.0
C6	C7	C12	120.4	120.0
H9	C6	H10	109.7	109.4
C8	C7	C12	119.6	120.0
C7	C8	C9	120.2	120.0
C7	C8	H11	119.9	120.0
C7	C12	C11	120.0	120.0
C7	C12	H14	120.0	120.0
C9	C8	H11	119.9	120.0
C8	C9	C10	120.0	120.0
C8	C9	H12	120.0	120.0
C10	C9	H12	120.0	120.0
C9	C10	C11	120.1	120.0
C9	C10	H13	119.9	120.0
C11	C10	H13	120.0	120.0
C10	C11	C12	120.2	120.0
C10	C11	CL1	119.5	120.1
C12	C11	CL1	120.3	120.0
C11	C12	H14	120.0	120.1

Torsion Angles for BDJ

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
N2	C1	N1	N3	179.9	180.3
N1	C1	N2	C2	0.3	0.0
N1	C1	N2	C6	179.7	180.0
N1	C1	N3	H2	179.9	180.0
C3	N1	C1	H1	180.0	180.1
C1	N1	C3	C2	359.9	360.0
C1	N1	C3	C4	113.1	118.7
C1	N1	C3	C5	243.9	241.2
N1	C1	N2	N3	180.1	179.7
N2	C1	N1	C3	359.9	360.0
N2	C1	N1	H1	180.0	179.9
N2	C1	N3	H2	0.0	359.7
O1	C2	N2	C1	180.0	180.0
C1	N2	C2	C3	359.7	360.0
C2	N2	C1	C6	180.5	180.1
C1	N2	C6	C7	272.6	90.1
C1	N2	C6	H9	32.6	210.1
C1	N2	C6	H10	152.6	330.0
N1	C1	N3	N2	179.9	180.3
N3	C1	N1	C3	180.0	179.7
N3	C1	N1	H1	0.0	359.6
N3	C1	N2	C2	180.2	180.3
N3	C1	N2	C6	359.6	0.2
C3	N1	C1	N2	359.9	360.0
C3	N1	C1	N3	180.0	179.7
C1	N1	C3	H1	180.0	179.9
O1	C2	C3	N1	179.9	180.0
N2	C2	C3	N1	0.3	0.0
C2	C3	N1	C4	246.8	241.3
C2	C3	N1	C5	116.0	118.8
C4	C3	N1	C5	229.3	237.5
N1	C3	C4	H3	180.0	61.4
N1	C3	C4	H4	300.0	181.5
N1	C3	C4	H5	60.0	301.5
N1	C3	C5	H6	180.0	58.6
N1	C3	C5	H7	300.0	178.5
N1	C3	C5	H8	60.0	298.6
H1	N1	C1	N2	180.0	179.9
H1	N1	C1	N3	0.0	359.6
C1	N1	H1	C3	180.0	180.1
H1	N1	C3	C2	179.9	180.1
H1	N1	C3	C4	293.1	298.8
H1	N1	C3	C5	63.8	61.3
C1	N2	C2	O1	180.0	180.0
N1	C3	C2	O1	179.9	180.0
N2	C2	O1	C3	179.6	180.0
O1	C2	N2	C6	0.6	0.1
O1	C2	C3	C4	62.9	61.3
O1	C2	C3	C5	298.3	298.7
C2	N2	C1	N3	180.2	180.3
C1	N2	C2	C6	179.5	179.9
N1	C3	C2	N2	0.3	0.0
O1	C2	N2	C3	180.4	180.0
N2	C2	C3	C4	243.3	241.3
N2	C2	C3	C5	118.6	118.8
C2	N2	C6	C7	92.0	270.0
C2	N2	C6	H9	212.0	30.0
C2	N2	C6	H10	332.0	149.9
C2	C3	N1	H1	179.9	180.1
N1	C3	C2	C4	117.0	118.7
N1	C3	C2	C5	241.6	241.2
O1	C2	C3	N2	179.7	180.0
C3	C2	N2	C6	180.2	180.0
C4	C3	C2	C5	124.7	122.5
C2	C3	C4	H3	291.3	176.4
C2	C3	C4	H4	51.4	296.5
C2	C3	C4	H5	171.3	56.4
C2	C3	C5	H6	67.2	303.6
C2	C3	C5	H7	187.2	63.5
C2	C3	C5	H8	307.2	183.6
C6	N2	C1	N3	359.6	0.2
C1	N2	C6	C2	180.6	180.1
C6	N2	C2	C3	180.2	180.0
C7	C6	N2	H9	240.0	240.0
C7	C6	N2	H10	120.0	120.0
N2	C6	C7	C8	285.8	90.0
N2	C6	C7	C12	105.4	269.7
H9	C6	N2	H10	240.0	240.0
C4	C3	N1	H1	293.1	298.8
N1	C3	C4	C2	248.7	245.0
N1	C3	C4	C5	128.7	122.5
C2	C3	C4	C5	240.0	237.5
C4	C3	C5	H6	308.4	181.1
C4	C3	C5	H7	68.5	301.0
C4	C3	C5	H8	188.5	61.1
H3	C4	C3	H4	240.0	239.9
H3	C4	C3	H5	120.0	120.0
H4	C4	C3	H5	240.0	240.0
C5	C3	N1	H1	63.8	61.3
N1	C3	C5	C2	112.8	115.0
N1	C3	C5	C4	231.5	237.5
C2	C3	C5	C4	118.8	122.5
C5	C3	C4	H3	51.4	298.9
C5	C3	C4	H4	171.4	59.0
C5	C3	C4	H5	291.4	179.0
H6	C5	C3	H7	240.0	240.1
H6	C5	C3	H8	120.0	120.0
H7	C5	C3	H8	240.0	239.9
H3	C4	C3	C5	51.4	298.9
C3	C4	H3	H4	120.0	120.0
C3	C4	H3	H5	240.0	240.0
H4	C4	H3	H5	120.0	120.0
H4	C4	C3	C5	171.4	59.0
C3	C4	H4	H3	239.9	239.9
C3	C4	H4	H5	120.0	120.0
H3	C4	H4	H5	240.0	240.0
H5	C4	C3	C5	291.4	179.0
C3	C4	H5	H3	120.0	120.0
C3	C4	H5	H4	240.0	240.0
H3	C4	H5	H4	120.0	120.0
C3	C5	H6	H7	120.0	120.0
C3	C5	H6	H8	240.0	239.9
H7	C5	H6	H8	120.0	120.0
C3	C5	H7	H6	240.0	240.1
C3	C5	H7	H8	120.0	120.1
H6	C5	H7	H8	240.0	240.0
C3	C5	H8	H6	120.0	120.0
C3	C5	H8	H7	240.0	239.9
H6	C5	H8	H7	120.0	119.9
N2	C6	C7	H9	120.0	120.0
N2	C6	C7	H10	240.0	240.0
H9	C6	C7	H10	120.0	120.0
C8	C7	C6	C12	180.3	180.3
C6	C7	C8	C9	179.8	180.0
C6	C7	C8	H11	359.8	360.0
C6	C7	C12	C11	180.2	179.8
C6	C7	C12	H14	0.2	0.1
N2	C6	H9	C7	239.5	240.0
N2	C6	H9	H10	119.8	120.0
C7	C6	H9	H10	240.2	240.0
H9	C6	C7	C8	165.8	330.0
H9	C6	C7	C12	345.4	149.7
N2	C6	H10	C7	120.5	120.0
N2	C6	H10	H9	240.2	240.0
C7	C6	H10	H9	119.8	120.0
H10	C6	C7	C8	45.8	210.0
H10	C6	C7	C12	225.4	29.7
C8	C7	C6	H9	165.8	330.0
C8	C7	C6	H10	45.8	210.0
C6	C7	C8	C12	179.7	179.7
C8	C7	C12	C11	359.9	359.5
C8	C7	C12	H14	179.9	179.8
C9	C8	C7	H11	180.0	180.0
C7	C8	C9	C10	359.9	-0.0
C7	C8	C9	H12	179.8	180.0
C12	C7	C6	H9	345.4	149.7
C12	C7	C6	H10	225.4	29.7
C6	C7	C12	C8	180.3	180.3
C12	C7	C8	C9	0.2	0.3
C12	C7	C8	H11	180.1	180.3
C10	C11	C12	C7	0.1	0.5
C7	C12	C11	CL1	180.1	180.3
C11	C12	C7	H14	180.0	179.7
C9	C8	C7	C12	0.2	0.3
C7	C8	C9	H11	180.0	180.0
C10	C9	C8	H12	180.0	180.0
C8	C9	C10	C11	0.1	360.0
C8	C9	C10	H13	180.1	179.9
H11	C8	C7	C12	180.1	180.3
C7	C8	H11	C9	180.0	180.0
H11	C8	C9	C10	179.9	180.0
H11	C8	C9	H12	359.9	0.0
C10	C9	C8	H11	179.9	180.0
C8	C9	C10	H12	180.0	180.0
C11	C10	C9	H13	180.0	180.1
C9	C10	C11	C12	359.9	359.8
C9	C10	C11	CL1	180.0	179.9
H12	C9	C8	H11	359.9	0.0
C8	C9	H12	C10	180.0	180.0
H12	C9	C10	C11	180.1	180.0
H12	C9	C10	H13	0.1	359.9
C7	C12	C11	C10	0.1	0.5
C11	C10	C9	H12	180.1	180.0
C9	C10	C11	H13	180.0	179.9
C12	C11	C10	CL1	180.0	179.8
C10	C11	C12	H14	180.1	180.2
H13	C10	C9	H12	0.1	359.9
C9	C10	H13	C11	180.0	180.1
H13	C10	C11	C12	179.9	179.8
H13	C10	C11	CL1	360.0	0.0
C7	C12	C11	H14	180.0	180.3
C12	C11	C10	H13	179.9	179.8
C10	C11	C12	CL1	180.0	180.2
CL1	C11	C10	H13	360.0	0.0
C10	C11	CL1	C12	180.0	179.8
CL1	C11	C12	H14	0.1	0.0
C7	C12	H14	C11	180.0	179.7
H14	C12	C11	CL1	0.1	0.0