PDB Chemical Component BDG

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for BDG

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C5	O5	1.443	1.425
C5	C4	1.520	1.530
C5	C6	1.526	1.531
C5	H5	1.099	1.090
O5	C1	1.446	1.425
C1	O1	1.449	1.428
C1	C2	1.534	1.531
C1	H1	1.092	1.090
O1	HO1	0.950	0.967
C2	N2	1.451	1.469
C2	C3	1.525	1.532
C2	H2	1.097	1.091
N2	HN21	0.981	1.009
N2	HN22	0.981	1.009
C3	O3	1.419	1.429
C3	C4	1.521	1.531
C3	H3	1.086	1.090
O3	HO3	0.969	0.966
C4	O4	1.420	1.429
C4	H4	1.089	1.090
O4	HO4	0.963	0.967
C6	N6	1.451	1.468
C6	H61	1.112	1.090
C6	H62	1.094	1.089
N6	HN61	0.980	1.009
N6	HN62	0.981	1.009

Bond Angles for BDG

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O5	C5	C4	110.1	109.8
O5	C5	C6	110.0	109.5
O5	C5	H5	106.7	109.4
C5	O5	C1	113.3	107.6
C4	C5	C6	107.7	109.4
C4	C5	H5	110.1	109.4
C5	C4	C3	109.6	109.0
C5	C4	O4	110.0	109.5
C5	C4	H4	107.6	109.6
C6	C5	H5	112.3	109.3
C5	C6	N6	110.7	109.5
C5	C6	H61	105.0	109.4
C5	C6	H62	107.6	109.5
O5	C1	O1	112.0	109.4
O5	C1	C2	110.6	109.8
O5	C1	H1	106.8	109.4
O1	C1	C2	111.1	109.4
O1	C1	H1	107.5	109.5
C1	O1	HO1	112.1	106.8
C2	C1	H1	108.5	109.4
C1	C2	N2	110.0	109.5
C1	C2	C3	111.8	109.0
C1	C2	H2	108.3	109.5
N2	C2	C3	109.2	109.7
N2	C2	H2	110.3	109.5
C2	N2	HN21	120.0	106.7
C2	N2	HN22	117.7	106.7
C3	C2	H2	107.4	109.5
C2	C3	O3	109.7	109.6
C2	C3	C4	113.2	108.7
C2	C3	H3	106.2	109.6
HN21	N2	HN22	107.3	106.7
O3	C3	C4	109.4	109.8
O3	C3	H3	111.9	109.5
C3	O3	HO3	111.4	106.8
C4	C3	H3	106.4	109.7
C3	C4	O4	110.3	109.6
C3	C4	H4	110.4	109.5
O4	C4	H4	108.8	109.5
C4	O4	HO4	110.0	106.8
N6	C6	H61	114.0	109.5
N6	C6	H62	113.2	109.5
C6	N6	HN61	120.2	106.7
C6	N6	HN62	120.1	106.7
H61	C6	H62	105.7	109.4
HN61	N6	HN62	107.5	106.8

Torsion Angles for BDG

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C4	C5	O5	C6	241.5	239.9
C4	C5	O5	H5	119.4	120.1
O5	C5	C4	C3	303.1	298.7
O5	C5	C4	O4	181.5	178.8
O5	C5	C4	H4	63.1	58.6
C6	C5	O5	H5	237.9	240.2
O5	C5	C6	N6	32.1	59.8
O5	C5	C6	H61	268.6	299.8
O5	C5	C6	H62	156.3	179.9
C5	O5	C1	O1	65.7	52.4
C5	O5	C1	C2	301.1	292.4
C5	O5	C1	H1	183.1	172.4
O5	C5	C4	C6	119.9	120.1
O5	C5	C4	H5	242.6	239.9
C4	C5	O5	C1	63.2	67.6
C6	C5	C4	H5	122.7	119.8
C4	C5	C6	N6	152.1	180.1
C4	C5	C6	H61	28.6	60.1
C4	C5	C6	H62	276.3	300.2
C2	C3	C4	C5	50.5	53.8
O3	C3	C4	C5	173.1	173.7
C5	C4	C3	H3	294.2	294.0
C3	C4	C5	O4	121.5	119.9
C3	C4	C5	H4	239.9	240.1
O4	C4	C5	H4	118.4	120.2
C5	C4	O4	HO4	176.8	179.6
O5	C5	C6	C4	240.0	239.7
O5	C5	C6	H5	118.7	119.9
C6	C5	O5	C1	181.7	187.7
C4	C5	C6	H5	238.7	240.2
C6	C5	C4	C3	183.1	178.6
C6	C5	C4	O4	61.6	58.6
C6	C5	C4	H4	303.2	298.5
N6	C6	C5	H61	123.5	120.0
N6	C6	C5	H62	235.8	239.9
C5	C6	N6	HN61	293.0	180.0
C5	C6	N6	HN62	155.3	293.9
H61	C6	C5	H62	112.3	119.9
O5	C5	H5	C4	119.5	120.3
O5	C5	H5	C6	239.4	240.1
H5	C5	O5	C1	303.8	307.6
C4	C5	H5	C6	119.9	119.8
H5	C5	C4	C3	60.5	58.8
H5	C5	C4	O4	298.9	298.8
H5	C5	C4	H4	180.5	178.7
H5	C5	C6	N6	273.4	299.9
H5	C5	C6	H61	149.9	180.0
H5	C5	C6	H62	37.6	60.1
C1	O5	C5	C4	63.2	67.6
C1	O5	C5	C6	181.7	187.7
C1	O5	C5	H5	303.8	307.6
O1	C1	O5	C2	124.6	120.0
O1	C1	O5	H1	242.6	240.1
O5	C1	O1	HO1	180.0	60.1
C2	C1	O5	H1	118.0	120.0
O5	C1	C2	N2	171.0	181.2
O5	C1	C2	C3	49.6	61.2
O5	C1	C2	H2	291.6	301.4
O5	C1	O1	C2	235.7	239.7
O5	C1	O1	H1	117.0	119.9
C2	C1	O1	H1	241.4	240.2
O1	C1	C2	N2	45.9	61.2
O1	C1	C2	C3	284.5	301.2
O1	C1	C2	H2	166.5	181.4
O5	C1	C2	O1	125.1	120.1
O5	C1	C2	H1	243.1	239.9
O1	C1	C2	H1	118.0	119.9
C2	C1	O1	HO1	304.4	180.4
N2	C2	C1	C3	121.4	120.0
N2	C2	C1	H2	239.5	239.8
C1	C2	N2	HN21	325.9	60.0
C1	C2	N2	HN22	192.1	173.8
C3	C2	C1	H2	118.0	119.8
C1	C2	C3	O3	190.2	186.3
C1	C2	C3	C4	312.7	306.3
C1	C2	C3	H3	69.1	66.1
O5	C1	H1	O1	239.6	240.1
O5	C1	H1	C2	119.3	120.3
O1	C1	H1	C2	239.7	240.2
H1	C1	O1	HO1	63.0	300.2
H1	C1	C2	N2	287.9	301.3
H1	C1	C2	C3	166.5	181.3
H1	C1	C2	H2	48.5	61.5
HO1	O1	C1	C2	304.4	180.4
HO1	O1	C1	H1	63.0	300.2
N2	C2	C1	H1	287.9	301.3
C1	C2	N2	C3	237.0	240.4
C1	C2	N2	H2	119.3	120.2
C3	C2	N2	H2	242.3	239.8
N2	C2	C3	O3	68.4	66.4
N2	C2	C3	C4	190.8	186.3
N2	C2	C3	H3	307.2	306.1
HN21	N2	C2	HN22	133.8	246.2
C5	C4	C3	C2	50.5	53.8
C3	C2	C1	H1	166.5	181.3
C1	C2	C3	N2	121.9	119.9
C1	C2	C3	H2	241.4	240.2
N2	C2	C3	H2	119.6	120.2
C3	C2	N2	HN21	88.9	179.6
C3	C2	N2	HN22	315.0	293.4
O3	C3	C2	C4	237.5	240.0
O3	C3	C2	H3	121.1	120.2
C2	C3	O3	HO3	64.7	300.1
C4	C3	C2	H3	243.6	240.2
C2	C3	C4	O4	171.8	173.7
C2	C3	C4	H4	292.1	293.8
H2	C2	C1	H1	48.5	61.5
C1	C2	H2	N2	239.7	239.8
C1	C2	H2	C3	120.8	119.5
N2	C2	H2	C3	241.1	239.7
H2	C2	N2	HN21	206.6	299.8
H2	C2	N2	HN22	72.8	53.6
H2	C2	C3	O3	308.8	306.1
H2	C2	C3	C4	71.3	66.1
H2	C2	C3	H3	187.7	185.9
HN21	N2	C2	C3	88.9	179.6
HN21	N2	C2	H2	206.6	299.8
C2	N2	HN21	HN22	222.0	113.8
HN22	N2	C2	C3	315.0	293.4
HN22	N2	C2	H2	72.8	53.6
C2	N2	HN22	HN21	139.1	246.2
C5	C4	C3	O3	173.1	173.7
O3	C3	C2	H2	308.8	306.1
C2	C3	O3	C4	124.7	119.3
C2	C3	O3	H3	242.4	239.8
C4	C3	O3	H3	117.7	120.5
O3	C3	C4	O4	294.5	293.5
O3	C3	C4	H4	54.8	53.7
C3	C4	C5	C6	183.1	178.6
C3	C4	C5	H5	60.5	58.8
C5	C4	C3	O4	238.7	240.1
C5	C4	C3	H4	118.4	119.9
C4	C3	C2	H2	71.3	66.1
C2	C3	C4	O3	237.4	240.1
C2	C3	C4	H3	116.3	119.7
O3	C3	C4	H3	238.9	239.6
C4	C3	O3	HO3	300.0	180.8
O4	C4	C3	H4	239.7	239.8
C3	C4	O4	HO4	55.7	60.0
H3	C3	C2	H2	187.7	185.9
C2	C3	H3	O3	119.7	120.3
C2	C3	H3	C4	239.1	240.8
O3	C3	H3	C4	119.4	120.5
H3	C3	O3	HO3	182.3	60.4
H3	C3	C4	O4	55.6	53.9
H3	C3	C4	H4	175.9	174.1
HO3	O3	C3	C4	300.0	180.8
HO3	O3	C3	H3	182.3	60.4
O4	C4	C5	C6	61.6	58.6
O4	C4	C5	H5	298.9	298.8
C5	C4	O4	C3	121.1	119.6
C5	C4	O4	H4	242.3	239.8
O4	C4	C3	H3	55.6	53.9
C3	C4	O4	H4	121.2	120.2
H4	C4	C5	C6	303.2	298.5
H4	C4	C5	H5	180.5	178.7
C5	C4	H4	C3	240.4	240.4
C5	C4	H4	O4	119.2	120.2
H4	C4	C3	H3	175.9	174.1
C3	C4	H4	O4	238.8	239.8
H4	C4	O4	HO4	294.5	299.8
HO4	O4	C4	H4	294.5	299.8
N6	C6	C5	H5	273.4	299.9
C5	C6	N6	H61	241.9	240.1
C5	C6	N6	H62	120.9	120.1
H61	C6	N6	H62	239.0	240.0
HN61	N6	C6	HN62	137.7	246.1
H61	C6	C5	H5	149.9	180.0
C5	C6	H61	N6	121.4	120.0
C5	C6	H61	H62	246.4	240.0
N6	C6	H61	H62	125.1	120.1
H61	C6	N6	HN61	51.1	299.9
H61	C6	N6	HN62	273.4	53.8
H62	C6	C5	H5	37.6	60.1
C5	C6	H62	N6	237.3	239.9
C5	C6	H62	H61	111.7	119.9
N6	C6	H62	H61	234.4	240.0
H62	C6	N6	HN61	172.1	59.9
H62	C6	N6	HN62	34.4	173.8
HN61	N6	C6	H61	51.1	299.9
HN61	N6	C6	H62	172.1	59.9
C6	N6	HN61	HN62	217.7	113.8
HN62	N6	C6	H61	273.4	53.8
HN62	N6	C6	H62	34.4	173.8
C6	N6	HN62	HN61	142.4	246.2