PDB Chemical Component BDF

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for BDF

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.521	1.530
C1	O1	1.422	1.429
C1	H11	1.114	1.090
C1	H12	1.116	1.090
C2	C3	1.556	1.529
C2	O2	1.430	1.429
C2	O6	1.435	1.426
C3	C4	1.533	1.533
C3	O3	1.439	1.429
C3	H3	1.115	1.090
C4	C5	1.527	1.532
C4	O4	1.431	1.429
C4	H4	1.115	1.090
C5	C6	1.519	1.530
C5	O5	1.442	1.428
C5	H5	1.115	1.091
C6	O6	1.453	1.425
C6	H61	1.115	1.090
C6	H62	1.115	1.090
O1	HO1	0.950	0.967
O2	HO2	0.950	0.966
O3	HO3	0.950	0.967
O4	HO4	0.950	0.966
O5	HO5	0.949	0.967

Bond Angles for BDF

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O1	112.7	109.5
C2	C1	H11	111.0	109.5
C2	C1	H12	111.0	109.5
C1	C2	C3	111.5	109.4
C1	C2	O2	111.2	109.4
C1	C2	O6	105.5	109.4
O1	C1	H11	111.0	109.5
O1	C1	H12	111.0	109.5
C1	O1	HO1	112.7	106.8
H11	C1	H12	99.3	109.5
C3	C2	O2	110.2	109.4
C3	C2	O6	108.7	109.8
C2	C3	C4	109.7	109.0
C2	C3	O3	110.4	109.6
C2	C3	H3	108.4	109.7
O2	C2	O6	109.6	109.4
C2	O2	HO2	111.3	106.8
C2	O6	C6	114.1	107.7
C4	C3	O3	108.4	109.5
C4	C3	H3	110.3	109.5
C3	C4	C5	112.7	108.6
C3	C4	O4	110.3	109.8
C3	C4	H4	106.8	109.7
O3	C3	H3	109.7	109.6
C3	O3	HO3	110.4	106.9
C5	C4	O4	109.6	109.6
C5	C4	H4	107.5	109.6
C4	C5	C6	108.8	109.0
C4	C5	O5	110.8	109.7
C4	C5	H5	108.9	109.5
O4	C4	H4	110.0	109.6
C4	O4	HO4	110.3	106.9
C6	C5	O5	109.1	109.5
C6	C5	H5	110.7	109.5
C5	C6	O6	109.9	109.8
C5	C6	H61	112.0	109.4
C5	C6	H62	112.0	109.4
O5	C5	H5	108.7	109.5
C5	O5	HO5	110.8	106.8
O6	C6	H61	112.0	109.3
O6	C6	H62	112.0	109.5
H61	C6	H62	98.4	109.4

Torsion Angles for BDF

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1	C2	H11	234.7	120.0
O1	C1	C2	H12	125.3	240.0
C2	C1	O1	HO1	180.0	180.0
H11	C1	C2	H12	250.5	120.0
C3	C2	C1	O2	236.6	240.1
C3	C2	C1	O6	117.8	120.3
C1	C2	C3	C4	190.2	178.6
C1	C2	C3	O3	70.8	58.8
C1	C2	C3	H3	310.7	298.5
O2	C2	C1	O6	241.3	240.2
C1	C2	O2	HO2	180.1	60.0
C1	C2	O6	C6	181.0	187.7
C2	C1	O1	H11	125.3	240.0
C2	C1	O1	H12	234.8	120.0
O1	C1	C2	C3	58.1	180.2
O1	C1	C2	O2	181.5	300.0
O1	C1	C2	O6	300.2	59.8
H11	C1	O1	H12	109.5	240.0
C2	C1	H11	O1	233.8	120.0
C2	C1	H11	H12	116.9	240.0
H11	C1	C2	C3	183.4	60.1
H11	C1	C2	O2	306.8	180.0
H11	C1	C2	O6	65.5	299.8
O1	C1	H11	H12	243.1	120.0
H11	C1	O1	HO1	54.8	300.0
C2	C1	H12	O1	126.2	240.0
C2	C1	H12	H11	243.1	120.0
H12	C1	C2	C3	292.8	300.2
H12	C1	C2	O2	56.3	60.0
H12	C1	C2	O6	175.0	179.8
O1	C1	H12	H11	116.9	240.0
H12	C1	O1	HO1	305.3	60.0
C3	C2	C1	O1	58.1	180.2
C3	C2	C1	H11	183.4	60.1
C3	C2	C1	H12	292.8	300.2
C1	C2	C3	O2	124.0	119.8
C1	C2	C3	O6	244.1	239.9
O2	C2	C3	O6	120.1	120.1
C3	C2	O2	HO2	304.3	179.8
C3	C2	O6	C6	61.3	67.6
C4	C3	C2	O3	119.4	119.8
C4	C3	C2	H3	239.5	240.1
C2	C3	C4	C5	52.6	53.8
C2	C3	C4	O4	175.4	173.6
C2	C3	C4	H4	294.8	294.1
O3	C3	C2	H3	120.1	120.3
C2	C3	O3	HO3	180.0	179.5
O2	C2	C1	O1	181.5	300.0
O2	C2	C1	H11	306.8	180.0
O2	C2	C1	H12	56.3	60.0
C1	C2	O2	C3	235.8	240.1
C1	C2	O2	O6	116.2	119.8
C3	C2	O2	O6	240.4	239.7
O2	C2	C3	C4	66.1	58.7
O2	C2	C3	O3	306.8	298.9
O2	C2	C3	H3	186.7	178.6
O2	C2	O6	C6	300.8	307.5
O6	C2	C1	O1	300.2	59.8
O6	C2	C1	H11	65.5	299.8
O6	C2	C1	H12	175.0	179.8
C1	C2	O6	C3	119.7	120.1
C1	C2	O6	O2	240.2	240.2
C3	C2	O6	O2	120.5	120.1
O6	C2	C3	C4	306.0	298.7
O6	C2	C3	O3	186.7	178.9
O6	C2	C3	H3	66.6	58.6
O6	C2	O2	HO2	63.8	300.1
C5	C6	O6	C2	296.5	292.5
C2	O6	C6	H61	171.2	52.6
C2	O6	C6	H62	61.7	172.3
C4	C3	C2	O2	66.1	58.7
C4	C3	C2	O6	306.0	298.7
C2	C3	C4	O3	239.4	240.1
C2	C3	C4	H3	119.4	120.0
O3	C3	C4	H3	239.9	239.9
C4	C3	O3	HO3	59.8	60.0
C5	C4	C3	O4	237.1	240.2
C5	C4	C3	H4	117.7	119.7
C3	C4	C5	C6	306.5	306.2
C3	C4	C5	O5	66.3	66.2
C3	C4	C5	H5	185.8	186.4
O4	C4	C3	H4	240.6	239.5
C3	C4	O4	HO4	179.9	180.8
O3	C3	C2	O2	306.8	298.9
O3	C3	C2	O6	186.7	178.9
C2	C3	O3	C4	120.2	119.5
C2	C3	O3	H3	240.7	239.6
C4	C3	O3	H3	120.5	120.1
O3	C3	C4	C5	173.1	173.7
O3	C3	C4	O4	296.0	293.5
O3	C3	C4	H4	55.4	54.0
H3	C3	C2	O2	186.7	178.6
H3	C3	C2	O6	66.6	58.6
C2	C3	H3	C4	239.8	240.4
C2	C3	H3	O3	120.5	120.3
C4	C3	H3	O3	240.7	239.9
H3	C3	C4	C5	293.2	293.8
H3	C3	C4	O4	56.1	53.6
H3	C3	C4	H4	175.5	174.1
H3	C3	O3	HO3	299.3	299.9
C5	C4	C3	O3	173.1	173.7
C5	C4	C3	H3	293.2	293.8
C3	C4	C5	O4	123.2	119.9
C3	C4	C5	H4	242.7	240.2
O4	C4	C5	H4	119.5	120.3
C5	C4	O4	HO4	304.5	300.0
C6	C5	C4	O5	240.1	240.1
C6	C5	C4	H5	120.7	119.8
C4	C5	C6	O6	56.4	61.2
C4	C5	C6	H61	181.6	301.2
C4	C5	C6	H62	291.1	181.4
O5	C5	C4	H5	240.5	239.8
C4	C5	O5	HO5	180.0	180.4
O4	C4	C3	O3	296.0	293.5
O4	C4	C3	H3	56.1	53.6
C3	C4	O4	C5	235.4	240.8
C3	C4	O4	H4	117.4	120.5
C5	C4	O4	H4	242.1	239.7
O4	C4	C5	C6	183.3	186.3
O4	C4	C5	O5	303.1	306.2
O4	C4	C5	H5	62.6	66.5
H4	C4	C3	O3	55.4	54.0
H4	C4	C3	H3	175.5	174.1
C3	C4	H4	C5	121.1	119.1
C3	C4	H4	O4	240.4	239.4
C5	C4	H4	O4	119.3	120.3
H4	C4	C5	C6	63.8	66.0
H4	C4	C5	O5	183.7	185.9
H4	C4	C5	H5	303.1	306.2
H4	C4	O4	HO4	62.5	60.3
C2	O6	C6	C5	296.5	292.5
C6	C5	C4	O4	183.3	186.3
C6	C5	C4	H4	63.8	66.0
C4	C5	C6	O5	120.9	120.0
C4	C5	C6	H5	240.4	240.2
O5	C5	C6	H5	119.5	120.1
C6	C5	O5	HO5	299.7	300.0
O6	C6	C5	H61	234.7	120.0
O6	C6	C5	H62	125.2	239.8
H61	C6	C5	H62	250.5	119.8
O5	C5	C4	O4	303.1	306.2
O5	C5	C4	H4	183.7	185.9
C4	C5	O5	C6	240.3	240.4
C4	C5	O5	H5	119.6	120.2
C6	C5	O5	H5	239.3	239.9
O5	C5	C6	O6	295.4	301.2
O5	C5	C6	H61	60.7	181.2
O5	C5	C6	H62	170.2	61.4
H5	C5	C4	O4	62.6	66.5
H5	C5	C4	H4	303.1	306.2
C4	C5	H5	C6	119.5	119.5
C4	C5	H5	O5	239.3	239.7
C6	C5	H5	O5	119.8	120.1
H5	C5	C6	O6	175.9	181.1
H5	C5	C6	H61	301.2	61.0
H5	C5	C6	H62	50.7	301.2
H5	C5	O5	HO5	60.4	60.1
O6	C6	C5	O5	295.4	301.2
O6	C6	C5	H5	175.9	181.1
C5	C6	O6	H61	125.3	239.9
C5	C6	O6	H62	234.8	120.2
H61	C6	O6	H62	109.5	240.2
H61	C6	C5	O5	60.7	181.2
H61	C6	C5	H5	301.2	61.0
C5	C6	H61	O6	235.9	120.3
C5	C6	H61	H62	117.9	240.1
O6	C6	H61	H62	242.0	119.8
H62	C6	C5	O5	170.2	61.4
H62	C6	C5	H5	50.7	301.2
C5	C6	H62	O6	124.1	239.6
C5	C6	H62	H61	242.0	119.9
O6	C6	H62	H61	118.0	240.2
HO1	O1	C1	H11	54.8	300.0
HO1	O1	C1	H12	305.3	60.0
HO2	O2	C2	O6	63.8	300.1
HO3	O3	C3	H3	299.3	299.9
HO4	O4	C4	H4	62.5	60.3
HO5	O5	C5	H5	60.4	60.1