PDB Chemical Component BB8
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for BB8
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.491 |
1.470 |
| CA |
C |
1.527 |
1.507 |
| CA |
CB |
1.524 |
1.529 |
| C |
OXT |
1.316 |
1.342 |
| CB |
OB |
1.405 |
1.428 |
| CB |
CG |
1.569 |
1.507 |
| CG |
CD1 |
1.468 |
1.381 |
| CG |
CD2 |
1.441 |
1.383 |
| CD1 |
CE1 |
1.433 |
1.383 |
| CE1 |
CZ |
1.427 |
1.382 |
| CZ |
CE2 |
1.435 |
1.382 |
| CE2 |
CD2 |
1.445 |
1.382 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.010 |
| CA |
HA |
1.100 |
1.090 |
| C |
O |
1.718 |
1.208 |
| CB |
HB |
1.100 |
1.090 |
| OXT |
HXT |
0.950 |
0.967 |
| OB |
HC |
0.950 |
0.967 |
| CD1 |
HD1 |
1.080 |
1.080 |
| CD2 |
HD2 |
1.080 |
1.080 |
| CE1 |
HE1 |
1.080 |
1.080 |
| CZ |
HZ |
1.080 |
1.081 |
| CE2 |
HE2 |
1.080 |
1.080 |
Bond Angles for BB8
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N |
CA |
C |
105.6 |
109.4 |
| N |
CA |
CB |
108.0 |
109.5 |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.5 |
110.9 |
| N |
CA |
HA |
113.9 |
109.5 |
| C |
CA |
CB |
112.1 |
109.5 |
| CA |
C |
OXT |
118.3 |
120.0 |
| C |
CA |
HA |
109.8 |
109.4 |
| CA |
C |
O |
126.3 |
120.0 |
| CA |
CB |
OB |
117.5 |
109.5 |
| CA |
CB |
CG |
109.6 |
109.5 |
| CB |
CA |
HA |
107.5 |
109.5 |
| CA |
CB |
HB |
105.3 |
109.5 |
| O |
C |
OXT |
115.5 |
120.0 |
| C |
OXT |
HXT |
109.5 |
117.0 |
| OB |
CB |
CG |
114.0 |
109.5 |
| OB |
CB |
HB |
99.8 |
109.4 |
| CB |
OB |
HC |
109.5 |
114.0 |
| CB |
CG |
CD1 |
117.7 |
120.0 |
| CB |
CG |
CD2 |
123.6 |
120.0 |
| CG |
CB |
HB |
109.5 |
109.5 |
| CD1 |
CG |
CD2 |
118.6 |
120.0 |
| CG |
CD1 |
CE1 |
120.9 |
120.0 |
| CG |
CD1 |
HD1 |
119.6 |
120.0 |
| CG |
CD2 |
CE2 |
119.9 |
120.0 |
| CG |
CD2 |
HD2 |
120.1 |
120.0 |
| CD1 |
CE1 |
CZ |
119.5 |
119.9 |
| CE1 |
CD1 |
HD1 |
119.5 |
119.9 |
| CD1 |
CE1 |
HE1 |
120.3 |
120.0 |
| CE1 |
CZ |
CE2 |
120.6 |
120.0 |
| CZ |
CE1 |
HE1 |
120.3 |
120.0 |
| CE1 |
CZ |
HZ |
119.7 |
120.0 |
| CZ |
CE2 |
CD2 |
120.5 |
120.0 |
| CE2 |
CZ |
HZ |
119.7 |
120.0 |
| CZ |
CE2 |
HE2 |
119.8 |
120.0 |
| CE2 |
CD2 |
HD2 |
120.1 |
120.0 |
| CD2 |
CE2 |
HE2 |
119.8 |
120.0 |
| H |
N |
H2 |
109.4 |
111.0 |
Torsion Angles for BB8
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C |
CA |
N |
CB |
120.1 |
120.0 |
| N |
CA |
C |
OXT |
124.0 |
160.0 |
| C |
CA |
N |
HA |
239.4 |
240.1 |
| N |
CA |
C |
O |
304.0 |
339.9 |
| N |
CA |
CB |
OB |
156.4 |
180.0 |
| N |
CA |
CB |
CG |
288.7 |
300.0 |
| CB |
CA |
N |
HA |
119.3 |
120.1 |
| N |
CA |
CB |
HB |
46.5 |
60.0 |
| H |
N |
CA |
H2 |
240.0 |
236.1 |
| N |
CA |
C |
CB |
242.7 |
240.0 |
| C |
CA |
N |
H |
337.2 |
296.1 |
| C |
CA |
N |
H2 |
97.2 |
60.0 |
| N |
CA |
C |
HA |
123.2 |
119.9 |
| C |
CA |
CB |
OB |
40.5 |
60.0 |
| C |
CA |
CB |
CG |
172.8 |
180.0 |
| CB |
CA |
C |
HA |
240.5 |
240.0 |
| C |
CA |
CB |
HB |
290.6 |
300.0 |
| O |
C |
CA |
OXT |
180.0 |
180.0 |
| CA |
C |
OXT |
HXT |
180.0 |
180.0 |
| N |
CA |
CB |
C |
115.9 |
120.0 |
| CB |
CA |
N |
H |
217.1 |
176.1 |
| CB |
CA |
N |
H2 |
337.1 |
300.0 |
| N |
CA |
CB |
HA |
236.7 |
240.0 |
| CB |
CA |
C |
OXT |
241.3 |
280.0 |
| C |
CA |
CB |
HA |
120.8 |
120.0 |
| CB |
CA |
C |
O |
61.3 |
100.0 |
| OB |
CB |
CA |
CG |
227.7 |
240.0 |
| OB |
CB |
CA |
HB |
110.0 |
120.0 |
| CA |
CB |
OB |
HC |
26.1 |
60.0 |
| CA |
CB |
CG |
CD1 |
283.2 |
100.0 |
| CA |
CB |
CG |
CD2 |
102.8 |
279.7 |
| CG |
CB |
CA |
HB |
242.2 |
240.0 |
| OXT |
C |
CA |
CB |
241.3 |
280.0 |
| OXT |
C |
CA |
HA |
0.8 |
40.0 |
| CA |
C |
OXT |
O |
180.0 |
180.0 |
| CA |
CB |
OB |
CG |
130.2 |
120.0 |
| OB |
CB |
CA |
HA |
279.7 |
300.0 |
| CA |
CB |
OB |
HB |
246.9 |
240.0 |
| OB |
CB |
CG |
CD1 |
57.3 |
220.0 |
| OB |
CB |
CG |
CD2 |
236.8 |
39.7 |
| CG |
CB |
OB |
HB |
116.7 |
120.0 |
| CA |
CB |
CG |
OB |
226.0 |
240.0 |
| CG |
CB |
CA |
HA |
52.0 |
60.1 |
| CA |
CB |
CG |
HB |
115.1 |
120.0 |
| OB |
CB |
CG |
HB |
249.1 |
240.0 |
| CG |
CB |
OB |
HC |
255.9 |
299.9 |
| CD1 |
CG |
CB |
CD2 |
180.4 |
180.3 |
| CB |
CG |
CD1 |
CE1 |
179.5 |
180.0 |
| CB |
CG |
CD1 |
HD1 |
359.5 |
0.0 |
| CB |
CG |
CD2 |
CE2 |
180.8 |
179.8 |
| CB |
CG |
CD2 |
HD2 |
0.8 |
0.1 |
| CB |
CG |
CD1 |
CD2 |
179.6 |
179.7 |
| CD1 |
CG |
CB |
HB |
168.1 |
340.0 |
| CD1 |
CG |
CD2 |
CE2 |
0.4 |
359.5 |
| CD1 |
CG |
CD2 |
HD2 |
180.4 |
179.8 |
| CG |
CD1 |
CE1 |
CZ |
359.7 |
360.0 |
| CE1 |
CD1 |
CG |
HD1 |
180.0 |
180.0 |
| CG |
CD1 |
CE1 |
HE1 |
179.7 |
180.0 |
| CB |
CG |
CD2 |
CD1 |
180.4 |
180.3 |
| CD2 |
CG |
CB |
HB |
347.7 |
159.7 |
| CD2 |
CG |
CD1 |
CE1 |
359.9 |
0.3 |
| CD2 |
CG |
CD1 |
HD1 |
179.9 |
180.3 |
| CZ |
CE2 |
CD2 |
CG |
359.7 |
0.5 |
| CE2 |
CD2 |
CG |
HD2 |
180.0 |
179.7 |
| CG |
CD2 |
CE2 |
HE2 |
179.7 |
180.2 |
| CE1 |
CD1 |
CG |
CD2 |
359.9 |
0.3 |
| CG |
CD1 |
CE1 |
HD1 |
180.0 |
180.0 |
| CD1 |
CE1 |
CZ |
CE2 |
0.4 |
0.0 |
| CZ |
CE1 |
CD1 |
HE1 |
180.0 |
180.0 |
| CD1 |
CE1 |
CZ |
HZ |
180.4 |
180.0 |
| CZ |
CE1 |
CD1 |
HD1 |
179.7 |
179.9 |
| CD1 |
CE1 |
CZ |
HE1 |
180.0 |
180.0 |
| CE1 |
CZ |
CE2 |
CD2 |
359.9 |
359.8 |
| CE2 |
CZ |
CE1 |
HZ |
180.0 |
180.0 |
| CE1 |
CZ |
CE2 |
HE2 |
179.9 |
180.0 |
| CG |
CD2 |
CE2 |
CZ |
359.7 |
0.5 |
| CE2 |
CZ |
CE1 |
HE1 |
180.5 |
180.0 |
| CE1 |
CZ |
CE2 |
HZ |
180.0 |
180.0 |
| CZ |
CE2 |
CD2 |
HD2 |
179.7 |
180.2 |
| CD2 |
CE2 |
CZ |
HE2 |
180.0 |
179.7 |
| CG |
CD2 |
CE2 |
HD2 |
180.0 |
180.3 |
| CD2 |
CE2 |
CZ |
HZ |
179.9 |
179.8 |
| CZ |
CE2 |
CD2 |
HE2 |
180.0 |
180.3 |
| H |
N |
CA |
C |
337.2 |
296.1 |
| H |
N |
CA |
CB |
217.1 |
176.1 |
| CA |
N |
H |
H2 |
120.0 |
123.9 |
| H |
N |
CA |
HA |
97.8 |
56.0 |
| H2 |
N |
CA |
C |
97.2 |
60.0 |
| H2 |
N |
CA |
CB |
337.1 |
300.0 |
| CA |
N |
H2 |
H |
240.0 |
236.1 |
| H2 |
N |
CA |
HA |
217.8 |
179.9 |
| N |
CA |
HA |
C |
241.8 |
240.1 |
| N |
CA |
HA |
CB |
119.6 |
120.1 |
| HA |
CA |
N |
H |
97.8 |
56.0 |
| HA |
CA |
N |
H2 |
217.8 |
179.9 |
| C |
CA |
HA |
CB |
237.7 |
240.0 |
| HA |
CA |
C |
OXT |
0.8 |
40.0 |
| HA |
CA |
C |
O |
180.8 |
220.0 |
| HA |
CA |
CB |
OB |
279.7 |
300.0 |
| HA |
CA |
CB |
CG |
52.0 |
60.1 |
| HA |
CA |
CB |
HB |
169.7 |
180.0 |
| O |
C |
CA |
CB |
61.3 |
100.0 |
| CA |
C |
O |
OXT |
180.0 |
180.0 |
| O |
C |
CA |
HA |
180.8 |
220.0 |
| O |
C |
OXT |
HXT |
360.0 |
0.0 |
| CA |
CB |
HB |
OB |
122.2 |
120.0 |
| CA |
CB |
HB |
CG |
242.2 |
240.0 |
| HB |
CB |
CA |
HA |
169.7 |
180.0 |
| OB |
CB |
HB |
CG |
120.0 |
120.0 |
| HB |
CB |
OB |
HC |
139.2 |
180.0 |
| HB |
CB |
CG |
CD1 |
168.1 |
340.0 |
| HB |
CB |
CG |
CD2 |
347.7 |
159.7 |
| HC |
OB |
CB |
CG |
255.9 |
299.9 |
| HC |
OB |
CB |
HB |
139.2 |
180.0 |
| HD1 |
CD1 |
CG |
CD2 |
179.9 |
180.3 |
| CG |
CD1 |
HD1 |
CE1 |
180.0 |
180.0 |
| HD1 |
CD1 |
CE1 |
CZ |
179.7 |
179.9 |
| HD1 |
CD1 |
CE1 |
HE1 |
359.7 |
360.0 |
| CG |
CD2 |
HD2 |
CE2 |
180.0 |
179.7 |
| HD2 |
CD2 |
CE2 |
HE2 |
359.7 |
359.9 |
| CD1 |
CE1 |
HE1 |
CZ |
180.0 |
180.0 |
| HE1 |
CE1 |
CD1 |
HD1 |
359.7 |
360.0 |
| HE1 |
CE1 |
CZ |
CE2 |
180.5 |
180.0 |
| HE1 |
CE1 |
CZ |
HZ |
0.4 |
359.9 |
| CE1 |
CZ |
HZ |
CE2 |
180.0 |
180.0 |
| HZ |
CZ |
CE1 |
HE1 |
0.4 |
359.9 |
| HZ |
CZ |
CE2 |
CD2 |
179.9 |
179.8 |
| HZ |
CZ |
CE2 |
HE2 |
359.9 |
0.0 |
| CZ |
CE2 |
HE2 |
CD2 |
180.0 |
179.7 |
| HE2 |
CE2 |
CZ |
HZ |
359.9 |
0.0 |
| HE2 |
CE2 |
CD2 |
HD2 |
359.7 |
359.9 |