PDB Chemical Component BAP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for BAP

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.384 1.381
C1 C1A 1.404 1.397
C1 H1 1.074 1.081
C2 C3 1.401 1.382
C2 H2 1.072 1.079
C3 C3A 1.414 1.397
C3 H3 1.081 1.080
C3A C4 1.403 1.416
C3A C3B 1.389 1.414
C4 C5 1.395 1.353
C4 H4 1.079 1.080
C5 C5A 1.415 1.416
C5 H5 1.075 1.081
C5A C6 1.425 1.403
C5A C5B 1.391 1.410
C6 C7 1.408 1.377
C6 C4' 1.520 1.507
C7 C8 1.397 1.390
C7 C1' 1.519 1.508
C8 C8A 1.402 1.392
C8 H8 1.081 1.080
C8A C9 1.403 1.416
C8A C5B 1.390 1.412
C9 C10 1.386 1.353
C9 H9 1.077 1.079
C10 C1A 1.396 1.416
C10 H10 1.067 1.080
C1A C3B 1.386 1.412
C3B C5B 1.397 1.405
C1' O1' 1.413 1.429
C1' C2' 1.530 1.526
C1' H1' 1.091 1.090
O1' HO1 0.960 0.966
C2' O2' 1.412 1.429
C2' C3' 1.525 1.533
C2' H2' 1.090 1.090
O2' HO2 0.960 0.967
C3' O3' 1.414 1.429
C3' C4' 1.533 1.526
C3' H3' 1.091 1.090
O3' HO3 0.959 0.967
C4' H4'1 1.087 1.089
C4' H4'2 1.114 1.090

Bond Angles for BAP

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 C1A 120.4 120.2
C2 C1 H1 117.4 119.9
C1 C2 C3 119.3 121.5
C1 C2 H2 115.7 119.2
C1A C1 H1 122.2 119.9
C1 C1A C10 119.0 121.9
C1 C1A C3B 120.9 118.8
C3 C2 H2 125.0 119.3
C2 C3 C3A 119.8 120.1
C2 C3 H3 119.6 119.9
C3A C3 H3 120.6 120.0
C3 C3A C4 120.2 121.8
C3 C3A C3B 120.5 118.8
C4 C3A C3B 119.3 119.4
C3A C4 C5 119.9 120.9
C3A C4 H4 120.7 119.6
C3A C3B C1A 119.0 120.6
C3A C3B C5B 120.9 119.6
C5 C4 H4 119.4 119.5
C4 C5 C5A 120.7 120.8
C4 C5 H5 116.5 119.5
C5A C5 H5 122.7 119.6
C5 C5A C6 121.4 121.3
C5 C5A C5B 118.5 119.4
C6 C5A C5B 119.9 119.4
C5A C6 C7 119.9 119.9
C5A C6 C4' 120.8 117.5
C5A C5B C8A 119.6 120.4
C5A C5B C3B 120.6 119.9
C7 C6 C4' 119.2 122.6
C6 C7 C8 119.0 120.9
C6 C7 C1' 121.7 122.3
C6 C4' C3' 115.9 110.8
C6 C4' H4'1 107.2 109.2
C6 C4' H4'2 109.8 109.2
C8 C7 C1' 119.3 116.8
C7 C8 C8A 120.3 120.9
C7 C8 H8 120.7 119.6
C7 C1' O1' 109.7 109.3
C7 C1' C2' 114.4 110.8
C7 C1' H1' 107.9 109.3
C8A C8 H8 119.0 119.5
C8 C8A C9 118.9 122.1
C8 C8A C5B 120.9 118.6
C9 C8A C5B 120.2 119.4
C8A C9 C10 119.6 120.9
C8A C9 H9 121.7 119.6
C8A C5B C3B 119.8 119.7
C10 C9 H9 118.8 119.6
C9 C10 C1A 120.2 120.9
C9 C10 H10 119.9 119.6
C1A C10 H10 119.9 119.5
C10 C1A C3B 120.1 119.4
C1A C3B C5B 120.1 119.8
O1' C1' C2' 107.4 109.2
O1' C1' H1' 108.1 109.2
C1' O1' HO1 108.3 106.8
C2' C1' H1' 109.3 109.2
C1' C2' O2' 110.2 109.8
C1' C2' C3' 109.0 108.3
C1' C2' H2' 109.7 109.7
O2' C2' C3' 110.0 109.7
O2' C2' H2' 108.6 109.7
C2' O2' HO2 108.2 106.7
C3' C2' H2' 109.2 109.6
C2' C3' O3' 110.1 109.7
C2' C3' C4' 109.3 108.4
C2' C3' H3' 109.5 109.8
O3' C3' C4' 109.7 109.7
O3' C3' H3' 108.0 109.7
C3' O3' HO3 108.5 106.7
C4' C3' H3' 110.2 109.7
C3' C4' H4'1 105.8 109.3
C3' C4' H4'2 109.9 109.2
H4'1 C4' H4'2 7.5 109.1

Torsion Angles for BAP

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C1A C1 C2 H1 179.0 180.0
C2 C1 C1A C10 180.1 180.0
C2 C1 C1A C3B 0.1 360.0
C3 C2 C1 H2 179.9 180.0
C1 C2 C3 C3A 0.1 0.1
C1 C2 C3 H3 180.4 180.0
C2 C1 C1A H1 181.1 180.0
C1A C1 C2 C3 359.6 360.0
C1A C1 C2 H2 179.7 180.0
C3A C3B C1A C1 0.5 0.0
C9 C10 C1A C1 178.1 179.9
C1 C1A C10 H10 358.0 359.8
C10 C1A C1 C3B 180.0 180.1
C1 C1A C3B C5B 181.1 180.1
C2 C1 H1 C1A 179.0 180.0
H1 C1 C2 C3 180.6 180.0
H1 C1 C2 H2 0.8 0.0
H1 C1 C1A C10 359.1 0.0
H1 C1 C1A C3B 179.1 179.9
C3 C2 C1 C1A 359.6 360.0
C3 C2 C1 H1 180.6 180.0
C1 C2 C3 H2 180.1 180.0
C3A C3 C2 H3 179.7 180.1
C2 C3 C3A C4 180.1 180.0
C2 C3 C3A C3B 0.6 359.9
H2 C2 C1 C1A 179.7 180.0
H2 C2 C1 H1 0.8 0.0
C1 C2 H2 C3 179.9 180.0
H2 C2 C3 C3A 179.9 180.0
H2 C2 C3 H3 0.2 360.0
C3A C3 C2 H2 179.9 180.0
C2 C3 C3A H3 180.3 179.9
C4 C3A C3 C3B 179.6 180.0
C3 C3A C4 C5 180.2 180.1
C3 C3A C4 H4 359.8 0.0
C3 C3A C3B C1A 359.2 0.0
C3 C3A C3B C5B 178.6 179.9
H3 C3 C2 H2 0.2 360.0
C2 C3 H3 C3A 179.7 180.1
H3 C3 C3A C4 359.8 0.0
H3 C3 C3A C3B 180.3 180.0
C4 C3A C3 H3 359.8 0.0
C3 C3A C4 C3B 180.4 180.0
C4 C3A C3B C1A 179.6 180.0
C4 C3A C3B C5B 359.0 359.9
C5 C4 C3A H4 180.4 180.0
C3A C4 C5 C5A 1.9 359.9
C3A C4 C5 H5 181.0 179.9
C1 C1A C3B C3A 0.5 0.0
C3B C3A C3 H3 180.3 180.0
C3 C3A C3B C4 179.6 180.0
C3B C3A C4 C5 359.8 0.1
C3B C3A C4 H4 179.4 180.1
C5A C5B C3B C3A 0.5 0.1
C8A C5B C3B C3A 181.1 180.1
C10 C1A C3B C3A 180.5 180.0
C1A C3B C3A C5B 180.6 180.1
C5 C4 C3A C3B 359.8 0.1
C3A C4 C5 H4 179.6 180.0
C5A C5 C4 H5 181.0 180.0
C4 C5 C5A C6 174.3 179.8
C4 C5 C5A C5B 357.6 0.0
H4 C4 C3A C3B 179.4 180.1
C3A C4 H4 C5 180.4 180.0
H4 C4 C5 C5A 182.3 180.0
H4 C4 C5 H5 1.4 360.0
C5A C5 C4 H4 182.3 180.0
C4 C5 C5A H5 179.0 180.0
C6 C5A C5 C5B 176.6 179.8
C5 C5A C6 C7 183.3 179.9
C5 C5A C6 C4' 0.2 359.8
C5 C5A C5B C8A 180.6 180.0
C5 C5A C5B C3B 1.2 360.0
H5 C5 C4 H4 1.4 360.0
C4 C5 H5 C5A 181.0 180.0
H5 C5 C5A C6 355.3 359.8
H5 C5 C5A C5B 178.6 180.0
C6 C5A C5 H5 355.3 359.8
C5 C5A C6 C5B 183.4 180.2
C6 C5A C5B C8A 3.9 0.2
C6 C5A C5B C3B 184.5 180.2
C7 C6 C5A C4' 183.1 180.1
C5A C6 C7 C8 354.7 0.3
C5A C6 C7 C1' 173.5 180.7
C5A C6 C4' C3' 170.6 162.5
C5A C6 C4' H4'1 52.7 42.0
C5A C6 C4' H4'2 45.3 282.7
C3A C3B C5B C5A 0.5 0.1
C5B C5A C5 H5 178.6 180.0
C5 C5A C5B C6 176.7 179.8
C5B C5A C6 C7 359.9 359.7
C5B C5A C6 C4' 176.8 179.5
C8 C8A C5B C5A 357.7 360.0
C9 C8A C5B C5A 179.4 180.0
C8A C5B C5A C3B 179.4 180.0
C1A C3B C5B C5A 179.9 180.0
C7 C6 C5A C5B 359.9 359.7
C5A C6 C7 C4' 176.9 179.9
C7 C6 C4' C3' 347.5 342.3
C7 C6 C4' H4'1 229.6 221.9
C7 C6 C4' H4'2 222.2 102.6
C8 C7 C6 C1' 181.2 179.6
C6 C7 C8 C8A 6.9 359.9
C6 C7 C8 H8 183.5 179.9
C6 C7 C1' O1' 224.0 221.5
C6 C7 C1' C2' 344.8 341.8
C6 C7 C1' H1' 106.5 102.1
C4' C6 C5A C5B 176.8 179.5
C5A C6 C4' C7 183.1 180.1
C4' C6 C7 C8 177.8 180.5
C4' C6 C7 C1' 356.6 0.9
C2' C3' C4' C6 45.9 50.9
O3' C3' C4' C6 285.0 291.3
C6 C4' C3' H3' 166.2 170.8
C3' C4' C6 H4'1 117.9 120.4
C3' C4' C6 H4'2 125.3 239.7
H4'1 C4' C6 H4'2 7.4 119.3
C8 C7 C6 C4' 177.8 180.5
C6 C7 C8 C1' 178.8 180.4
C8 C7 C1' O1' 42.8 41.9
C8 C7 C1' C2' 163.5 162.2
C8 C7 C1' H1' 285.3 282.5
C8A C8 C7 H8 183.4 180.0
C7 C8 C8A C9 175.1 180.0
C7 C8 C8A C5B 356.8 360.0
C1' C7 C6 C4' 356.6 0.9
C6 C7 C1' C8 181.2 179.6
C1' C7 C8 C8A 188.1 179.5
C1' C7 C8 H8 4.7 359.5
O1' C1' C7 C2' 239.3 239.7
O1' C1' C7 H1' 117.5 119.4
C7 C1' O1' HO1 179.3 300.0
C2' C1' C7 H1' 238.2 239.7
C7 C1' C2' O2' 169.2 171.2
C7 C1' C2' C3' 48.4 51.4
C7 C1' C2' H2' 288.8 291.8
C5A C5B C8A C8 357.7 360.0
C8A C8 C7 C1' 188.1 179.5
C7 C8 C8A H8 176.7 180.0
C9 C8A C8 C5B 178.3 180.0
C8 C8A C9 C10 182.0 180.0
C8 C8A C9 H9 1.6 0.1
C8 C8A C5B C3B 177.1 180.0
H8 C8 C7 C1' 4.7 359.5
C7 C8 H8 C8A 183.4 180.0
H8 C8 C8A C9 358.5 0.0
H8 C8 C8A C5B 180.2 180.0
C5A C5B C8A C9 179.4 180.0
C9 C8A C8 H8 358.5 0.0
C8 C8A C9 C5B 181.7 180.0
C9 C8A C5B C3B 358.8 359.9
C10 C9 C8A H9 180.4 179.9
C8A C9 C10 C1A 1.3 360.0
C8A C9 C10 H10 181.3 180.0
C3A C3B C5B C8A 181.1 180.1
C5A C5B C8A C3B 180.6 180.0
C5B C8A C8 H8 180.2 180.0
C8 C8A C5B C9 178.3 180.0
C5B C8A C9 C10 0.3 0.1
C5B C8A C9 H9 179.9 180.1
C1A C3B C5B C8A 0.5 0.0
C1 C1A C10 C9 178.1 179.9
C10 C9 C8A C5B 0.3 0.1
C8A C9 C10 H9 179.6 180.1
C1A C10 C9 H10 180.0 179.9
C9 C10 C1A C3B 358.1 360.0
H9 C9 C8A C5B 179.9 180.1
C8A C9 H9 C10 180.4 179.9
H9 C9 C10 C1A 181.6 179.9
H9 C9 C10 H10 1.7 360.0
C10 C1A C1 H1 359.1 0.0
C1 C1A C10 C3B 180.0 179.9
C3A C3B C1A C10 180.5 180.0
C1A C10 C9 H9 181.6 179.9
C9 C10 C1A H10 180.0 180.1
C10 C1A C3B C5B 1.1 0.0
H10 C10 C9 H9 1.7 360.0
C9 C10 H10 C1A 180.0 179.9
H10 C10 C1A C3B 178.0 179.9
C3B C1A C1 H1 179.1 179.9
C1 C1A C3B C10 180.0 180.1
C3A C3B C1A C5B 179.4 179.9
C5A C5B C3B C1A 179.9 180.0
C8A C5B C3B C1A 0.5 0.0
C3B C1A C10 H10 178.0 179.9
C3A C3B C5B C1A 180.6 180.1
C5A C5B C3B C8A 179.4 180.0
C7 C1' O1' C2' 124.8 121.3
C7 C1' O1' H1' 242.6 240.6
C2' C1' O1' H1' 117.8 119.3
O1' C1' C2' O2' 291.2 291.6
O1' C1' C2' C3' 170.4 171.8
O1' C1' C2' H2' 50.8 52.2
C7 C1' C2' O1' 238.0 239.6
C7 C1' C2' H1' 121.0 120.3
O1' C1' C2' H1' 243.0 240.7
C2' C1' O1' HO1 54.4 178.8
O2' C2' C1' C3' 120.9 119.8
O2' C2' C1' H2' 240.4 239.4
C1' C2' O2' HO2 295.9 60.0
C3' C2' C1' H2' 119.6 119.6
C1' C2' C3' O3' 57.5 49.8
C1' C2' C3' C4' 296.9 290.2
C1' C2' C3' H3' 176.2 170.4
C7 C1' H1' O1' 118.5 119.4
C7 C1' H1' C2' 235.1 238.7
O1' C1' H1' C2' 116.6 119.3
H1' C1' O1' HO1 296.6 59.5
H1' C1' C2' O2' 48.2 50.9
H1' C1' C2' C3' 287.4 291.1
H1' C1' C2' H2' 167.8 171.5
HO1 O1' C1' C2' 54.4 178.8
HO1 O1' C1' H1' 296.6 59.5
O2' C2' C1' H1' 48.2 50.9
C1' C2' O2' C3' 239.7 241.1
C1' C2' O2' H2' 120.2 120.6
C3' C2' O2' H2' 240.5 239.5
O2' C2' C3' O3' 296.5 290.0
O2' C2' C3' C4' 175.9 170.4
O2' C2' C3' H3' 55.2 50.6
C6 C4' C3' C2' 45.9 50.9
C3' C2' C1' H1' 287.4 291.1
C1' C2' C3' O2' 121.0 119.8
C1' C2' C3' H2' 240.1 240.4
O2' C2' C3' H2' 119.1 120.6
C3' C2' O2' HO2 56.2 178.9
O3' C3' C2' C4' 120.6 119.7
O3' C3' C2' H3' 241.4 239.5
C2' C3' O3' HO3 178.8 180.5
C4' C3' C2' H3' 120.8 119.8
C2' C3' C4' H4'1 164.6 171.3
C2' C3' C4' H4'2 171.1 290.6
H2' C2' C1' H1' 167.8 171.5
C1' C2' H2' O2' 239.4 239.4
C1' C2' H2' C3' 119.4 118.8
O2' C2' H2' C3' 240.0 239.4
H2' C2' O2' HO2 175.7 299.4
H2' C2' C3' O3' 177.4 169.5
H2' C2' C3' C4' 56.8 49.8
H2' C2' C3' H3' 296.0 290.0
HO2 O2' C2' C3' 56.2 178.9
HO2 O2' C2' H2' 175.7 299.4
C6 C4' C3' O3' 285.0 291.3
O3' C3' C2' H2' 177.4 169.5
C2' C3' O3' C4' 239.6 241.1
C2' C3' O3' H3' 119.5 120.6
C4' C3' O3' H3' 239.9 239.4
O3' C3' C4' H4'1 43.7 51.6
O3' C3' C4' H4'2 50.2 171.0
C6 C4' C3' H4'1 241.3 239.6
C6 C4' C3' H4'2 234.8 120.3
C4' C3' C2' H2' 56.8 49.8
C2' C3' C4' O3' 120.9 119.7
C2' C3' C4' H3' 239.6 240.2
O3' C3' C4' H3' 118.8 120.5
C4' C3' O3' HO3 299.2 299.4
H4'1 C4' C3' H4'2 353.5 240.7
H3' C3' C2' H2' 296.0 290.0
C2' C3' H3' O3' 240.1 239.5
C2' C3' H3' C4' 120.3 119.0
O3' C3' H3' C4' 240.2 239.5
H3' C3' O3' HO3 59.3 59.9
H3' C3' C4' H4'1 284.9 291.1
H3' C3' C4' H4'2 291.4 50.5
HO3 O3' C3' C4' 299.2 299.4
HO3 O3' C3' H3' 59.3 59.9
C6 C4' H4'1 C3' 124.3 121.3
C6 C4' H4'1 H4'2 248.7 240.7
H4'1 C4' C3' H3' 284.9 291.1
C3' C4' H4'1 H4'2 124.4 119.4
C6 C4' H4'2 C3' 128.7 238.8
C6 C4' H4'2 H4'1 71.0 119.3
H4'2 C4' C3' H3' 291.4 50.5
C3' C4' H4'2 H4'1 302.4 240.6