PDB Chemical Component BAO
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for BAO
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.421 |
1.401 |
| C1 |
C6 |
1.426 |
1.390 |
| C1 |
C7 |
1.413 |
1.480 |
| C2 |
C3 |
1.415 |
1.362 |
| C2 |
H2 |
1.104 |
1.080 |
| C3 |
C4 |
1.391 |
1.403 |
| C3 |
H3 |
1.104 |
1.080 |
| C4 |
C5 |
1.358 |
1.410 |
| C4 |
N3 |
1.337 |
1.343 |
| C5 |
C6 |
1.397 |
1.387 |
| C5 |
N4 |
1.338 |
1.377 |
| C6 |
H6 |
1.102 |
1.080 |
| C7 |
N1 |
1.314 |
1.302 |
| C7 |
N2 |
1.345 |
1.379 |
| N1 |
HN1 |
1.021 |
0.970 |
| N2 |
HN21 |
1.020 |
0.970 |
| N2 |
HN22 |
1.020 |
0.970 |
| N3 |
C8 |
1.325 |
1.310 |
| N4 |
C8 |
1.341 |
1.370 |
| N4 |
HN4 |
1.019 |
0.970 |
| C8 |
C9 |
1.427 |
1.477 |
| C1' |
C2' |
1.421 |
1.401 |
| C1' |
C6' |
1.432 |
1.390 |
| C1' |
C7' |
1.421 |
1.480 |
| C2' |
C3' |
1.417 |
1.361 |
| C2' |
H2' |
1.104 |
1.080 |
| C3' |
C4' |
1.402 |
1.404 |
| C3' |
H3' |
1.103 |
1.080 |
| C4' |
C5' |
1.358 |
1.410 |
| C4' |
N3' |
1.341 |
1.343 |
| C5' |
C6' |
1.403 |
1.386 |
| C5' |
N4' |
1.339 |
1.377 |
| C6' |
H6' |
1.103 |
1.081 |
| C7' |
N1' |
1.343 |
1.302 |
| C7' |
N2' |
1.353 |
1.378 |
| N1' |
H1' |
1.020 |
0.971 |
| N2' |
H2'1 |
1.019 |
0.971 |
| N2' |
H2'2 |
1.020 |
0.970 |
| N3' |
C8' |
1.327 |
1.310 |
| N4' |
C8' |
1.330 |
1.369 |
| N4' |
HN4' |
1.019 |
0.970 |
| C8' |
C9 |
1.428 |
1.476 |
| C9 |
O9 |
1.244 |
1.216 |
Bond Angles for BAO
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C6 |
116.0 |
120.3 |
| C2 |
C1 |
C7 |
121.6 |
119.9 |
| C1 |
C2 |
C3 |
122.7 |
120.6 |
| C1 |
C2 |
H2 |
118.9 |
119.7 |
| C6 |
C1 |
C7 |
121.9 |
119.8 |
| C1 |
C6 |
C5 |
121.2 |
119.6 |
| C1 |
C6 |
H6 |
120.4 |
120.2 |
| C1 |
C7 |
N1 |
119.7 |
120.0 |
| C1 |
C7 |
N2 |
124.1 |
120.0 |
| C3 |
C2 |
H2 |
118.4 |
119.7 |
| C2 |
C3 |
C4 |
117.1 |
120.1 |
| C2 |
C3 |
H3 |
122.2 |
119.9 |
| C4 |
C3 |
H3 |
120.7 |
120.0 |
| C3 |
C4 |
C5 |
122.9 |
119.5 |
| C3 |
C4 |
N3 |
126.8 |
133.2 |
| C5 |
C4 |
N3 |
110.3 |
107.2 |
| C4 |
C5 |
C6 |
120.1 |
120.0 |
| C4 |
C5 |
N4 |
109.2 |
106.2 |
| C4 |
N3 |
C8 |
102.1 |
109.8 |
| C6 |
C5 |
N4 |
130.7 |
133.9 |
| C5 |
C6 |
H6 |
118.4 |
120.2 |
| C5 |
N4 |
C8 |
102.2 |
107.0 |
| C5 |
N4 |
HN4 |
128.8 |
126.5 |
| N1 |
C7 |
N2 |
116.1 |
120.0 |
| C7 |
N1 |
HN1 |
72.7 |
120.0 |
| C7 |
N2 |
HN21 |
124.2 |
120.0 |
| C7 |
N2 |
HN22 |
107.1 |
120.0 |
| HN21 |
N2 |
HN22 |
107.0 |
120.0 |
| N3 |
C8 |
N4 |
116.1 |
109.7 |
| N3 |
C8 |
C9 |
121.9 |
125.1 |
| C8 |
N4 |
HN4 |
129.0 |
126.5 |
| N4 |
C8 |
C9 |
121.9 |
125.2 |
| C8 |
C9 |
C8' |
126.0 |
120.0 |
| C8 |
C9 |
O9 |
116.8 |
120.0 |
| C2' |
C1' |
C6' |
116.8 |
120.2 |
| C2' |
C1' |
C7' |
121.2 |
119.9 |
| C1' |
C2' |
C3' |
121.5 |
120.6 |
| C1' |
C2' |
H2' |
119.4 |
119.7 |
| C6' |
C1' |
C7' |
121.7 |
119.9 |
| C1' |
C6' |
C5' |
121.0 |
119.6 |
| C1' |
C6' |
H6' |
120.5 |
120.2 |
| C1' |
C7' |
N1' |
118.7 |
120.0 |
| C1' |
C7' |
N2' |
123.8 |
120.0 |
| C3' |
C2' |
H2' |
119.1 |
119.7 |
| C2' |
C3' |
C4' |
118.4 |
120.0 |
| C2' |
C3' |
H3' |
121.3 |
120.0 |
| C4' |
C3' |
H3' |
120.3 |
120.0 |
| C3' |
C4' |
C5' |
122.0 |
119.5 |
| C3' |
C4' |
N3' |
127.8 |
133.2 |
| C5' |
C4' |
N3' |
110.2 |
107.3 |
| C4' |
C5' |
C6' |
120.2 |
120.0 |
| C4' |
C5' |
N4' |
108.7 |
106.1 |
| C4' |
N3' |
C8' |
102.2 |
109.8 |
| C6' |
C5' |
N4' |
131.1 |
133.9 |
| C5' |
C6' |
H6' |
118.5 |
120.2 |
| C5' |
N4' |
C8' |
103.2 |
107.1 |
| C5' |
N4' |
HN4' |
128.6 |
126.5 |
| N1' |
C7' |
N2' |
117.5 |
120.0 |
| C7' |
N1' |
H1' |
119.0 |
120.0 |
| C7' |
N2' |
H2'1 |
123.9 |
120.0 |
| C7' |
N2' |
H2'2 |
107.2 |
120.0 |
| H2'1 |
N2' |
H2'2 |
107.1 |
120.0 |
| N3' |
C8' |
N4' |
115.7 |
109.8 |
| N3' |
C8' |
C9 |
123.4 |
125.1 |
| C8' |
N4' |
HN4' |
128.2 |
126.5 |
| N4' |
C8' |
C9 |
120.8 |
125.1 |
| C8' |
C9 |
O9 |
116.6 |
120.0 |
Torsion Angles for BAO
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C1 |
C2 |
C7 |
188.0 |
180.2 |
| C2 |
C1 |
C6 |
C5 |
0.1 |
359.5 |
| C2 |
C1 |
C6 |
H6 |
180.0 |
179.6 |
| C2 |
C1 |
C7 |
N1 |
163.1 |
180.0 |
| C2 |
C1 |
C7 |
N2 |
342.3 |
-0.0 |
| C3 |
C2 |
C1 |
H2 |
180.0 |
180.0 |
| C1 |
C2 |
C3 |
C4 |
359.8 |
-0.0 |
| C1 |
C2 |
C3 |
H3 |
179.9 |
180.0 |
| C2 |
C1 |
C6 |
C7 |
171.9 |
179.8 |
| C6 |
C1 |
C2 |
C3 |
0.1 |
0.2 |
| C6 |
C1 |
C2 |
H2 |
180.1 |
180.2 |
| C6 |
C1 |
C7 |
N1 |
334.6 |
359.8 |
| C6 |
C1 |
C7 |
N2 |
153.8 |
179.8 |
| C4 |
C5 |
C6 |
C1 |
359.8 |
0.5 |
| C1 |
C6 |
C5 |
N4 |
180.3 |
180.2 |
| C5 |
C6 |
C1 |
H6 |
180.0 |
179.9 |
| C2 |
C1 |
C7 |
C6 |
188.5 |
180.2 |
| C7 |
C1 |
C2 |
C3 |
172.1 |
180.0 |
| C7 |
C1 |
C2 |
H2 |
352.1 |
-0.0 |
| C7 |
C1 |
C6 |
C5 |
188.1 |
179.8 |
| C7 |
C1 |
C6 |
H6 |
8.1 |
359.9 |
| N1 |
C7 |
C1 |
N2 |
180.7 |
180.0 |
| C1 |
C7 |
N1 |
HN1 |
271.5 |
-0.0 |
| C1 |
C7 |
N2 |
HN21 |
180.0 |
179.9 |
| C1 |
C7 |
N2 |
HN22 |
54.7 |
359.8 |
| C3 |
C2 |
C1 |
C6 |
0.1 |
0.2 |
| C3 |
C2 |
C1 |
C7 |
172.1 |
180.0 |
| C1 |
C2 |
C3 |
H2 |
180.0 |
180.0 |
| C4 |
C3 |
C2 |
H3 |
180.0 |
180.0 |
| C2 |
C3 |
C4 |
C5 |
0.0 |
-0.0 |
| C2 |
C3 |
C4 |
N3 |
180.0 |
180.0 |
| H2 |
C2 |
C1 |
C6 |
180.1 |
180.2 |
| H2 |
C2 |
C1 |
C7 |
352.1 |
360.0 |
| C1 |
C2 |
H2 |
C3 |
180.0 |
180.0 |
| H2 |
C2 |
C3 |
C4 |
179.8 |
180.0 |
| H2 |
C2 |
C3 |
H3 |
359.8 |
360.0 |
| C4 |
C3 |
C2 |
H2 |
179.8 |
180.0 |
| C2 |
C3 |
C4 |
H3 |
180.0 |
180.0 |
| C5 |
C4 |
C3 |
N3 |
180.0 |
180.0 |
| C3 |
C4 |
C5 |
C6 |
0.1 |
359.8 |
| C3 |
C4 |
C5 |
N4 |
179.8 |
180.0 |
| C3 |
C4 |
N3 |
C8 |
180.0 |
180.0 |
| H3 |
C3 |
C2 |
H2 |
359.8 |
360.0 |
| C2 |
C3 |
H3 |
C4 |
180.0 |
180.0 |
| H3 |
C3 |
C4 |
C5 |
180.0 |
180.0 |
| H3 |
C3 |
C4 |
N3 |
360.0 |
360.0 |
| C1 |
C6 |
C5 |
C4 |
359.8 |
0.5 |
| C5 |
C4 |
C3 |
H3 |
180.0 |
180.0 |
| C3 |
C4 |
C5 |
N3 |
180.0 |
180.0 |
| C5 |
C4 |
N3 |
C8 |
360.0 |
-0.0 |
| C6 |
C5 |
C4 |
N4 |
180.4 |
179.8 |
| C4 |
C5 |
C6 |
H6 |
179.8 |
180.4 |
| C4 |
C5 |
N4 |
C8 |
0.3 |
-0.0 |
| C4 |
C5 |
N4 |
HN4 |
180.4 |
180.0 |
| N3 |
C4 |
C3 |
H3 |
360.0 |
360.0 |
| C3 |
C4 |
N3 |
C5 |
180.0 |
180.0 |
| N3 |
C4 |
C5 |
C6 |
180.2 |
179.8 |
| N3 |
C4 |
C5 |
N4 |
359.8 |
360.0 |
| C4 |
N3 |
C8 |
N4 |
0.3 |
-0.0 |
| C4 |
N3 |
C8 |
C9 |
181.6 |
180.0 |
| C5 |
C6 |
C1 |
C7 |
188.1 |
179.8 |
| C1 |
C6 |
C5 |
H6 |
180.0 |
180.1 |
| C6 |
C5 |
C4 |
N3 |
180.2 |
179.8 |
| C4 |
C5 |
C6 |
N4 |
179.5 |
180.3 |
| C6 |
C5 |
N4 |
C8 |
179.9 |
180.3 |
| C6 |
C5 |
N4 |
HN4 |
359.9 |
0.3 |
| N4 |
C5 |
C4 |
N3 |
359.8 |
-0.0 |
| C4 |
C5 |
N4 |
C6 |
180.4 |
179.7 |
| N4 |
C5 |
C6 |
H6 |
0.3 |
0.0 |
| N3 |
C8 |
N4 |
C5 |
359.6 |
-0.0 |
| C8 |
N4 |
C5 |
HN4 |
180.0 |
180.0 |
| C5 |
N4 |
C8 |
C9 |
178.2 |
180.0 |
| H6 |
C6 |
C1 |
C7 |
8.1 |
359.9 |
| C1 |
C6 |
H6 |
C5 |
180.0 |
179.9 |
| H6 |
C6 |
C5 |
N4 |
0.3 |
0.0 |
| C1 |
C7 |
N1 |
N2 |
179.3 |
180.0 |
| N1 |
C7 |
N2 |
HN21 |
359.3 |
359.9 |
| N1 |
C7 |
N2 |
HN22 |
234.0 |
179.8 |
| C1 |
C7 |
N2 |
N1 |
180.7 |
180.0 |
| N2 |
C7 |
N1 |
HN1 |
92.2 |
180.0 |
| HN21 |
N2 |
C7 |
HN22 |
125.3 |
180.1 |
| HN1 |
N1 |
C7 |
N2 |
92.2 |
180.0 |
| C7 |
N2 |
HN21 |
HN22 |
234.7 |
179.9 |
| C7 |
N2 |
HN22 |
HN21 |
135.1 |
180.1 |
| C5 |
N4 |
C8 |
N3 |
359.6 |
-0.0 |
| N3 |
C8 |
N4 |
HN4 |
179.6 |
180.0 |
| N4 |
C8 |
N3 |
C9 |
178.7 |
180.0 |
| N3 |
C8 |
C9 |
C8' |
342.2 |
360.0 |
| N3 |
C8 |
C9 |
O9 |
152.8 |
180.0 |
| C5 |
N4 |
C8 |
HN4 |
180.0 |
180.0 |
| N3 |
C8 |
N4 |
C9 |
181.3 |
180.0 |
| N4 |
C8 |
C9 |
C8' |
163.6 |
180.0 |
| N4 |
C8 |
C9 |
O9 |
334.2 |
-0.0 |
| C5 |
N4 |
HN4 |
C8 |
180.0 |
180.0 |
| HN4 |
N4 |
C8 |
C9 |
358.2 |
-0.0 |
| N3 |
C8 |
C9 |
N4 |
178.6 |
180.0 |
| C9 |
C8 |
N4 |
HN4 |
358.2 |
-0.0 |
| N3' |
C8' |
C9 |
C8 |
23.4 |
359.7 |
| N4' |
C8' |
C9 |
C8 |
201.2 |
180.0 |
| C8' |
C9 |
C8 |
O9 |
189.4 |
180.0 |
| C6' |
C1' |
C2' |
C7' |
174.1 |
180.0 |
| C2' |
C1' |
C6' |
C5' |
359.9 |
-0.0 |
| C2' |
C1' |
C6' |
H6' |
179.9 |
180.0 |
| C2' |
C1' |
C7' |
N1' |
197.1 |
180.0 |
| C2' |
C1' |
C7' |
N2' |
17.8 |
-0.0 |
| C3' |
C2' |
C1' |
H2' |
180.0 |
180.0 |
| C1' |
C2' |
C3' |
C4' |
0.0 |
-0.0 |
| C1' |
C2' |
C3' |
H3' |
180.0 |
180.0 |
| C2' |
C1' |
C6' |
C7' |
186.0 |
180.0 |
| C6' |
C1' |
C2' |
C3' |
0.1 |
-0.0 |
| C6' |
C1' |
C2' |
H2' |
180.0 |
180.0 |
| C6' |
C1' |
C7' |
N1' |
23.3 |
-0.0 |
| C6' |
C1' |
C7' |
N2' |
204.0 |
180.0 |
| C4' |
C5' |
C6' |
C1' |
0.0 |
360.0 |
| C1' |
C6' |
C5' |
N4' |
179.9 |
180.0 |
| C5' |
C6' |
C1' |
H6' |
180.0 |
180.0 |
| C2' |
C1' |
C7' |
C6' |
173.8 |
180.0 |
| C7' |
C1' |
C2' |
C3' |
186.0 |
180.0 |
| C7' |
C1' |
C2' |
H2' |
6.0 |
360.0 |
| C7' |
C1' |
C6' |
C5' |
174.0 |
180.0 |
| C7' |
C1' |
C6' |
H6' |
354.0 |
360.0 |
| N1' |
C7' |
C1' |
N2' |
179.3 |
180.0 |
| C1' |
C7' |
N1' |
H1' |
65.2 |
180.1 |
| C1' |
C7' |
N2' |
H2'1 |
180.0 |
179.9 |
| C1' |
C7' |
N2' |
H2'2 |
54.7 |
-0.0 |
| C3' |
C2' |
C1' |
C6' |
0.1 |
-0.0 |
| C3' |
C2' |
C1' |
C7' |
186.0 |
180.0 |
| C1' |
C2' |
C3' |
H2' |
180.0 |
180.0 |
| C4' |
C3' |
C2' |
H3' |
180.0 |
180.0 |
| C2' |
C3' |
C4' |
C5' |
359.9 |
-0.0 |
| C2' |
C3' |
C4' |
N3' |
179.8 |
180.3 |
| H2' |
C2' |
C1' |
C6' |
180.0 |
180.0 |
| H2' |
C2' |
C1' |
C7' |
6.0 |
-0.0 |
| C1' |
C2' |
H2' |
C3' |
180.0 |
180.0 |
| H2' |
C2' |
C3' |
C4' |
180.0 |
180.0 |
| H2' |
C2' |
C3' |
H3' |
0.0 |
360.0 |
| C4' |
C3' |
C2' |
H2' |
180.0 |
180.0 |
| C2' |
C3' |
C4' |
H3' |
180.0 |
180.0 |
| C5' |
C4' |
C3' |
N3' |
180.1 |
179.7 |
| C3' |
C4' |
C5' |
C6' |
0.1 |
360.0 |
| C3' |
C4' |
C5' |
N4' |
180.1 |
180.0 |
| C3' |
C4' |
N3' |
C8' |
180.3 |
180.1 |
| H3' |
C3' |
C2' |
H2' |
0.0 |
-0.0 |
| C2' |
C3' |
H3' |
C4' |
180.0 |
180.0 |
| H3' |
C3' |
C4' |
C5' |
179.9 |
180.0 |
| H3' |
C3' |
C4' |
N3' |
359.8 |
0.3 |
| C1' |
C6' |
C5' |
C4' |
0.0 |
-0.0 |
| C5' |
C4' |
C3' |
H3' |
179.9 |
180.0 |
| C3' |
C4' |
C5' |
N3' |
179.9 |
180.2 |
| C5' |
C4' |
N3' |
C8' |
0.2 |
0.4 |
| C6' |
C5' |
C4' |
N4' |
180.0 |
180.0 |
| C4' |
C5' |
C6' |
H6' |
180.0 |
180.0 |
| C4' |
C5' |
N4' |
C8' |
359.5 |
-0.0 |
| C4' |
C5' |
N4' |
HN4' |
179.5 |
180.0 |
| N3' |
C4' |
C3' |
H3' |
359.8 |
0.3 |
| C3' |
C4' |
N3' |
C5' |
180.1 |
179.7 |
| N3' |
C4' |
C5' |
C6' |
180.2 |
179.8 |
| N3' |
C4' |
C5' |
N4' |
0.2 |
359.8 |
| C4' |
N3' |
C8' |
N4' |
359.5 |
359.6 |
| C4' |
N3' |
C8' |
C9 |
177.3 |
179.8 |
| C5' |
C6' |
C1' |
C7' |
174.0 |
180.0 |
| C1' |
C6' |
C5' |
H6' |
180.0 |
180.0 |
| C6' |
C5' |
C4' |
N3' |
180.2 |
179.8 |
| C4' |
C5' |
C6' |
N4' |
180.1 |
180.0 |
| C6' |
C5' |
N4' |
C8' |
179.5 |
180.0 |
| C6' |
C5' |
N4' |
HN4' |
359.5 |
360.0 |
| N4' |
C5' |
C4' |
N3' |
0.2 |
359.8 |
| C4' |
C5' |
N4' |
C6' |
180.0 |
180.0 |
| N4' |
C5' |
C6' |
H6' |
360.0 |
-0.0 |
| N3' |
C8' |
N4' |
C5' |
0.7 |
0.2 |
| C8' |
N4' |
C5' |
HN4' |
180.0 |
180.0 |
| C5' |
N4' |
C8' |
C9 |
182.8 |
180.0 |
| H6' |
C6' |
C1' |
C7' |
354.0 |
360.0 |
| C1' |
C6' |
H6' |
C5' |
180.0 |
180.0 |
| H6' |
C6' |
C5' |
N4' |
360.0 |
360.0 |
| C1' |
C7' |
N1' |
N2' |
180.7 |
180.0 |
| N1' |
C7' |
N2' |
H2'1 |
0.7 |
359.9 |
| N1' |
C7' |
N2' |
H2'2 |
235.4 |
180.0 |
| C1' |
C7' |
N2' |
N1' |
179.3 |
180.0 |
| N2' |
C7' |
N1' |
H1' |
244.5 |
0.1 |
| H2'1 |
N2' |
C7' |
H2'2 |
125.3 |
179.9 |
| H1' |
N1' |
C7' |
N2' |
244.5 |
0.1 |
| C7' |
N2' |
H2'1 |
H2'2 |
234.7 |
180.1 |
| C7' |
N2' |
H2'2 |
H2'1 |
134.8 |
179.9 |
| C8 |
C9 |
C8' |
N3' |
23.4 |
359.7 |
| C5' |
N4' |
C8' |
N3' |
0.7 |
0.2 |
| N3' |
C8' |
N4' |
HN4' |
180.7 |
180.2 |
| N4' |
C8' |
N3' |
C9 |
182.1 |
179.8 |
| N3' |
C8' |
C9 |
O9 |
212.8 |
179.7 |
| C8 |
C9 |
C8' |
N4' |
201.2 |
180.0 |
| C5' |
N4' |
C8' |
HN4' |
180.0 |
180.0 |
| N3' |
C8' |
N4' |
C9 |
177.9 |
180.2 |
| N4' |
C8' |
C9 |
O9 |
30.6 |
-0.0 |
| C5' |
N4' |
HN4' |
C8' |
180.0 |
180.0 |
| HN4' |
N4' |
C8' |
C9 |
2.8 |
-0.0 |
| C8 |
C9 |
C8' |
O9 |
170.6 |
180.0 |
| N3' |
C8' |
C9 |
N4' |
182.3 |
179.7 |
| C9 |
C8' |
N4' |
HN4' |
2.8 |
-0.0 |
| C8 |
C9 |
O9 |
C8' |
188.5 |
180.0 |