PDB Chemical Component BAK

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for BAK

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.438 1.402
C1 C6 1.424 1.392
C1 C7 1.418 1.478
C2 C3 1.406 1.361
C2 H2 1.078 1.080
C3 C4 1.389 1.404
C3 H3 1.079 1.079
C4 C5 1.354 1.411
C4 N3 1.296 1.343
C5 C6 1.379 1.387
C5 N4 1.323 1.377
C6 H6 1.079 1.079
C7 N1 1.302 1.332
C7 N2 1.311 1.332
C8 C9 1.444 1.478
C8 N3 1.295 1.311
C8 N4 1.312 1.369
C9 C8' 1.449 1.478
C9 O9 1.218 1.216
N1 HH11 0.995 0.970
N1 HH12 0.995 0.971
N2 HH21 1.013 0.971
N2 HH22 0.993 0.970
N4 HN4 1.019 0.970
C1' C2' 1.431 1.402
C1' C6' 1.437 1.392
C1' C7' 1.403 1.479
C2' C3' 1.403 1.360
C2' H2' 1.079 1.080
C3' C4' 1.384 1.403
C3' H3' 1.079 1.081
C4' C5' 1.330 1.412
C4' N3' 1.296 1.343
C5' C6' 1.391 1.386
C5' N4' 1.316 1.376
C6' H6' 1.080 1.080
C7' N1' 1.315 1.332
C7' N2' 1.305 1.331
C8' N3' 1.282 1.312
C8' N4' 1.304 1.369
N1' H1'1 0.999 0.970
N1' H1'2 1.008 0.971
N2' H2'1 1.008 0.971
N2' H2'2 0.996 0.970
N4' HN4' 1.019 0.970

Bond Angles for BAK

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 C6 117.6 120.2
C2 C1 C7 122.3 119.9
C1 C2 C3 122.3 120.6
C1 C2 H2 119.4 119.7
C6 C1 C7 120.1 119.9
C1 C6 C5 118.9 119.6
C1 C6 H6 121.3 120.2
C1 C7 N1 119.3 120.0
C1 C7 N2 121.5 120.0
C3 C2 H2 118.3 119.7
C2 C3 C4 115.8 120.0
C2 C3 H3 122.0 120.0
C4 C3 H3 122.2 120.0
C3 C4 C5 123.8 119.6
C3 C4 N3 129.9 133.2
C5 C4 N3 106.4 107.2
C4 C5 C6 121.6 120.0
C4 C5 N4 108.8 106.2
C4 N3 C8 108.8 109.8
C6 C5 N4 129.6 133.9
C5 C6 H6 119.9 120.2
C5 N4 C8 105.4 107.0
C5 N4 HN4 127.6 126.5
N1 C7 N2 119.2 120.0
C7 N1 HH11 120.7 120.0
C7 N1 HH12 123.1 120.0
C7 N2 HH21 120.0 120.1
C7 N2 HH22 122.2 120.0
C9 C8 N3 124.1 125.1
C9 C8 N4 125.1 125.1
C8 C9 C8' 129.5 120.0
C8 C9 O9 115.1 120.0
N3 C8 N4 110.7 109.8
C8 N4 HN4 127.0 126.5
C8' C9 O9 115.4 120.0
C9 C8' N3' 123.7 125.1
C9 C8' N4' 127.8 125.2
HH11 N1 HH12 116.2 120.0
HH21 N2 HH22 117.7 119.9
C2' C1' C6' 117.4 120.2
C2' C1' C7' 121.0 119.9
C1' C2' C3' 121.7 120.6
C1' C2' H2' 120.2 119.7
C6' C1' C7' 121.6 119.9
C1' C6' C5' 118.7 119.6
C1' C6' H6' 121.2 120.2
C1' C7' N1' 120.7 119.9
C1' C7' N2' 119.1 120.0
C3' C2' H2' 118.1 119.7
C2' C3' C4' 116.7 120.1
C2' C3' H3' 121.5 120.0
C4' C3' H3' 121.8 119.9
C3' C4' C5' 124.0 119.5
C3' C4' N3' 129.2 133.2
C5' C4' N3' 106.8 107.2
C4' C5' C6' 121.5 119.9
C4' C5' N4' 107.3 106.2
C4' N3' C8' 109.7 109.8
C6' C5' N4' 131.2 133.9
C5' C6' H6' 120.1 120.2
C5' N4' C8' 107.6 107.1
C5' N4' HN4' 126.5 126.5
N1' C7' N2' 120.2 120.1
C7' N1' H1'1 120.0 120.1
C7' N1' H1'2 124.3 119.9
C7' N2' H2'1 118.9 120.0
C7' N2' H2'2 122.4 120.1
N3' C8' N4' 108.4 109.7
C8' N4' HN4' 125.8 126.4
H1'1 N1' H1'2 115.7 120.0
H2'1 N2' H2'2 116.7 119.9

Torsion Angles for BAK

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 C1 C2 C7 179.9 180.3
C2 C1 C6 C5 359.9 359.5
C2 C1 C6 H6 179.7 179.7
C2 C1 C7 N1 167.9 180.0
C2 C1 C7 N2 348.0 360.0
C3 C2 C1 H2 180.1 180.0
C1 C2 C3 C4 359.9 0.0
C1 C2 C3 H3 180.3 180.0
C2 C1 C6 C7 180.1 179.7
C6 C1 C2 C3 0.2 0.3
C6 C1 C2 H2 180.1 180.3
C6 C1 C7 N1 348.0 359.7
C6 C1 C7 N2 168.1 179.7
C4 C5 C6 C1 0.0 0.5
C1 C6 C5 N4 181.3 180.2
C5 C6 C1 H6 180.2 179.8
C2 C1 C7 C6 179.9 180.3
C7 C1 C2 C3 180.2 180.0
C7 C1 C2 H2 0.2 0.0
C7 C1 C6 C5 179.8 179.7
C7 C1 C6 H6 359.6 359.9
N1 C7 C1 N2 179.9 180.0
C1 C7 N1 HH11 356.0 360.0
C1 C7 N1 HH12 173.5 180.0
C1 C7 N2 HH21 2.8 180.0
C1 C7 N2 HH22 179.2 359.7
C3 C2 C1 C6 0.2 0.3
C3 C2 C1 C7 180.2 180.0
C1 C2 C3 H2 179.9 180.0
C4 C3 C2 H3 179.6 180.1
C2 C3 C4 C5 359.9 360.0
C2 C3 C4 N3 178.6 180.0
H2 C2 C1 C6 180.1 180.3
H2 C2 C1 C7 0.2 0.0
C1 C2 H2 C3 180.1 180.0
H2 C2 C3 C4 180.0 180.0
H2 C2 C3 H3 0.4 359.9
C4 C3 C2 H2 180.0 180.0
C2 C3 C4 H3 180.4 179.9
C5 C4 C3 N3 181.3 180.0
C3 C4 C5 C6 0.1 359.8
C3 C4 C5 N4 179.1 180.0
C3 C4 N3 C8 181.4 180.0
H3 C3 C2 H2 0.4 359.9
C2 C3 H3 C4 179.6 180.1
H3 C3 C4 C5 179.5 180.0
H3 C3 C4 N3 358.2 0.1
C1 C6 C5 C4 0.0 0.5
C5 C4 C3 H3 179.5 180.0
C3 C4 C5 N3 179.0 180.0
C5 C4 N3 C8 0.3 0.0
C6 C5 C4 N4 181.0 179.8
C4 C5 C6 H6 180.2 180.3
C4 C5 N4 C8 359.6 0.0
C4 C5 N4 HN4 179.5 179.9
N3 C4 C3 H3 358.2 0.1
C3 C4 N3 C5 181.1 180.0
N3 C4 C5 C6 181.1 179.8
N3 C4 C5 N4 0.1 360.0
C9 C8 N3 C4 175.3 180.0
C4 N3 C8 N4 359.4 0.0
C5 C6 C1 C7 179.8 179.7
C1 C6 C5 H6 179.8 180.2
C6 C5 C4 N3 181.1 179.8
C4 C5 C6 N4 178.8 180.3
C6 C5 N4 C8 178.4 180.3
C6 C5 N4 HN4 358.4 0.2
N4 C5 C4 N3 0.1 360.0
C4 C5 N4 C6 181.1 179.8
N4 C5 C6 H6 1.5 0.0
C9 C8 N4 C5 184.8 180.0
N3 C8 N4 C5 0.6 360.0
C8 N4 C5 HN4 180.0 180.1
H6 C6 C1 C7 359.6 359.9
C1 C6 H6 C5 180.2 179.8
H6 C6 C5 N4 1.5 0.0
C1 C7 N1 N2 180.1 180.0
N1 C7 N2 HH21 182.9 0.0
N1 C7 N2 HH22 359.3 179.7
HH11 N1 C7 HH12 182.5 180.0
C1 C7 N2 N1 179.9 180.0
N2 C7 N1 HH11 176.0 180.0
N2 C7 N1 HH12 353.5 0.0
HH21 N2 C7 HH22 183.6 180.3
C4 N3 C8 C9 175.3 180.0
C5 N4 C8 C9 184.8 180.0
N3 C8 C9 N4 184.7 180.0
C9 C8 N4 HN4 4.8 0.0
C8' C9 C8 O9 179.4 179.9
C8 C9 C8' N3' 358.6 359.8
C8 C9 C8' N4' 177.8 180.0
C5 N4 C8 N3 0.6 360.0
C9 C8 N3 N4 175.9 180.0
N3 C8 C9 C8' 355.2 360.0
N3 C8 C9 O9 175.9 180.0
N3 C8 N4 HN4 180.7 180.1
C5 N4 C8 HN4 180.0 179.9
C9 C8 N4 N3 184.1 180.0
N4 C8 C9 C8' 170.6 180.0
N4 C8 C9 O9 351.2 0.1
C8' C9 C8 N3 355.2 360.0
C8' C9 C8 N4 170.6 180.0
C8 C9 C8' O9 180.6 180.1
C4' N3' C8' C9 179.9 179.8
C5' N4' C8' C9 180.2 180.0
N3' C8' C9 N4' 180.8 179.7
C9 C8' N4' HN4' 0.1 0.0
O9 C9 C8 N3 175.9 180.0
O9 C9 C8 N4 351.2 0.1
C8 C9 O9 C8' 179.5 179.9
O9 C9 C8' N3' 178.0 179.7
O9 C9 C8' N4' 357.2 359.9
HH11 N1 C7 N2 176.0 180.0
C7 N1 HH11 HH12 177.7 180.0
HH12 N1 C7 N2 353.5 0.0
C7 N1 HH12 HH11 182.4 180.0
C7 N2 HH21 HH22 176.6 179.7
C7 N2 HH22 HH21 183.5 180.3
C5 N4 HN4 C8 180.1 180.1
C6' C1' C2' C7' 180.2 179.9
C2' C1' C6' C5' 0.3 0.0
C2' C1' C6' H6' 179.8 180.0
C2' C1' C7' N1' 182.4 329.9
C2' C1' C7' N2' 2.1 150.0
C3' C2' C1' H2' 180.1 180.1
C1' C2' C3' C4' 359.9 360.0
C1' C2' C3' H3' 180.0 179.9
C2' C1' C6' C7' 179.8 180.1
C6' C1' C2' C3' 359.9 360.0
C6' C1' C2' H2' 179.8 179.9
C6' C1' C7' N1' 2.1 150.0
C6' C1' C7' N2' 181.9 330.1
C4' C5' C6' C1' 359.6 360.0
C1' C6' C5' N4' 179.9 179.9
C5' C6' C1' H6' 180.6 180.0
C2' C1' C7' C6' 180.2 179.9
C7' C1' C2' C3' 179.7 180.1
C7' C1' C2' H2' 359.6 360.0
C7' C1' C6' C5' 180.6 180.0
C7' C1' C6' H6' 0.0 359.9
N1' C7' C1' N2' 180.2 179.9
C1' C7' N1' H1'1 358.6 0.1
C1' C7' N1' H1'2 179.6 180.0
C1' C7' N2' H2'1 8.6 180.0
C1' C7' N2' H2'2 172.2 359.9
C3' C2' C1' C6' 359.9 360.0
C3' C2' C1' C7' 179.7 180.1
C1' C2' C3' H2' 179.9 179.9
C4' C3' C2' H3' 179.9 180.1
C2' C3' C4' C5' 0.0 0.1
C2' C3' C4' N3' 180.0 180.4
H2' C2' C1' C6' 179.8 179.9
H2' C2' C1' C7' 359.6 360.0
C1' C2' H2' C3' 180.1 180.1
H2' C2' C3' C4' 180.0 180.1
H2' C2' C3' H3' 0.1 360.0
C4' C3' C2' H2' 180.0 180.1
C2' C3' C4' H3' 180.1 179.9
C5' C4' C3' N3' 180.0 179.6
C3' C4' C5' C6' 0.3 360.0
C3' C4' C5' N4' 180.0 180.0
C3' C4' N3' C8' 179.7 180.1
H3' C3' C2' H2' 0.1 360.0
C2' C3' H3' C4' 179.9 180.1
H3' C3' C4' C5' 179.9 180.1
H3' C3' C4' N3' 359.9 0.5
C1' C6' C5' C4' 359.6 360.0
C5' C4' C3' H3' 179.9 180.1
C3' C4' C5' N3' 180.0 180.3
C5' C4' N3' C8' 359.6 0.4
C6' C5' C4' N4' 180.2 180.0
C4' C5' C6' H6' 180.1 180.0
C4' C5' N4' C8' 0.3 360.0
C4' C5' N4' HN4' 180.3 180.0
C9 C8' N3' C4' 179.9 179.8
N3' C4' C3' H3' 359.9 0.5
C3' C4' N3' C5' 180.0 179.7
N3' C4' C5' C6' 180.3 179.7
N3' C4' C5' N4' 0.0 359.7
C4' N3' C8' N4' 0.5 359.6
C5' C6' C1' C7' 180.6 180.0
C1' C6' C5' H6' 179.5 180.0
C6' C5' C4' N3' 180.3 179.7
C4' C5' C6' N4' 179.7 180.1
C6' C5' N4' C8' 180.0 180.1
C6' C5' N4' HN4' 0.0 0.1
C9 C8' N4' C5' 180.2 180.0
N4' C5' C4' N3' 0.0 359.7
C4' C5' N4' C6' 180.3 179.9
N4' C5' C6' H6' 0.4 359.9
N3' C8' N4' C5' 359.5 0.3
C8' N4' C5' HN4' 180.0 180.0
H6' C6' C1' C7' 0.0 359.9
C1' C6' H6' C5' 180.6 180.0
H6' C6' C5' N4' 0.4 359.9
C1' C7' N1' N2' 179.8 180.1
N1' C7' N2' H2'1 188.4 0.0
N1' C7' N2' H2'2 352.0 180.0
H1'1 N1' C7' H1'2 179.0 180.1
C1' C7' N2' N1' 180.2 179.9
N2' C7' N1' H1'1 178.8 180.0
N2' C7' N1' H1'2 359.8 360.0
H2'1 N2' C7' H2'2 196.4 180.0
N3' C8' C9 O9 178.0 179.7
C9 C8' N3' N4' 179.3 180.2
C5' N4' C8' N3' 359.5 0.3
N3' C8' N4' HN4' 179.5 180.2
N4' C8' C9 O9 357.2 359.9
C9 C8' N4' N3' 180.7 179.8
C5' N4' C8' HN4' 180.0 180.0
H1'1 N1' C7' N2' 178.8 180.0
C7' N1' H1'1 H1'2 180.9 179.9
H1'2 N1' C7' N2' 359.8 360.0
C7' N1' H1'2 H1'1 179.0 180.1
C7' N2' H2'1 H2'2 164.5 180.0
C7' N2' H2'2 H2'1 196.1 180.0
C5' N4' HN4' C8' 180.0 180.0