PDB Chemical Component BAK
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for BAK
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
1.438 |
1.402 |
C1 |
C6 |
1.424 |
1.392 |
C1 |
C7 |
1.418 |
1.478 |
C2 |
C3 |
1.406 |
1.361 |
C2 |
H2 |
1.078 |
1.080 |
C3 |
C4 |
1.389 |
1.404 |
C3 |
H3 |
1.079 |
1.079 |
C4 |
C5 |
1.354 |
1.411 |
C4 |
N3 |
1.296 |
1.343 |
C5 |
C6 |
1.379 |
1.387 |
C5 |
N4 |
1.323 |
1.377 |
C6 |
H6 |
1.079 |
1.079 |
C7 |
N1 |
1.302 |
1.332 |
C7 |
N2 |
1.311 |
1.332 |
C8 |
C9 |
1.444 |
1.478 |
C8 |
N3 |
1.295 |
1.311 |
C8 |
N4 |
1.312 |
1.369 |
C9 |
C8' |
1.449 |
1.478 |
C9 |
O9 |
1.218 |
1.216 |
N1 |
HH11 |
0.995 |
0.970 |
N1 |
HH12 |
0.995 |
0.971 |
N2 |
HH21 |
1.013 |
0.971 |
N2 |
HH22 |
0.993 |
0.970 |
N4 |
HN4 |
1.019 |
0.970 |
C1' |
C2' |
1.431 |
1.402 |
C1' |
C6' |
1.437 |
1.392 |
C1' |
C7' |
1.403 |
1.479 |
C2' |
C3' |
1.403 |
1.360 |
C2' |
H2' |
1.079 |
1.080 |
C3' |
C4' |
1.384 |
1.403 |
C3' |
H3' |
1.079 |
1.081 |
C4' |
C5' |
1.330 |
1.412 |
C4' |
N3' |
1.296 |
1.343 |
C5' |
C6' |
1.391 |
1.386 |
C5' |
N4' |
1.316 |
1.376 |
C6' |
H6' |
1.080 |
1.080 |
C7' |
N1' |
1.315 |
1.332 |
C7' |
N2' |
1.305 |
1.331 |
C8' |
N3' |
1.282 |
1.312 |
C8' |
N4' |
1.304 |
1.369 |
N1' |
H1'1 |
0.999 |
0.970 |
N1' |
H1'2 |
1.008 |
0.971 |
N2' |
H2'1 |
1.008 |
0.971 |
N2' |
H2'2 |
0.996 |
0.970 |
N4' |
HN4' |
1.019 |
0.970 |
Bond Angles for BAK
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
C6 |
117.6 |
120.2 |
C2 |
C1 |
C7 |
122.3 |
119.9 |
C1 |
C2 |
C3 |
122.3 |
120.6 |
C1 |
C2 |
H2 |
119.4 |
119.7 |
C6 |
C1 |
C7 |
120.1 |
119.9 |
C1 |
C6 |
C5 |
118.9 |
119.6 |
C1 |
C6 |
H6 |
121.3 |
120.2 |
C1 |
C7 |
N1 |
119.3 |
120.0 |
C1 |
C7 |
N2 |
121.5 |
120.0 |
C3 |
C2 |
H2 |
118.3 |
119.7 |
C2 |
C3 |
C4 |
115.8 |
120.0 |
C2 |
C3 |
H3 |
122.0 |
120.0 |
C4 |
C3 |
H3 |
122.2 |
120.0 |
C3 |
C4 |
C5 |
123.8 |
119.6 |
C3 |
C4 |
N3 |
129.9 |
133.2 |
C5 |
C4 |
N3 |
106.4 |
107.2 |
C4 |
C5 |
C6 |
121.6 |
120.0 |
C4 |
C5 |
N4 |
108.8 |
106.2 |
C4 |
N3 |
C8 |
108.8 |
109.8 |
C6 |
C5 |
N4 |
129.6 |
133.9 |
C5 |
C6 |
H6 |
119.9 |
120.2 |
C5 |
N4 |
C8 |
105.4 |
107.0 |
C5 |
N4 |
HN4 |
127.6 |
126.5 |
N1 |
C7 |
N2 |
119.2 |
120.0 |
C7 |
N1 |
HH11 |
120.7 |
120.0 |
C7 |
N1 |
HH12 |
123.1 |
120.0 |
C7 |
N2 |
HH21 |
120.0 |
120.1 |
C7 |
N2 |
HH22 |
122.2 |
120.0 |
C9 |
C8 |
N3 |
124.1 |
125.1 |
C9 |
C8 |
N4 |
125.1 |
125.1 |
C8 |
C9 |
C8' |
129.5 |
120.0 |
C8 |
C9 |
O9 |
115.1 |
120.0 |
N3 |
C8 |
N4 |
110.7 |
109.8 |
C8 |
N4 |
HN4 |
127.0 |
126.5 |
C8' |
C9 |
O9 |
115.4 |
120.0 |
C9 |
C8' |
N3' |
123.7 |
125.1 |
C9 |
C8' |
N4' |
127.8 |
125.2 |
HH11 |
N1 |
HH12 |
116.2 |
120.0 |
HH21 |
N2 |
HH22 |
117.7 |
119.9 |
C2' |
C1' |
C6' |
117.4 |
120.2 |
C2' |
C1' |
C7' |
121.0 |
119.9 |
C1' |
C2' |
C3' |
121.7 |
120.6 |
C1' |
C2' |
H2' |
120.2 |
119.7 |
C6' |
C1' |
C7' |
121.6 |
119.9 |
C1' |
C6' |
C5' |
118.7 |
119.6 |
C1' |
C6' |
H6' |
121.2 |
120.2 |
C1' |
C7' |
N1' |
120.7 |
119.9 |
C1' |
C7' |
N2' |
119.1 |
120.0 |
C3' |
C2' |
H2' |
118.1 |
119.7 |
C2' |
C3' |
C4' |
116.7 |
120.1 |
C2' |
C3' |
H3' |
121.5 |
120.0 |
C4' |
C3' |
H3' |
121.8 |
119.9 |
C3' |
C4' |
C5' |
124.0 |
119.5 |
C3' |
C4' |
N3' |
129.2 |
133.2 |
C5' |
C4' |
N3' |
106.8 |
107.2 |
C4' |
C5' |
C6' |
121.5 |
119.9 |
C4' |
C5' |
N4' |
107.3 |
106.2 |
C4' |
N3' |
C8' |
109.7 |
109.8 |
C6' |
C5' |
N4' |
131.2 |
133.9 |
C5' |
C6' |
H6' |
120.1 |
120.2 |
C5' |
N4' |
C8' |
107.6 |
107.1 |
C5' |
N4' |
HN4' |
126.5 |
126.5 |
N1' |
C7' |
N2' |
120.2 |
120.1 |
C7' |
N1' |
H1'1 |
120.0 |
120.1 |
C7' |
N1' |
H1'2 |
124.3 |
119.9 |
C7' |
N2' |
H2'1 |
118.9 |
120.0 |
C7' |
N2' |
H2'2 |
122.4 |
120.1 |
N3' |
C8' |
N4' |
108.4 |
109.7 |
C8' |
N4' |
HN4' |
125.8 |
126.4 |
H1'1 |
N1' |
H1'2 |
115.7 |
120.0 |
H2'1 |
N2' |
H2'2 |
116.7 |
119.9 |
Torsion Angles for BAK
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C6 |
C1 |
C2 |
C7 |
179.9 |
180.3 |
C2 |
C1 |
C6 |
C5 |
359.9 |
359.5 |
C2 |
C1 |
C6 |
H6 |
179.7 |
179.7 |
C2 |
C1 |
C7 |
N1 |
167.9 |
180.0 |
C2 |
C1 |
C7 |
N2 |
348.0 |
360.0 |
C3 |
C2 |
C1 |
H2 |
180.1 |
180.0 |
C1 |
C2 |
C3 |
C4 |
359.9 |
0.0 |
C1 |
C2 |
C3 |
H3 |
180.3 |
180.0 |
C2 |
C1 |
C6 |
C7 |
180.1 |
179.7 |
C6 |
C1 |
C2 |
C3 |
0.2 |
0.3 |
C6 |
C1 |
C2 |
H2 |
180.1 |
180.3 |
C6 |
C1 |
C7 |
N1 |
348.0 |
359.7 |
C6 |
C1 |
C7 |
N2 |
168.1 |
179.7 |
C4 |
C5 |
C6 |
C1 |
0.0 |
0.5 |
C1 |
C6 |
C5 |
N4 |
181.3 |
180.2 |
C5 |
C6 |
C1 |
H6 |
180.2 |
179.8 |
C2 |
C1 |
C7 |
C6 |
179.9 |
180.3 |
C7 |
C1 |
C2 |
C3 |
180.2 |
180.0 |
C7 |
C1 |
C2 |
H2 |
0.2 |
0.0 |
C7 |
C1 |
C6 |
C5 |
179.8 |
179.7 |
C7 |
C1 |
C6 |
H6 |
359.6 |
359.9 |
N1 |
C7 |
C1 |
N2 |
179.9 |
180.0 |
C1 |
C7 |
N1 |
HH11 |
356.0 |
360.0 |
C1 |
C7 |
N1 |
HH12 |
173.5 |
180.0 |
C1 |
C7 |
N2 |
HH21 |
2.8 |
180.0 |
C1 |
C7 |
N2 |
HH22 |
179.2 |
359.7 |
C3 |
C2 |
C1 |
C6 |
0.2 |
0.3 |
C3 |
C2 |
C1 |
C7 |
180.2 |
180.0 |
C1 |
C2 |
C3 |
H2 |
179.9 |
180.0 |
C4 |
C3 |
C2 |
H3 |
179.6 |
180.1 |
C2 |
C3 |
C4 |
C5 |
359.9 |
360.0 |
C2 |
C3 |
C4 |
N3 |
178.6 |
180.0 |
H2 |
C2 |
C1 |
C6 |
180.1 |
180.3 |
H2 |
C2 |
C1 |
C7 |
0.2 |
0.0 |
C1 |
C2 |
H2 |
C3 |
180.1 |
180.0 |
H2 |
C2 |
C3 |
C4 |
180.0 |
180.0 |
H2 |
C2 |
C3 |
H3 |
0.4 |
359.9 |
C4 |
C3 |
C2 |
H2 |
180.0 |
180.0 |
C2 |
C3 |
C4 |
H3 |
180.4 |
179.9 |
C5 |
C4 |
C3 |
N3 |
181.3 |
180.0 |
C3 |
C4 |
C5 |
C6 |
0.1 |
359.8 |
C3 |
C4 |
C5 |
N4 |
179.1 |
180.0 |
C3 |
C4 |
N3 |
C8 |
181.4 |
180.0 |
H3 |
C3 |
C2 |
H2 |
0.4 |
359.9 |
C2 |
C3 |
H3 |
C4 |
179.6 |
180.1 |
H3 |
C3 |
C4 |
C5 |
179.5 |
180.0 |
H3 |
C3 |
C4 |
N3 |
358.2 |
0.1 |
C1 |
C6 |
C5 |
C4 |
0.0 |
0.5 |
C5 |
C4 |
C3 |
H3 |
179.5 |
180.0 |
C3 |
C4 |
C5 |
N3 |
179.0 |
180.0 |
C5 |
C4 |
N3 |
C8 |
0.3 |
0.0 |
C6 |
C5 |
C4 |
N4 |
181.0 |
179.8 |
C4 |
C5 |
C6 |
H6 |
180.2 |
180.3 |
C4 |
C5 |
N4 |
C8 |
359.6 |
0.0 |
C4 |
C5 |
N4 |
HN4 |
179.5 |
179.9 |
N3 |
C4 |
C3 |
H3 |
358.2 |
0.1 |
C3 |
C4 |
N3 |
C5 |
181.1 |
180.0 |
N3 |
C4 |
C5 |
C6 |
181.1 |
179.8 |
N3 |
C4 |
C5 |
N4 |
0.1 |
360.0 |
C9 |
C8 |
N3 |
C4 |
175.3 |
180.0 |
C4 |
N3 |
C8 |
N4 |
359.4 |
0.0 |
C5 |
C6 |
C1 |
C7 |
179.8 |
179.7 |
C1 |
C6 |
C5 |
H6 |
179.8 |
180.2 |
C6 |
C5 |
C4 |
N3 |
181.1 |
179.8 |
C4 |
C5 |
C6 |
N4 |
178.8 |
180.3 |
C6 |
C5 |
N4 |
C8 |
178.4 |
180.3 |
C6 |
C5 |
N4 |
HN4 |
358.4 |
0.2 |
N4 |
C5 |
C4 |
N3 |
0.1 |
360.0 |
C4 |
C5 |
N4 |
C6 |
181.1 |
179.8 |
N4 |
C5 |
C6 |
H6 |
1.5 |
0.0 |
C9 |
C8 |
N4 |
C5 |
184.8 |
180.0 |
N3 |
C8 |
N4 |
C5 |
0.6 |
360.0 |
C8 |
N4 |
C5 |
HN4 |
180.0 |
180.1 |
H6 |
C6 |
C1 |
C7 |
359.6 |
359.9 |
C1 |
C6 |
H6 |
C5 |
180.2 |
179.8 |
H6 |
C6 |
C5 |
N4 |
1.5 |
0.0 |
C1 |
C7 |
N1 |
N2 |
180.1 |
180.0 |
N1 |
C7 |
N2 |
HH21 |
182.9 |
0.0 |
N1 |
C7 |
N2 |
HH22 |
359.3 |
179.7 |
HH11 |
N1 |
C7 |
HH12 |
182.5 |
180.0 |
C1 |
C7 |
N2 |
N1 |
179.9 |
180.0 |
N2 |
C7 |
N1 |
HH11 |
176.0 |
180.0 |
N2 |
C7 |
N1 |
HH12 |
353.5 |
0.0 |
HH21 |
N2 |
C7 |
HH22 |
183.6 |
180.3 |
C4 |
N3 |
C8 |
C9 |
175.3 |
180.0 |
C5 |
N4 |
C8 |
C9 |
184.8 |
180.0 |
N3 |
C8 |
C9 |
N4 |
184.7 |
180.0 |
C9 |
C8 |
N4 |
HN4 |
4.8 |
0.0 |
C8' |
C9 |
C8 |
O9 |
179.4 |
179.9 |
C8 |
C9 |
C8' |
N3' |
358.6 |
359.8 |
C8 |
C9 |
C8' |
N4' |
177.8 |
180.0 |
C5 |
N4 |
C8 |
N3 |
0.6 |
360.0 |
C9 |
C8 |
N3 |
N4 |
175.9 |
180.0 |
N3 |
C8 |
C9 |
C8' |
355.2 |
360.0 |
N3 |
C8 |
C9 |
O9 |
175.9 |
180.0 |
N3 |
C8 |
N4 |
HN4 |
180.7 |
180.1 |
C5 |
N4 |
C8 |
HN4 |
180.0 |
179.9 |
C9 |
C8 |
N4 |
N3 |
184.1 |
180.0 |
N4 |
C8 |
C9 |
C8' |
170.6 |
180.0 |
N4 |
C8 |
C9 |
O9 |
351.2 |
0.1 |
C8' |
C9 |
C8 |
N3 |
355.2 |
360.0 |
C8' |
C9 |
C8 |
N4 |
170.6 |
180.0 |
C8 |
C9 |
C8' |
O9 |
180.6 |
180.1 |
C4' |
N3' |
C8' |
C9 |
179.9 |
179.8 |
C5' |
N4' |
C8' |
C9 |
180.2 |
180.0 |
N3' |
C8' |
C9 |
N4' |
180.8 |
179.7 |
C9 |
C8' |
N4' |
HN4' |
0.1 |
0.0 |
O9 |
C9 |
C8 |
N3 |
175.9 |
180.0 |
O9 |
C9 |
C8 |
N4 |
351.2 |
0.1 |
C8 |
C9 |
O9 |
C8' |
179.5 |
179.9 |
O9 |
C9 |
C8' |
N3' |
178.0 |
179.7 |
O9 |
C9 |
C8' |
N4' |
357.2 |
359.9 |
HH11 |
N1 |
C7 |
N2 |
176.0 |
180.0 |
C7 |
N1 |
HH11 |
HH12 |
177.7 |
180.0 |
HH12 |
N1 |
C7 |
N2 |
353.5 |
0.0 |
C7 |
N1 |
HH12 |
HH11 |
182.4 |
180.0 |
C7 |
N2 |
HH21 |
HH22 |
176.6 |
179.7 |
C7 |
N2 |
HH22 |
HH21 |
183.5 |
180.3 |
C5 |
N4 |
HN4 |
C8 |
180.1 |
180.1 |
C6' |
C1' |
C2' |
C7' |
180.2 |
179.9 |
C2' |
C1' |
C6' |
C5' |
0.3 |
0.0 |
C2' |
C1' |
C6' |
H6' |
179.8 |
180.0 |
C2' |
C1' |
C7' |
N1' |
182.4 |
329.9 |
C2' |
C1' |
C7' |
N2' |
2.1 |
150.0 |
C3' |
C2' |
C1' |
H2' |
180.1 |
180.1 |
C1' |
C2' |
C3' |
C4' |
359.9 |
360.0 |
C1' |
C2' |
C3' |
H3' |
180.0 |
179.9 |
C2' |
C1' |
C6' |
C7' |
179.8 |
180.1 |
C6' |
C1' |
C2' |
C3' |
359.9 |
360.0 |
C6' |
C1' |
C2' |
H2' |
179.8 |
179.9 |
C6' |
C1' |
C7' |
N1' |
2.1 |
150.0 |
C6' |
C1' |
C7' |
N2' |
181.9 |
330.1 |
C4' |
C5' |
C6' |
C1' |
359.6 |
360.0 |
C1' |
C6' |
C5' |
N4' |
179.9 |
179.9 |
C5' |
C6' |
C1' |
H6' |
180.6 |
180.0 |
C2' |
C1' |
C7' |
C6' |
180.2 |
179.9 |
C7' |
C1' |
C2' |
C3' |
179.7 |
180.1 |
C7' |
C1' |
C2' |
H2' |
359.6 |
360.0 |
C7' |
C1' |
C6' |
C5' |
180.6 |
180.0 |
C7' |
C1' |
C6' |
H6' |
0.0 |
359.9 |
N1' |
C7' |
C1' |
N2' |
180.2 |
179.9 |
C1' |
C7' |
N1' |
H1'1 |
358.6 |
0.1 |
C1' |
C7' |
N1' |
H1'2 |
179.6 |
180.0 |
C1' |
C7' |
N2' |
H2'1 |
8.6 |
180.0 |
C1' |
C7' |
N2' |
H2'2 |
172.2 |
359.9 |
C3' |
C2' |
C1' |
C6' |
359.9 |
360.0 |
C3' |
C2' |
C1' |
C7' |
179.7 |
180.1 |
C1' |
C2' |
C3' |
H2' |
179.9 |
179.9 |
C4' |
C3' |
C2' |
H3' |
179.9 |
180.1 |
C2' |
C3' |
C4' |
C5' |
0.0 |
0.1 |
C2' |
C3' |
C4' |
N3' |
180.0 |
180.4 |
H2' |
C2' |
C1' |
C6' |
179.8 |
179.9 |
H2' |
C2' |
C1' |
C7' |
359.6 |
360.0 |
C1' |
C2' |
H2' |
C3' |
180.1 |
180.1 |
H2' |
C2' |
C3' |
C4' |
180.0 |
180.1 |
H2' |
C2' |
C3' |
H3' |
0.1 |
360.0 |
C4' |
C3' |
C2' |
H2' |
180.0 |
180.1 |
C2' |
C3' |
C4' |
H3' |
180.1 |
179.9 |
C5' |
C4' |
C3' |
N3' |
180.0 |
179.6 |
C3' |
C4' |
C5' |
C6' |
0.3 |
360.0 |
C3' |
C4' |
C5' |
N4' |
180.0 |
180.0 |
C3' |
C4' |
N3' |
C8' |
179.7 |
180.1 |
H3' |
C3' |
C2' |
H2' |
0.1 |
360.0 |
C2' |
C3' |
H3' |
C4' |
179.9 |
180.1 |
H3' |
C3' |
C4' |
C5' |
179.9 |
180.1 |
H3' |
C3' |
C4' |
N3' |
359.9 |
0.5 |
C1' |
C6' |
C5' |
C4' |
359.6 |
360.0 |
C5' |
C4' |
C3' |
H3' |
179.9 |
180.1 |
C3' |
C4' |
C5' |
N3' |
180.0 |
180.3 |
C5' |
C4' |
N3' |
C8' |
359.6 |
0.4 |
C6' |
C5' |
C4' |
N4' |
180.2 |
180.0 |
C4' |
C5' |
C6' |
H6' |
180.1 |
180.0 |
C4' |
C5' |
N4' |
C8' |
0.3 |
360.0 |
C4' |
C5' |
N4' |
HN4' |
180.3 |
180.0 |
C9 |
C8' |
N3' |
C4' |
179.9 |
179.8 |
N3' |
C4' |
C3' |
H3' |
359.9 |
0.5 |
C3' |
C4' |
N3' |
C5' |
180.0 |
179.7 |
N3' |
C4' |
C5' |
C6' |
180.3 |
179.7 |
N3' |
C4' |
C5' |
N4' |
0.0 |
359.7 |
C4' |
N3' |
C8' |
N4' |
0.5 |
359.6 |
C5' |
C6' |
C1' |
C7' |
180.6 |
180.0 |
C1' |
C6' |
C5' |
H6' |
179.5 |
180.0 |
C6' |
C5' |
C4' |
N3' |
180.3 |
179.7 |
C4' |
C5' |
C6' |
N4' |
179.7 |
180.1 |
C6' |
C5' |
N4' |
C8' |
180.0 |
180.1 |
C6' |
C5' |
N4' |
HN4' |
0.0 |
0.1 |
C9 |
C8' |
N4' |
C5' |
180.2 |
180.0 |
N4' |
C5' |
C4' |
N3' |
0.0 |
359.7 |
C4' |
C5' |
N4' |
C6' |
180.3 |
179.9 |
N4' |
C5' |
C6' |
H6' |
0.4 |
359.9 |
N3' |
C8' |
N4' |
C5' |
359.5 |
0.3 |
C8' |
N4' |
C5' |
HN4' |
180.0 |
180.0 |
H6' |
C6' |
C1' |
C7' |
0.0 |
359.9 |
C1' |
C6' |
H6' |
C5' |
180.6 |
180.0 |
H6' |
C6' |
C5' |
N4' |
0.4 |
359.9 |
C1' |
C7' |
N1' |
N2' |
179.8 |
180.1 |
N1' |
C7' |
N2' |
H2'1 |
188.4 |
0.0 |
N1' |
C7' |
N2' |
H2'2 |
352.0 |
180.0 |
H1'1 |
N1' |
C7' |
H1'2 |
179.0 |
180.1 |
C1' |
C7' |
N2' |
N1' |
180.2 |
179.9 |
N2' |
C7' |
N1' |
H1'1 |
178.8 |
180.0 |
N2' |
C7' |
N1' |
H1'2 |
359.8 |
360.0 |
H2'1 |
N2' |
C7' |
H2'2 |
196.4 |
180.0 |
N3' |
C8' |
C9 |
O9 |
178.0 |
179.7 |
C9 |
C8' |
N3' |
N4' |
179.3 |
180.2 |
C5' |
N4' |
C8' |
N3' |
359.5 |
0.3 |
N3' |
C8' |
N4' |
HN4' |
179.5 |
180.2 |
N4' |
C8' |
C9 |
O9 |
357.2 |
359.9 |
C9 |
C8' |
N4' |
N3' |
180.7 |
179.8 |
C5' |
N4' |
C8' |
HN4' |
180.0 |
180.0 |
H1'1 |
N1' |
C7' |
N2' |
178.8 |
180.0 |
C7' |
N1' |
H1'1 |
H1'2 |
180.9 |
179.9 |
H1'2 |
N1' |
C7' |
N2' |
359.8 |
360.0 |
C7' |
N1' |
H1'2 |
H1'1 |
179.0 |
180.1 |
C7' |
N2' |
H2'1 |
H2'2 |
164.5 |
180.0 |
C7' |
N2' |
H2'2 |
H2'1 |
196.1 |
180.0 |
C5' |
N4' |
HN4' |
C8' |
180.0 |
180.0 |