PDB Chemical Component BAB
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for BAB
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
1.433 |
1.396 |
C1 |
C6 |
1.432 |
1.398 |
C1 |
C7 |
1.499 |
1.455 |
C2 |
C3 |
1.393 |
1.400 |
C2 |
H2 |
1.080 |
1.088 |
C3 |
C4 |
1.436 |
1.405 |
C3 |
H3 |
1.080 |
1.085 |
C4 |
C5 |
1.427 |
1.392 |
C4 |
N3 |
1.371 |
1.377 |
C5 |
C6 |
1.420 |
1.395 |
C5 |
N4 |
1.387 |
1.372 |
C6 |
H6 |
1.080 |
1.086 |
C7 |
N1 |
1.307 |
1.382 |
C7 |
N2 |
1.382 |
1.382 |
C8 |
C9 |
1.527 |
1.510 |
C8 |
N3 |
1.314 |
1.293 |
C8 |
N4 |
1.368 |
1.350 |
C9 |
C8' |
1.529 |
1.481 |
C9 |
H91 |
1.100 |
1.100 |
C9 |
H92 |
1.100 |
1.099 |
N2 |
HN21 |
1.000 |
1.015 |
N2 |
HN22 |
1.000 |
1.013 |
N4 |
HN4 |
1.000 |
1.011 |
C1' |
C2' |
1.436 |
1.411 |
C1' |
C6' |
1.423 |
1.398 |
C1' |
C7' |
1.498 |
1.455 |
C2' |
C3' |
1.396 |
1.398 |
C2' |
H2' |
1.080 |
1.089 |
C3' |
C4' |
1.436 |
1.374 |
C3' |
H3' |
1.080 |
1.084 |
C4' |
C5' |
1.429 |
1.415 |
C4' |
N3' |
1.358 |
1.401 |
C5' |
C6' |
1.413 |
1.375 |
C5' |
N4' |
1.392 |
1.400 |
C6' |
H6' |
1.080 |
1.085 |
C7' |
N1' |
1.311 |
1.382 |
C7' |
N2' |
1.377 |
1.383 |
C8' |
N3' |
1.312 |
1.388 |
C8' |
N4' |
1.369 |
1.388 |
N2' |
H2'1 |
1.000 |
1.014 |
N2' |
H2'2 |
1.000 |
1.014 |
N4' |
HN4' |
1.000 |
1.008 |
HN1 |
N1' |
1.000 |
1.014 |
HN3 |
N3' |
1.000 |
1.008 |
HN5 |
N1 |
1.000 |
1.014 |
HN6 |
N1 |
1.000 |
1.015 |
HN2 |
N1' |
1.000 |
1.015 |
Bond Angles for BAB
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
C6 |
119.5 |
121.3 |
C2 |
C1 |
C7 |
120.1 |
119.5 |
C1 |
C2 |
C3 |
120.5 |
121.0 |
C1 |
C2 |
H2 |
119.8 |
120.2 |
C6 |
C1 |
C7 |
120.3 |
119.3 |
C1 |
C6 |
C5 |
120.0 |
116.8 |
C1 |
C6 |
H6 |
120.0 |
121.9 |
C1 |
C7 |
N1 |
120.3 |
123.3 |
C1 |
C7 |
N2 |
120.4 |
123.3 |
C3 |
C2 |
H2 |
119.8 |
118.8 |
C2 |
C3 |
C4 |
120.5 |
118.5 |
C2 |
C3 |
H3 |
119.7 |
120.5 |
C4 |
C3 |
H3 |
119.7 |
121.0 |
C3 |
C4 |
C5 |
119.5 |
119.2 |
C3 |
C4 |
N3 |
134.0 |
130.0 |
C5 |
C4 |
N3 |
106.5 |
110.8 |
C4 |
C5 |
C6 |
120.0 |
123.3 |
C4 |
C5 |
N4 |
105.8 |
104.4 |
C4 |
N3 |
C8 |
109.9 |
103.8 |
C6 |
C5 |
N4 |
134.2 |
132.3 |
C5 |
C6 |
H6 |
120.0 |
121.4 |
C5 |
N4 |
C8 |
108.0 |
106.5 |
C5 |
N4 |
HN4 |
126.0 |
126.0 |
N1 |
C7 |
N2 |
119.3 |
113.4 |
C7 |
N2 |
HN21 |
125.6 |
121.7 |
C7 |
N2 |
HN22 |
108.8 |
121.9 |
C9 |
C8 |
N3 |
126.9 |
125.5 |
C9 |
C8 |
N4 |
123.4 |
120.0 |
C8 |
C9 |
C8' |
115.2 |
113.1 |
C8 |
C9 |
H91 |
106.3 |
108.9 |
C8 |
C9 |
H92 |
107.6 |
109.6 |
N3 |
C8 |
N4 |
109.8 |
114.5 |
C8 |
N4 |
HN4 |
126.0 |
127.5 |
C8' |
C9 |
H91 |
106.3 |
109.9 |
C8' |
C9 |
H92 |
107.6 |
109.7 |
C9 |
C8' |
N3' |
123.6 |
125.5 |
C9 |
C8' |
N4' |
126.6 |
125.3 |
H91 |
C9 |
H92 |
114.1 |
105.4 |
HN21 |
N2 |
HN22 |
125.6 |
116.4 |
C2' |
C1' |
C6' |
119.4 |
121.2 |
C2' |
C1' |
C7' |
120.4 |
119.3 |
C1' |
C2' |
C3' |
120.4 |
121.2 |
C1' |
C2' |
H2' |
119.8 |
119.9 |
C6' |
C1' |
C7' |
120.2 |
119.5 |
C1' |
C6' |
C5' |
120.6 |
117.2 |
C1' |
C6' |
H6' |
119.7 |
121.6 |
C1' |
C7' |
N1' |
120.4 |
123.3 |
C1' |
C7' |
N2' |
120.3 |
123.3 |
C3' |
C2' |
H2' |
119.8 |
118.9 |
C2' |
C3' |
C4' |
120.1 |
117.1 |
C2' |
C3' |
H3' |
119.9 |
121.0 |
C4' |
C3' |
H3' |
119.9 |
121.9 |
C3' |
C4' |
C5' |
119.8 |
121.7 |
C3' |
C4' |
N3' |
134.0 |
130.7 |
C5' |
C4' |
N3' |
106.2 |
107.6 |
C4' |
C5' |
C6' |
119.6 |
121.6 |
C4' |
C5' |
N4' |
106.0 |
107.7 |
C4' |
N3' |
C8' |
110.6 |
107.8 |
C6' |
C5' |
N4' |
134.4 |
130.7 |
C5' |
C6' |
H6' |
119.7 |
121.2 |
C5' |
N4' |
C8' |
107.3 |
107.8 |
C5' |
N4' |
HN4' |
126.3 |
124.6 |
N1' |
C7' |
N2' |
119.3 |
113.4 |
C7' |
N2' |
H2'1 |
125.6 |
121.7 |
C7' |
N2' |
H2'2 |
108.9 |
121.9 |
N3' |
C8' |
N4' |
109.8 |
109.2 |
C8' |
N4' |
HN4' |
126.4 |
127.6 |
H2'1 |
N2' |
H2'2 |
125.5 |
116.4 |
Torsion Angles for BAB
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C6 |
C1 |
C2 |
C7 |
180.0 |
180.1 |
C2 |
C1 |
C6 |
C5 |
0.3 |
360.0 |
C2 |
C1 |
C6 |
H6 |
180.3 |
180.0 |
C2 |
C1 |
C7 |
N1 |
180.1 |
330.0 |
C2 |
C1 |
C7 |
N2 |
360.0 |
150.0 |
C3 |
C2 |
C1 |
H2 |
180.0 |
180.0 |
C1 |
C2 |
C3 |
C4 |
0.2 |
360.0 |
C1 |
C2 |
C3 |
H3 |
180.3 |
180.0 |
C2 |
C1 |
C6 |
C7 |
180.0 |
179.9 |
C6 |
C1 |
C2 |
C3 |
359.7 |
0.0 |
C6 |
C1 |
C2 |
H2 |
179.8 |
180.0 |
C6 |
C1 |
C7 |
N1 |
0.1 |
149.9 |
C6 |
C1 |
C7 |
N2 |
180.0 |
329.9 |
C4 |
C5 |
C6 |
C1 |
359.6 |
0.0 |
C1 |
C6 |
C5 |
N4 |
180.1 |
180.0 |
C5 |
C6 |
C1 |
H6 |
180.0 |
180.0 |
C2 |
C1 |
C7 |
C6 |
180.0 |
180.1 |
C7 |
C1 |
C2 |
C3 |
179.8 |
179.9 |
C7 |
C1 |
C2 |
H2 |
359.8 |
360.0 |
C7 |
C1 |
C6 |
C5 |
180.3 |
180.1 |
C7 |
C1 |
C6 |
H6 |
0.3 |
0.1 |
N1 |
C7 |
C1 |
N2 |
180.1 |
180.0 |
C1 |
C7 |
N2 |
HN21 |
180.1 |
179.7 |
C1 |
C7 |
N2 |
HN22 |
0.1 |
357.6 |
C3 |
C2 |
C1 |
C6 |
359.7 |
0.0 |
C3 |
C2 |
C1 |
C7 |
179.8 |
179.9 |
C1 |
C2 |
C3 |
H2 |
180.0 |
180.0 |
C4 |
C3 |
C2 |
H3 |
180.0 |
180.0 |
C2 |
C3 |
C4 |
C5 |
359.7 |
0.0 |
C2 |
C3 |
C4 |
N3 |
180.4 |
180.0 |
H2 |
C2 |
C1 |
C6 |
179.8 |
180.0 |
H2 |
C2 |
C1 |
C7 |
359.8 |
360.0 |
C1 |
C2 |
H2 |
C3 |
180.0 |
180.0 |
H2 |
C2 |
C3 |
C4 |
180.2 |
180.0 |
H2 |
C2 |
C3 |
H3 |
0.3 |
360.0 |
C4 |
C3 |
C2 |
H2 |
180.2 |
180.0 |
C2 |
C3 |
C4 |
H3 |
180.0 |
180.0 |
C5 |
C4 |
C3 |
N3 |
179.4 |
180.1 |
C3 |
C4 |
C5 |
C6 |
0.3 |
360.0 |
C3 |
C4 |
C5 |
N4 |
180.0 |
180.0 |
C3 |
C4 |
N3 |
C8 |
179.8 |
180.0 |
H3 |
C3 |
C2 |
H2 |
0.3 |
360.0 |
C2 |
C3 |
H3 |
C4 |
180.0 |
180.0 |
H3 |
C3 |
C4 |
C5 |
179.7 |
180.0 |
H3 |
C3 |
C4 |
N3 |
0.3 |
360.0 |
C1 |
C6 |
C5 |
C4 |
359.6 |
0.0 |
C5 |
C4 |
C3 |
H3 |
179.7 |
180.0 |
C3 |
C4 |
C5 |
N3 |
180.5 |
179.9 |
C5 |
C4 |
N3 |
C8 |
0.4 |
360.0 |
C6 |
C5 |
C4 |
N4 |
180.3 |
180.0 |
C4 |
C5 |
C6 |
H6 |
179.6 |
180.0 |
C4 |
C5 |
N4 |
C8 |
0.4 |
360.0 |
C4 |
C5 |
N4 |
HN4 |
180.4 |
179.9 |
N3 |
C4 |
C3 |
H3 |
0.3 |
360.0 |
C3 |
C4 |
N3 |
C5 |
179.4 |
180.1 |
N3 |
C4 |
C5 |
C6 |
179.9 |
180.0 |
N3 |
C4 |
C5 |
N4 |
359.5 |
0.0 |
C9 |
C8 |
N3 |
C4 |
180.1 |
180.1 |
C4 |
N3 |
C8 |
N4 |
359.9 |
0.0 |
C5 |
C6 |
C1 |
C7 |
180.3 |
180.1 |
C1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
C6 |
C5 |
C4 |
N3 |
179.9 |
180.0 |
C4 |
C5 |
C6 |
N4 |
179.6 |
180.0 |
C6 |
C5 |
N4 |
C8 |
180.0 |
180.0 |
C6 |
C5 |
N4 |
HN4 |
0.0 |
359.9 |
N4 |
C5 |
C4 |
N3 |
359.5 |
0.0 |
C4 |
C5 |
N4 |
C6 |
180.4 |
180.0 |
N4 |
C5 |
C6 |
H6 |
0.1 |
0.0 |
C9 |
C8 |
N4 |
C5 |
179.6 |
179.9 |
N3 |
C8 |
N4 |
C5 |
359.8 |
360.0 |
C8 |
N4 |
C5 |
HN4 |
180.0 |
180.1 |
H6 |
C6 |
C1 |
C7 |
0.3 |
0.1 |
C1 |
C6 |
H6 |
C5 |
180.0 |
180.0 |
H6 |
C6 |
C5 |
N4 |
0.1 |
0.0 |
C1 |
C7 |
N1 |
N2 |
179.9 |
180.0 |
N1 |
C7 |
N2 |
HN21 |
359.9 |
359.7 |
N1 |
C7 |
N2 |
HN22 |
180.0 |
177.6 |
C1 |
C7 |
N2 |
N1 |
180.1 |
180.0 |
HN21 |
N2 |
C7 |
HN22 |
180.0 |
182.0 |
C4 |
N3 |
C8 |
C9 |
180.1 |
180.1 |
C5 |
N4 |
C8 |
C9 |
179.6 |
179.9 |
N3 |
C8 |
C9 |
N4 |
179.7 |
179.9 |
C9 |
C8 |
N4 |
HN4 |
359.6 |
360.0 |
C8' |
C9 |
C8 |
H91 |
117.4 |
237.5 |
C8' |
C9 |
C8 |
H92 |
240.0 |
122.7 |
C8 |
C9 |
C8' |
N3' |
179.4 |
272.0 |
C8 |
C9 |
C8' |
N4' |
359.6 |
90.0 |
H91 |
C9 |
C8 |
H92 |
122.6 |
245.2 |
C5 |
N4 |
C8 |
N3 |
359.8 |
360.0 |
C9 |
C8 |
N3 |
N4 |
180.3 |
180.1 |
N3 |
C8 |
C9 |
C8' |
0.3 |
270.0 |
N3 |
C8 |
C9 |
H91 |
242.9 |
32.5 |
N3 |
C8 |
C9 |
H92 |
120.3 |
147.3 |
N3 |
C8 |
N4 |
HN4 |
179.8 |
180.0 |
C5 |
N4 |
C8 |
HN4 |
180.0 |
179.9 |
C9 |
C8 |
N4 |
N3 |
179.8 |
179.9 |
N4 |
C8 |
C9 |
C8' |
180.6 |
90.1 |
N4 |
C8 |
C9 |
H91 |
63.2 |
212.6 |
N4 |
C8 |
C9 |
H92 |
300.6 |
327.3 |
C8' |
C9 |
C8 |
N3 |
0.3 |
270.0 |
C8' |
C9 |
C8 |
N4 |
180.6 |
90.1 |
C8 |
C9 |
C8' |
H91 |
242.6 |
121.9 |
C8 |
C9 |
C8' |
H92 |
120.0 |
237.4 |
H91 |
C9 |
C8' |
H92 |
237.4 |
115.4 |
C4' |
N3' |
C8' |
C9 |
180.2 |
178.4 |
C5' |
N4' |
C8' |
C9 |
179.8 |
181.6 |
N3' |
C8' |
C9 |
N4' |
179.8 |
181.9 |
C9 |
C8' |
N4' |
HN4' |
359.8 |
1.0 |
H91 |
C9 |
C8 |
N3 |
242.9 |
32.5 |
H91 |
C9 |
C8 |
N4 |
63.2 |
212.6 |
C8 |
C9 |
H91 |
C8' |
123.2 |
235.6 |
C8 |
C9 |
H91 |
H92 |
241.6 |
117.5 |
C8' |
C9 |
H91 |
H92 |
118.4 |
241.8 |
H91 |
C9 |
C8' |
N3' |
296.8 |
150.1 |
H91 |
C9 |
C8' |
N4' |
117.0 |
328.1 |
H92 |
C9 |
C8 |
N3 |
120.3 |
147.3 |
H92 |
C9 |
C8 |
N4 |
300.6 |
327.3 |
C8 |
C9 |
H92 |
C8' |
235.3 |
124.7 |
C8 |
C9 |
H92 |
H91 |
117.6 |
243.0 |
C8' |
C9 |
H92 |
H91 |
242.3 |
118.3 |
H92 |
C9 |
C8' |
N3' |
59.4 |
34.6 |
H92 |
C9 |
C8' |
N4' |
239.6 |
212.7 |
C7 |
N2 |
HN21 |
HN22 |
180.0 |
178.1 |
C7 |
N2 |
HN22 |
HN21 |
180.0 |
181.9 |
C5 |
N4 |
HN4 |
C8 |
180.0 |
180.1 |
C6' |
C1' |
C2' |
C7' |
179.8 |
180.0 |
C2' |
C1' |
C6' |
C5' |
0.1 |
360.0 |
C2' |
C1' |
C6' |
H6' |
180.1 |
180.0 |
C2' |
C1' |
C7' |
N1' |
179.9 |
330.0 |
C2' |
C1' |
C7' |
N2' |
359.8 |
150.1 |
C3' |
C2' |
C1' |
H2' |
180.0 |
180.0 |
C1' |
C2' |
C3' |
C4' |
0.1 |
360.0 |
C1' |
C2' |
C3' |
H3' |
180.1 |
180.0 |
C2' |
C1' |
C6' |
C7' |
180.2 |
180.0 |
C6' |
C1' |
C2' |
C3' |
359.9 |
0.1 |
C6' |
C1' |
C2' |
H2' |
179.9 |
180.0 |
C6' |
C1' |
C7' |
N1' |
0.1 |
150.1 |
C6' |
C1' |
C7' |
N2' |
180.0 |
330.1 |
C4' |
C5' |
C6' |
C1' |
359.9 |
360.0 |
C1' |
C6' |
C5' |
N4' |
180.0 |
180.0 |
C5' |
C6' |
C1' |
H6' |
180.0 |
180.0 |
C2' |
C1' |
C7' |
C6' |
179.8 |
180.0 |
C7' |
C1' |
C2' |
C3' |
180.1 |
180.1 |
C7' |
C1' |
C2' |
H2' |
0.1 |
0.0 |
C7' |
C1' |
C6' |
C5' |
179.9 |
179.9 |
C7' |
C1' |
C6' |
H6' |
359.9 |
360.0 |
N1' |
C7' |
C1' |
N2' |
180.1 |
180.0 |
C1' |
C7' |
N2' |
H2'1 |
180.1 |
179.7 |
C1' |
C7' |
N2' |
H2'2 |
0.1 |
357.6 |
C3' |
C2' |
C1' |
C6' |
359.9 |
0.1 |
C3' |
C2' |
C1' |
C7' |
180.1 |
180.1 |
C1' |
C2' |
C3' |
H2' |
180.0 |
180.0 |
C4' |
C3' |
C2' |
H3' |
180.0 |
180.0 |
C2' |
C3' |
C4' |
C5' |
359.9 |
360.0 |
C2' |
C3' |
C4' |
N3' |
180.0 |
180.1 |
H2' |
C2' |
C1' |
C6' |
179.9 |
180.0 |
H2' |
C2' |
C1' |
C7' |
0.1 |
0.0 |
C1' |
C2' |
H2' |
C3' |
180.0 |
180.0 |
H2' |
C2' |
C3' |
C4' |
180.1 |
180.0 |
H2' |
C2' |
C3' |
H3' |
0.1 |
0.0 |
C4' |
C3' |
C2' |
H2' |
180.1 |
180.0 |
C2' |
C3' |
C4' |
H3' |
180.0 |
180.0 |
C5' |
C4' |
C3' |
N3' |
179.9 |
179.9 |
C3' |
C4' |
C5' |
C6' |
0.1 |
0.0 |
C3' |
C4' |
C5' |
N4' |
180.0 |
180.0 |
C3' |
C4' |
N3' |
C8' |
180.0 |
179.9 |
H3' |
C3' |
C2' |
H2' |
0.1 |
0.0 |
C2' |
C3' |
H3' |
C4' |
180.0 |
180.0 |
H3' |
C3' |
C4' |
C5' |
179.9 |
180.0 |
H3' |
C3' |
C4' |
N3' |
360.0 |
0.0 |
C1' |
C6' |
C5' |
C4' |
359.9 |
360.0 |
C5' |
C4' |
C3' |
H3' |
179.9 |
180.0 |
C3' |
C4' |
C5' |
N3' |
180.1 |
180.1 |
C5' |
C4' |
N3' |
C8' |
0.0 |
360.0 |
C6' |
C5' |
C4' |
N4' |
180.1 |
180.0 |
C4' |
C5' |
C6' |
H6' |
179.9 |
180.0 |
C4' |
C5' |
N4' |
C8' |
0.0 |
0.1 |
C4' |
C5' |
N4' |
HN4' |
180.0 |
180.6 |
C9 |
C8' |
N3' |
C4' |
180.2 |
178.4 |
N3' |
C4' |
C3' |
H3' |
360.0 |
0.0 |
C3' |
C4' |
N3' |
C5' |
179.9 |
179.9 |
N3' |
C4' |
C5' |
C6' |
180.0 |
180.0 |
N3' |
C4' |
C5' |
N4' |
360.0 |
360.0 |
C4' |
N3' |
C8' |
N4' |
360.0 |
0.1 |
C5' |
C6' |
C1' |
C7' |
179.9 |
179.9 |
C1' |
C6' |
C5' |
H6' |
180.0 |
180.0 |
C6' |
C5' |
C4' |
N3' |
180.0 |
180.0 |
C4' |
C5' |
C6' |
N4' |
179.9 |
180.0 |
C6' |
C5' |
N4' |
C8' |
179.9 |
180.1 |
C6' |
C5' |
N4' |
HN4' |
359.9 |
0.6 |
C9 |
C8' |
N4' |
C5' |
179.8 |
181.6 |
N4' |
C5' |
C4' |
N3' |
360.0 |
360.0 |
C4' |
C5' |
N4' |
C6' |
180.1 |
180.0 |
N4' |
C5' |
C6' |
H6' |
360.0 |
360.0 |
N3' |
C8' |
N4' |
C5' |
0.0 |
359.9 |
C8' |
N4' |
C5' |
HN4' |
180.0 |
179.4 |
H6' |
C6' |
C1' |
C7' |
359.9 |
360.0 |
C1' |
C6' |
H6' |
C5' |
180.0 |
180.0 |
H6' |
C6' |
C5' |
N4' |
360.0 |
360.0 |
C1' |
C7' |
N1' |
N2' |
179.9 |
180.0 |
N1' |
C7' |
N2' |
H2'1 |
360.0 |
359.7 |
N1' |
C7' |
N2' |
H2'2 |
180.0 |
177.6 |
C1' |
C7' |
N2' |
N1' |
180.1 |
180.0 |
H2'1 |
N2' |
C7' |
H2'2 |
180.0 |
182.1 |
N3' |
C8' |
C9 |
H91 |
296.8 |
150.1 |
N3' |
C8' |
C9 |
H92 |
59.4 |
34.6 |
C9 |
C8' |
N3' |
N4' |
180.2 |
178.3 |
C5' |
N4' |
C8' |
N3' |
0.0 |
359.9 |
N3' |
C8' |
N4' |
HN4' |
180.0 |
179.3 |
N4' |
C8' |
C9 |
H91 |
117.0 |
328.1 |
N4' |
C8' |
C9 |
H92 |
239.6 |
212.7 |
C9 |
C8' |
N4' |
N3' |
179.8 |
181.7 |
C5' |
N4' |
C8' |
HN4' |
180.0 |
180.6 |
C7' |
N2' |
H2'1 |
H2'2 |
180.0 |
178.0 |
C7' |
N2' |
H2'2 |
H2'1 |
180.0 |
182.0 |
C5' |
N4' |
HN4' |
C8' |
180.0 |
179.3 |