PDB Chemical Component B9H

Ideal Model

Chemical Description

Name 2'-methyl, 3-propyl, cytidine-5'-monophosphate
Formula C13 H24 N3 O8 P
Formal charge 0
Molecular weight 381.319 g/mol
Component type RNA linking
Nonstandard Parent Id C

Chemical features

Atom count 49
Chiral atom count 5
Chiral atoms C4 C1' C2' C3' C4'
Observed leaving atoms OP3
Bond count 50
Aromatic bond count 0

Chemical Identifiers

Systematic name (OpenEye OEToolkits) [(2~{R},3~{R},4~{R},5~{R})-5-(4-azanyl-2-oxidanylidene-3-propyl-4~{H}-pyrimidin-1-yl)-4-methoxy-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CCCN1[C@@H](N)C=CN([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2OC)C1=O
SMILES (CACTVS) CCCN1[CH](N)C=CN([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2OC)C1=O
Stereo SMILES (OpenEye) CCCN1C(C=CN(C1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)OC)N
InChI descriptor InChI=1S/C13H24N3O8P/c1-3-5-15-9(14)4-6-16(13(15)18)12-11(22-2)10(17)8(24-12)7-23-25(19,20)21/h4,6,8-12,17H,3,5,7,14H2,1-2H3,(H2,19,20,21)/t8-,9-,10-,11-,12-/m1/s1
InChIKey descriptor GQHNKIBEOWBMPQ-LZQZFOIKSA-N

Status Information

Last modified 2019-05-06
Created 2017-09-26
Release status REL
Model PDB code 6EK0
Processing site EBI