PDB Chemical Component B9D

Ideal Model

Chemical Description

Name 5-fluoro-alpha-L-idopyranose
Synonyms (2R,3R,4R,5S,6R)-6-fluoranyl-6-(hydroxymethyl)oxane-2,3,4,5-tetrol; 5-fluoro-alpha-L-idose; 5-fluoro-L-idose; 5-fluoro-idose
Formula C6 H11 F O6
Formal charge 0
Molecular weight 198.146 g/mol
Component type L-saccharide, alpha linking

Chemical features

Atom count 24
Chiral atom count 5
Chiral atoms C5 C4 C3 C2 C1
Observed leaving atoms O1 HO1 HO4 HO3 HO2
Bond count 24
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) (2R,3R,4R,5S,6R)-6-fluoro-6-(hydroxymethyl)tetrahydro-2H-pyran-2,3,4,5-tetrol (non-preferred name)
Systematic name (OpenEye OEToolkits) (2R,3R,4R,5S,6R)-6-fluoranyl-6-(hydroxymethyl)oxane-2,3,4,5-tetrol

Chemical Descriptors

Stereo SMILES (CACTVS) OC[C@]1(F)O[C@@H](O)[C@H](O)[C@@H](O)[C@@H]1O
SMILES (CACTVS) OC[C]1(F)O[CH](O)[CH](O)[CH](O)[CH]1O
Stereo SMILES (OpenEye) C([C@]1([C@H]([C@@H]([C@H]([C@@H](O1)O)O)O)O)F)O
InChI descriptor InChI=1S/C6H11FO6/c7-6(1-8)4(11)2(9)3(10)5(12)13-6/h2-5,8-12H,1H2/t2-,3-,4+,5-,6+/m1/s1
InChIKey descriptor YQZCKDSOGGIGPL-DVKNGEFBSA-N

Status Information

Last modified 2020-07-17
Created 2009-08-18
Release status REL
Model PDB code 3IJ7
Processing site RCSB