PDB Chemical Component B9D

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for B9D

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C5	O1	1.433	1.430
O1	HO1	0.950	0.967
C1	O5	1.464	1.430
O5	C5	1.468	1.428
C4	C5	1.540	1.531
C5	H5	1.100	1.090
F1	C1	1.367	1.399
C3	C4	1.537	1.532
C4	O4	1.417	1.428
C4	H4	1.100	1.091
O4	HO4	0.950	0.967
O3	C3	1.416	1.428
C2	C3	1.532	1.531
C3	H3	1.100	1.090
O3	HO3	0.950	0.967
O2	C2	1.444	1.429
C2	C1	1.551	1.531
C2	H2	1.100	1.090
O2	HO2	0.950	0.967
C6	C1	1.592	1.530
C6	O6	1.462	1.429
C6	H6	1.100	1.090
C6	H6A	1.100	1.090
O6	HO6	0.950	0.966

Bond Angles for B9D

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C5	O1	HO1	109.5	114.0
O5	C5	H5	108.9	109.5
C4	C5	H5	108.0	109.5
F1	C1	C2	109.8	109.5
C3	C4	H4	108.9	109.6
O4	C4	H4	110.5	109.5
C4	O4	HO4	109.5	114.1
O3	C3	H3	110.1	109.6
C2	C3	H3	108.5	109.5
O2	C2	C1	109.8	109.5
O2	C2	H2	109.4	109.5
C1	C2	H2	108.0	109.5
O6	C6	H6	108.5	109.5
O6	C6	H6A	108.6	109.5
C6	O6	HO6	109.5	114.0
H6	C6	H6A	109.5	109.5

Torsion Angles for B9D

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C1	O5	C5	H5	54.8	181.1
O5	C5	O1	HO1	180.0	300.1
C4	C5	O5	H5	242.5	240.0
C4	C5	O1	HO1	58.9	180.1
O5	C5	C4	H5	118.1	120.0
H5	C5	O1	HO1	300.5	60.1
O2	C2	C1	F1	62.7	177.7
F1	C1	C2	H2	303.4	57.6
C3	C4	C5	H5	301.8	182.4
O4	C4	C3	H4	121.8	120.2
C3	C4	O4	HO4	299.0	179.7
O4	C4	C5	H5	62.7	302.3
C3	C4	O4	H4	239.2	239.8
H4	C4	C5	H5	183.9	62.4
H4	C4	O4	HO4	59.8	299.9
HO4	O4	C4	H4	59.8	299.9
O3	C3	C4	H4	298.8	57.0
C2	C3	O3	H3	119.0	120.2
F1	C1	C2	C3	184.8	297.6
C2	C3	C4	H4	59.5	176.9
O3	C3	C2	H3	240.0	239.8
H3	C3	C4	H4	178.1	296.7
HO3	O3	C3	H3	299.8	60.2
F1	C1	C2	O2	62.7	177.7
O2	C2	C3	H3	60.0	303.1
C1	C2	O2	H2	241.6	239.9
C1	C2	C3	H3	298.1	183.2
O2	C2	C1	H2	119.3	120.1
H2	C2	C3	H3	179.6	63.2
O2	C2	H2	C1	240.5	239.9
HO2	O2	C2	C1	302.7	179.7
HO2	O2	C2	H2	61.1	299.8
C6	C1	C2	H2	188.1	297.6
H6	C6	O6	H6A	118.9	120.0
O6	C6	H6	H6A	241.7	239.9
H6	C6	O6	HO6	59.5	60.0
O6	C6	H6A	H6	118.3	120.0
H6A	C6	O6	HO6	300.5	300.0
HO6	O6	C6	H6	59.5	60.0
HO6	O6	C6	H6A	300.5	300.0