PDB Chemical Component B8T

Ideal Model

Chemical Description

Name 4-methyl, cytidine-5'-monophosphate
Formula C10 H16 N3 O8 P
Formal charge 0
Molecular weight 337.223 g/mol
Component type RNA linking
Nonstandard Parent Id C

Chemical features

Atom count 38
Chiral atom count 4
Chiral atoms C1' C2' C3' C4'
Observed leaving atoms OP3
Bond count 39
Aromatic bond count 0

Chemical Identifiers

Systematic name (OpenEye OEToolkits) [(2~{R},3~{S},4~{R},5~{R})-5-[4-(methylamino)-2-oxidanylidene-pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CNC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O
SMILES (CACTVS) CNC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O
Stereo SMILES (OpenEye) CNC1=NC(=O)N(C=C1)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O
InChI descriptor InChI=1S/C10H16N3O8P/c1-11-6-2-3-13(10(16)12-6)9-8(15)7(14)5(21-9)4-20-22(17,18)19/h2-3,5,7-9,14-15H,4H2,1H3,(H,11,12,16)(H2,17,18,19)/t5-,7-,8-,9-/m1/s1
InChIKey descriptor GTYSZZKMWYKWQR-ZOQUXTDFSA-N

Status Information

Last modified 2019-05-02
Created 2017-09-25
Release status REL
Model PDB code 6EK0
Processing site EBI