PDB Chemical Component B8T
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for B8T
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O2 |
C2 |
1.243 |
1.220 |
| O2' |
C2' |
1.414 |
1.429 |
| C2 |
N3 |
1.342 |
1.332 |
| C2 |
N1 |
1.395 |
1.346 |
| N3 |
C4 |
1.335 |
1.327 |
| C2' |
C1' |
1.529 |
1.545 |
| C2' |
C3' |
1.518 |
1.546 |
| C1' |
N1 |
1.478 |
1.465 |
| C1' |
O4' |
1.411 |
1.444 |
| N1 |
C6 |
1.329 |
1.362 |
| C4 |
N4 |
1.342 |
1.375 |
| C4 |
C5 |
1.374 |
1.409 |
| N4 |
C41 |
1.452 |
1.465 |
| O3' |
C3' |
1.409 |
1.428 |
| C3' |
C4' |
1.510 |
1.544 |
| O4' |
C4' |
1.447 |
1.445 |
| C6 |
C5 |
1.377 |
1.354 |
| C4' |
C5' |
1.506 |
1.531 |
| C5' |
O5' |
1.416 |
1.429 |
| O5' |
P |
1.584 |
1.610 |
| OP1 |
P |
1.502 |
1.480 |
| P |
OP2 |
1.501 |
1.610 |
| P |
OP3 |
1.601 |
1.610 |
| C5 |
H1 |
1.080 |
1.080 |
| C6 |
H2 |
1.080 |
1.080 |
| C1' |
H3 |
1.100 |
1.090 |
| C2' |
H4 |
1.100 |
1.089 |
| C3' |
H5 |
1.100 |
1.091 |
| C4' |
H6 |
1.100 |
1.090 |
| C41 |
H7 |
1.100 |
1.090 |
| C41 |
H8 |
1.100 |
1.090 |
| C41 |
H9 |
1.100 |
1.090 |
| C5' |
H10 |
1.100 |
1.090 |
| C5' |
H11 |
1.100 |
1.090 |
| N4 |
H12 |
1.000 |
0.970 |
| O2' |
H13 |
0.950 |
0.968 |
| O3' |
H14 |
0.950 |
0.967 |
| OP2 |
H15 |
0.949 |
0.966 |
| OP3 |
H16 |
0.950 |
0.967 |
Bond Angles for B8T
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O2' |
C2' |
H4 |
113.2 |
110.6 |
| C2 |
N3 |
C4 |
121.5 |
120.7 |
| C2 |
N1 |
C6 |
118.5 |
120.3 |
| N3 |
C4 |
N4 |
120.0 |
120.2 |
| N3 |
C4 |
C5 |
119.3 |
119.6 |
| C2' |
C1' |
O4' |
107.4 |
104.8 |
| C2' |
C1' |
H3 |
108.8 |
110.5 |
| C2' |
C3' |
C4' |
102.1 |
104.0 |
| C3' |
C2' |
H4 |
111.5 |
110.6 |
| C2' |
C3' |
H5 |
108.3 |
110.5 |
| C1' |
O4' |
C4' |
109.5 |
105.2 |
| O4' |
C1' |
H3 |
110.4 |
110.4 |
| N1 |
C6 |
C5 |
121.2 |
119.3 |
| N1 |
C6 |
H2 |
119.4 |
120.4 |
| C5 |
C4 |
N4 |
120.7 |
120.2 |
| C4 |
N4 |
C41 |
121.1 |
120.0 |
| C4 |
N4 |
H12 |
119.4 |
120.0 |
| C4 |
C5 |
H1 |
120.3 |
120.5 |
| N4 |
C41 |
H7 |
109.5 |
109.5 |
| N4 |
C41 |
H8 |
109.5 |
109.5 |
| N4 |
C41 |
H9 |
109.5 |
109.4 |
| O3' |
C3' |
H5 |
109.8 |
110.6 |
| C3' |
C4' |
C5' |
115.5 |
110.3 |
| C4' |
C3' |
H5 |
108.4 |
110.5 |
| C3' |
C4' |
H6 |
109.0 |
110.3 |
| O4' |
C4' |
H6 |
109.8 |
110.5 |
| C6 |
C5 |
H1 |
120.3 |
120.5 |
| C4' |
C5' |
O5' |
111.4 |
109.5 |
| C5' |
C4' |
H6 |
109.0 |
110.3 |
| C4' |
C5' |
H10 |
109.0 |
109.5 |
| C4' |
C5' |
H11 |
109.0 |
109.4 |
| C5' |
O5' |
P |
120.5 |
123.0 |
| O5' |
C5' |
H10 |
109.0 |
109.5 |
| O5' |
C5' |
H11 |
109.0 |
109.4 |
| O5' |
P |
OP1 |
107.0 |
109.5 |
| O5' |
P |
OP2 |
108.4 |
109.5 |
| O5' |
P |
OP3 |
103.7 |
109.5 |
| OP1 |
P |
OP2 |
121.2 |
109.4 |
| OP1 |
P |
OP3 |
107.6 |
109.4 |
| P |
OP2 |
H15 |
109.5 |
114.1 |
| P |
OP3 |
H16 |
109.5 |
114.1 |
| H7 |
C41 |
H8 |
109.5 |
109.5 |
| H7 |
C41 |
H9 |
109.4 |
109.5 |
| H8 |
C41 |
H9 |
109.5 |
109.4 |
| H10 |
C5' |
H11 |
109.5 |
109.5 |
Torsion Angles for B8T
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O2' |
C2' |
C1' |
O4' |
94.3 |
142.6 |
| O2' |
C2' |
C1' |
H3 |
334.8 |
23.7 |
| C3' |
C2' |
O2' |
H4 |
234.1 |
237.3 |
| O2' |
C2' |
C3' |
H5 |
168.3 |
122.8 |
| N3 |
C2 |
N1 |
C6 |
359.4 |
0.1 |
| C2 |
N3 |
C4 |
N4 |
180.2 |
180.0 |
| C2 |
N3 |
C4 |
C5 |
359.7 |
360.0 |
| C2 |
N1 |
C6 |
C5 |
0.6 |
360.0 |
| C2 |
N1 |
C6 |
H2 |
180.5 |
179.9 |
| C5 |
C4 |
N3 |
N4 |
179.5 |
179.9 |
| N3 |
C4 |
N4 |
C41 |
196.2 |
359.9 |
| N3 |
C4 |
N4 |
H12 |
16.2 |
180.0 |
| N3 |
C4 |
C5 |
H1 |
180.2 |
180.0 |
| C2' |
C1' |
O4' |
C4' |
357.0 |
319.5 |
| O4' |
C1' |
C2' |
H3 |
119.5 |
118.9 |
| O2' |
C2' |
C3' |
H4 |
126.8 |
122.7 |
| C3' |
C2' |
C1' |
O4' |
338.1 |
24.0 |
| C3' |
C2' |
C1' |
H3 |
218.5 |
265.1 |
| O3' |
C3' |
C2' |
H5 |
237.2 |
237.3 |
| C2' |
C3' |
C4' |
C5' |
199.7 |
217.2 |
| C4' |
C3' |
C2' |
H5 |
114.3 |
118.6 |
| C2' |
C3' |
C4' |
H6 |
76.7 |
95.0 |
| C1' |
N1 |
C6 |
H2 |
358.8 |
0.2 |
| C2' |
C1' |
O4' |
H3 |
241.5 |
241.0 |
| C1' |
O4' |
C4' |
H6 |
271.0 |
281.6 |
| N1 |
C6 |
C5 |
H1 |
179.7 |
180.0 |
| N3 |
C4 |
N4 |
C5 |
179.5 |
179.9 |
| N4 |
C4 |
C5 |
H1 |
359.7 |
360.0 |
| C4 |
N4 |
C41 |
H7 |
180.0 |
60.0 |
| C4 |
N4 |
C41 |
H8 |
300.0 |
180.0 |
| C4 |
N4 |
C41 |
H9 |
60.0 |
300.0 |
| N3 |
C4 |
C5 |
N4 |
180.5 |
180.1 |
| N1 |
C6 |
C5 |
C4 |
359.6 |
359.9 |
| C5 |
C4 |
N4 |
C41 |
16.7 |
180.0 |
| C5 |
C4 |
N4 |
H12 |
196.7 |
0.0 |
| C6 |
C5 |
C4 |
H1 |
180.0 |
180.0 |
| C4 |
N4 |
C41 |
H12 |
180.0 |
180.0 |
| H7 |
C41 |
N4 |
H8 |
240.0 |
240.0 |
| H7 |
C41 |
N4 |
H9 |
120.0 |
120.0 |
| H8 |
C41 |
N4 |
H9 |
240.0 |
240.0 |
| O3' |
C3' |
C2' |
H4 |
278.6 |
237.3 |
| C2' |
C3' |
O3' |
H5 |
122.0 |
122.6 |
| C4' |
C3' |
O3' |
H5 |
238.6 |
237.3 |
| O3' |
C3' |
C4' |
H6 |
313.0 |
336.4 |
| C4' |
C3' |
C2' |
H4 |
155.7 |
118.6 |
| C2' |
C3' |
C4' |
H5 |
245.8 |
241.4 |
| C1' |
O4' |
C4' |
C3' |
27.0 |
40.5 |
| O3' |
C3' |
C4' |
H5 |
122.1 |
122.8 |
| O4' |
C4' |
C3' |
H6 |
243.5 |
241.0 |
| C3' |
C4' |
C5' |
O5' |
36.5 |
185.0 |
| C5' |
C4' |
C3' |
H6 |
123.0 |
122.2 |
| C3' |
C4' |
C5' |
H10 |
156.8 |
305.0 |
| C3' |
C4' |
C5' |
H11 |
276.2 |
65.1 |
| C4' |
O4' |
C1' |
H3 |
115.5 |
78.4 |
| O4' |
C4' |
C3' |
H5 |
74.3 |
94.6 |
| C3' |
C4' |
O4' |
H6 |
115.9 |
118.9 |
| O4' |
C4' |
C5' |
O5' |
280.2 |
69.6 |
| C5' |
C4' |
O4' |
H6 |
239.8 |
237.7 |
| O4' |
C4' |
C5' |
H10 |
40.5 |
189.6 |
| O4' |
C4' |
C5' |
H11 |
159.9 |
309.7 |
| N1 |
C6 |
C5 |
H2 |
180.0 |
179.9 |
| C6 |
C5 |
C4 |
N4 |
179.7 |
180.0 |
| C4 |
C5 |
C6 |
H1 |
180.0 |
180.0 |
| C1' |
O4' |
C4' |
C5' |
150.8 |
159.3 |
| C5' |
C4' |
C3' |
H5 |
313.9 |
335.8 |
| C3' |
C4' |
C5' |
H6 |
237.0 |
237.8 |
| O4' |
C4' |
C5' |
H6 |
120.7 |
122.4 |
| C4' |
C5' |
O5' |
P |
151.0 |
180.0 |
| O5' |
C5' |
C4' |
H10 |
239.7 |
240.0 |
| O5' |
C5' |
C4' |
H11 |
120.3 |
119.9 |
| H10 |
C5' |
C4' |
H11 |
240.6 |
240.0 |
| O5' |
C5' |
C4' |
H6 |
159.5 |
307.2 |
| C4' |
C5' |
O5' |
H10 |
120.3 |
120.1 |
| C4' |
C5' |
O5' |
H11 |
239.7 |
240.1 |
| C5' |
O5' |
P |
OP1 |
212.9 |
55.0 |
| C5' |
O5' |
P |
OP2 |
80.7 |
175.0 |
| C5' |
O5' |
P |
OP3 |
326.5 |
295.0 |
| H10 |
C5' |
O5' |
H11 |
119.4 |
120.0 |
| P |
O5' |
C5' |
H10 |
30.7 |
60.0 |
| P |
O5' |
C5' |
H11 |
271.2 |
299.9 |
| OP1 |
P |
O5' |
OP2 |
132.2 |
240.0 |
| OP1 |
P |
O5' |
OP3 |
246.4 |
120.0 |
| O5' |
P |
OP2 |
H15 |
124.1 |
180.0 |
| O5' |
P |
OP3 |
H16 |
246.9 |
300.0 |
| O5' |
P |
OP1 |
OP2 |
235.2 |
120.1 |
| O5' |
P |
OP1 |
OP3 |
110.9 |
240.0 |
| OP1 |
P |
OP2 |
H15 |
360.0 |
300.0 |
| OP1 |
P |
OP3 |
H16 |
0.0 |
180.0 |
| O5' |
P |
OP2 |
OP1 |
124.1 |
240.0 |
| O5' |
P |
OP2 |
OP3 |
248.5 |
120.0 |
| OP1 |
P |
OP2 |
OP3 |
124.4 |
240.1 |
| O5' |
P |
OP3 |
OP1 |
246.9 |
120.0 |
| O5' |
P |
OP3 |
OP2 |
114.7 |
240.0 |
| OP1 |
P |
OP3 |
OP2 |
227.8 |
119.9 |
| OP3 |
P |
OP2 |
H15 |
235.6 |
60.0 |
| H1 |
C5 |
C4 |
N4 |
359.7 |
360.0 |
| N1 |
C6 |
H2 |
C5 |
180.0 |
180.1 |
| H2 |
C6 |
C5 |
H1 |
359.7 |
0.0 |
| C2' |
C1' |
H3 |
O4' |
117.6 |
115.5 |
| H3 |
C1' |
O4' |
C4' |
115.5 |
78.4 |
| H4 |
C2' |
C1' |
O4' |
219.4 |
265.3 |
| H4 |
C2' |
C1' |
H3 |
99.9 |
146.4 |
| H4 |
C2' |
C3' |
C4' |
155.7 |
118.6 |
| H4 |
C2' |
C3' |
H5 |
41.5 |
0.0 |
| C2' |
C3' |
H5 |
C4' |
110.0 |
114.6 |
| H5 |
C3' |
C2' |
H4 |
41.5 |
0.0 |
| H5 |
C3' |
C4' |
C5' |
313.9 |
335.8 |
| H5 |
C3' |
C4' |
H6 |
190.8 |
213.6 |
| C3' |
C4' |
H6 |
C5' |
126.8 |
122.2 |
| H6 |
C4' |
C3' |
H5 |
190.8 |
213.6 |
| H6 |
C4' |
C5' |
O5' |
159.5 |
307.2 |
| H6 |
C4' |
C5' |
H10 |
279.8 |
67.2 |
| H6 |
C4' |
C5' |
H11 |
39.2 |
187.3 |
| N4 |
C41 |
H7 |
H8 |
120.0 |
120.0 |
| N4 |
C41 |
H7 |
H9 |
240.0 |
240.0 |
| H8 |
C41 |
H7 |
H9 |
120.0 |
120.0 |
| N4 |
C41 |
H8 |
H7 |
239.9 |
240.0 |
| N4 |
C41 |
H8 |
H9 |
120.0 |
120.0 |
| H7 |
C41 |
H8 |
H9 |
240.0 |
240.0 |
| N4 |
C41 |
H9 |
H7 |
120.0 |
120.0 |
| N4 |
C41 |
H9 |
H8 |
240.0 |
240.0 |
| H7 |
C41 |
H9 |
H8 |
120.0 |
120.0 |
| C4' |
C5' |
H10 |
O5' |
238.2 |
240.0 |
| H10 |
C5' |
C4' |
H6 |
279.8 |
67.2 |
| C4' |
C5' |
H10 |
H11 |
119.1 |
120.0 |
| H10 |
C5' |
O5' |
P |
30.7 |
60.0 |
| O5' |
C5' |
H10 |
H11 |
240.9 |
240.0 |
| C4' |
C5' |
H11 |
O5' |
121.7 |
119.9 |
| H11 |
C5' |
C4' |
H6 |
39.2 |
187.3 |
| C4' |
C5' |
H11 |
H10 |
240.9 |
239.9 |
| H11 |
C5' |
O5' |
P |
271.2 |
299.9 |
| O5' |
C5' |
H11 |
H10 |
119.1 |
120.0 |
| C4 |
N4 |
H12 |
C41 |
180.0 |
180.0 |
| H12 |
N4 |
C41 |
H7 |
360.0 |
240.0 |
| H12 |
N4 |
C41 |
H8 |
120.0 |
0.0 |
| H12 |
N4 |
C41 |
H9 |
240.0 |
120.0 |
| H13 |
O2' |
C2' |
H4 |
56.0 |
57.3 |
| H14 |
O3' |
C3' |
H5 |
58.0 |
298.8 |