PDB Chemical Component B8Q
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for B8Q
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
OP1 |
P |
1.502 |
1.480 |
N4 |
C4 |
1.348 |
1.469 |
P |
OP2 |
1.501 |
1.609 |
P |
O5' |
1.586 |
1.610 |
C5 |
C4 |
1.380 |
1.514 |
C5 |
C6 |
1.383 |
1.320 |
C4 |
N3 |
1.397 |
1.472 |
C6 |
N1 |
1.334 |
1.386 |
O4' |
C1' |
1.413 |
1.444 |
O4' |
C4' |
1.447 |
1.437 |
N3 |
C31 |
1.463 |
1.466 |
N3 |
C2 |
1.399 |
1.348 |
C5' |
O5' |
1.415 |
1.429 |
C5' |
C4' |
1.502 |
1.530 |
N1 |
C2 |
1.408 |
1.340 |
N1 |
C1' |
1.482 |
1.464 |
C2 |
O2 |
1.245 |
1.216 |
C1' |
C2' |
1.526 |
1.550 |
C4' |
C3' |
1.511 |
1.541 |
C3' |
C2' |
1.519 |
1.549 |
C3' |
O3' |
1.413 |
1.429 |
C2' |
O2' |
1.416 |
1.429 |
C5 |
H1 |
1.080 |
1.080 |
C1' |
H2 |
1.100 |
1.090 |
C2' |
H3 |
1.100 |
1.089 |
C3' |
H4 |
1.100 |
1.089 |
C4 |
H5 |
1.100 |
1.090 |
C4' |
H6 |
1.100 |
1.090 |
C5' |
H7 |
1.100 |
1.090 |
C5' |
H8 |
1.100 |
1.090 |
C6 |
H9 |
1.080 |
1.080 |
C31 |
H10 |
1.100 |
1.091 |
C31 |
H11 |
1.100 |
1.090 |
C31 |
H12 |
1.100 |
1.090 |
N4 |
H13 |
1.001 |
1.009 |
N4 |
H14 |
1.000 |
1.009 |
O2' |
H16 |
0.950 |
0.967 |
O3' |
H17 |
0.950 |
0.968 |
OP2 |
H19 |
0.950 |
0.967 |
P |
OP3 |
1.603 |
1.610 |
OP3 |
H15 |
0.950 |
0.967 |
Bond Angles for B8Q
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
OP1 |
P |
OP2 |
120.4 |
109.5 |
OP1 |
P |
OP3 |
107.7 |
109.4 |
N4 |
C4 |
H5 |
90.1 |
107.7 |
P |
OP2 |
H19 |
109.5 |
114.1 |
C4 |
C5 |
C6 |
120.5 |
118.1 |
C5 |
C4 |
N3 |
119.3 |
117.2 |
C4 |
C5 |
H1 |
119.7 |
120.9 |
C5 |
C4 |
H5 |
90.1 |
107.9 |
C6 |
C5 |
H1 |
119.7 |
121.0 |
C5 |
C6 |
H9 |
119.2 |
119.3 |
C4 |
N3 |
C31 |
120.7 |
120.8 |
N3 |
C4 |
H5 |
90.1 |
108.4 |
O4' |
C1' |
H2 |
109.9 |
110.8 |
O4' |
C4' |
H6 |
109.9 |
110.0 |
N3 |
C31 |
H10 |
109.5 |
109.4 |
N3 |
C31 |
H11 |
109.5 |
109.4 |
N3 |
C31 |
H12 |
109.5 |
109.5 |
N3 |
C2 |
O2 |
118.9 |
119.1 |
O5' |
C5' |
H7 |
109.2 |
109.5 |
O5' |
C5' |
H8 |
109.2 |
109.5 |
C5' |
C4' |
H6 |
109.1 |
109.8 |
C2 |
N1 |
C1' |
118.9 |
118.3 |
N1 |
C2 |
O2 |
121.1 |
119.1 |
N1 |
C1' |
C2' |
112.5 |
110.6 |
N1 |
C1' |
H2 |
109.0 |
110.6 |
C1' |
C2' |
O2' |
107.6 |
110.9 |
C2' |
C1' |
H2 |
108.4 |
110.6 |
C1' |
C2' |
H3 |
111.7 |
110.9 |
C4' |
C3' |
O3' |
114.0 |
110.5 |
C4' |
C3' |
H4 |
108.2 |
110.6 |
C3' |
C2' |
O2' |
110.7 |
110.9 |
C3' |
C2' |
H3 |
111.8 |
110.9 |
O3' |
C3' |
H4 |
109.6 |
110.5 |
C3' |
O3' |
H17 |
109.5 |
114.0 |
O2' |
C2' |
H3 |
113.5 |
110.8 |
C2' |
O2' |
H16 |
109.5 |
114.1 |
H7 |
C5' |
H8 |
109.5 |
109.5 |
H10 |
C31 |
H11 |
109.5 |
109.5 |
H10 |
C31 |
H12 |
109.4 |
109.5 |
H11 |
C31 |
H12 |
109.5 |
109.5 |
H13 |
N4 |
H14 |
109.5 |
111.0 |
P |
OP3 |
H15 |
109.5 |
114.0 |
Torsion Angles for B8Q
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
OP1 |
P |
OP2 |
H19 |
360.0 |
300.0 |
OP1 |
P |
OP3 |
H15 |
360.0 |
180.0 |
N4 |
C4 |
C5 |
H1 |
359.7 |
58.7 |
C5 |
C4 |
N4 |
H5 |
269.9 |
243.7 |
N3 |
C4 |
N4 |
H5 |
90.1 |
116.6 |
OP1 |
P |
OP2 |
OP3 |
124.5 |
240.1 |
P |
O5' |
C5' |
H7 |
264.7 |
60.0 |
P |
O5' |
C5' |
H8 |
24.4 |
300.0 |
N4 |
C4 |
C5 |
H5 |
90.1 |
116.1 |
C6 |
C5 |
C4 |
H1 |
180.0 |
179.4 |
C4 |
C5 |
C6 |
H9 |
180.4 |
180.4 |
C5 |
C4 |
N3 |
C31 |
179.7 |
180.0 |
N3 |
C4 |
C5 |
H5 |
269.9 |
237.4 |
C6 |
C5 |
C4 |
N3 |
359.5 |
359.3 |
C4 |
C5 |
C6 |
H1 |
180.0 |
180.6 |
C6 |
C5 |
C4 |
H5 |
89.6 |
121.9 |
N4 |
C4 |
N3 |
H5 |
269.9 |
243.9 |
N3 |
C4 |
C5 |
C6 |
359.5 |
359.3 |
N3 |
C4 |
C5 |
H1 |
179.5 |
180.0 |
C5 |
C4 |
N3 |
H5 |
90.1 |
122.4 |
C4 |
N3 |
C31 |
H10 |
180.0 |
90.0 |
C4 |
N3 |
C31 |
H11 |
300.0 |
210.0 |
C4 |
N3 |
C31 |
H12 |
60.0 |
330.0 |
C4 |
N3 |
C2 |
O2 |
179.4 |
180.0 |
C6 |
N1 |
C2 |
O2 |
180.5 |
179.8 |
C6 |
N1 |
C1' |
H2 |
139.4 |
172.4 |
N1 |
C1' |
O4' |
H2 |
119.8 |
123.0 |
C2' |
C1' |
O4' |
H2 |
242.3 |
241.5 |
O4' |
C1' |
C2' |
H3 |
217.3 |
278.8 |
C4' |
O4' |
C1' |
H2 |
115.6 |
78.4 |
C5' |
C4' |
O4' |
H6 |
239.8 |
238.9 |
O4' |
C4' |
C3' |
H4 |
72.1 |
116.7 |
C31 |
N3 |
C4 |
H5 |
89.6 |
57.7 |
C31 |
N3 |
C2 |
O2 |
0.1 |
0.4 |
H10 |
C31 |
N3 |
H11 |
240.0 |
240.0 |
H10 |
C31 |
N3 |
H12 |
120.0 |
120.0 |
H11 |
C31 |
N3 |
H12 |
240.0 |
239.9 |
N1 |
C2 |
N3 |
O2 |
180.5 |
180.1 |
O5' |
C5' |
C4' |
H6 |
156.4 |
306.0 |
H7 |
C5' |
O5' |
H8 |
240.3 |
120.0 |
O4' |
C4' |
C5' |
H6 |
120.7 |
121.2 |
C5' |
C4' |
C3' |
O3' |
74.2 |
119.7 |
C5' |
C4' |
C3' |
H4 |
312.0 |
357.1 |
N3 |
C2 |
N1 |
O2 |
179.5 |
179.9 |
C2 |
N1 |
C1' |
C2' |
79.6 |
115.0 |
C2 |
N1 |
C1' |
H2 |
319.3 |
352.2 |
O4' |
C1' |
N1 |
H2 |
239.6 |
236.8 |
C1' |
N1 |
C2 |
O2 |
0.6 |
0.1 |
N1 |
C1' |
C2' |
O2' |
212.9 |
273.7 |
C2' |
C1' |
N1 |
H2 |
120.3 |
122.8 |
N1 |
C1' |
C2' |
H3 |
338.0 |
37.3 |
O2 |
C2 |
N1 |
C1' |
0.6 |
0.1 |
O4' |
C1' |
C2' |
H2 |
118.7 |
118.7 |
N1 |
C1' |
C2' |
H2 |
239.4 |
237.2 |
C3' |
C2' |
C1' |
O2' |
244.0 |
241.8 |
C3' |
C2' |
C1' |
H3 |
118.9 |
118.2 |
O2' |
C2' |
C1' |
H3 |
234.8 |
236.4 |
C1' |
C2' |
O2' |
H16 |
180.0 |
180.0 |
C4' |
C3' |
C2' |
O2' |
285.7 |
220.9 |
C4' |
C3' |
C2' |
H3 |
158.1 |
97.4 |
O3' |
C3' |
C4' |
H4 |
122.2 |
122.6 |
C4' |
C3' |
O3' |
H17 |
180.0 |
176.2 |
C1' |
C2' |
C3' |
O2' |
113.7 |
118.2 |
C3' |
C2' |
C1' |
H2 |
217.5 |
278.4 |
C1' |
C2' |
C3' |
H3 |
241.2 |
241.7 |
O2' |
C2' |
C3' |
H3 |
127.5 |
123.6 |
C3' |
C2' |
O2' |
H16 |
289.3 |
292.7 |
C4' |
C3' |
O3' |
H4 |
238.5 |
237.3 |
O3' |
C3' |
C2' |
O2' |
49.2 |
339.6 |
O3' |
C3' |
C2' |
H3 |
281.6 |
216.0 |
O2' |
C2' |
C1' |
H2 |
333.5 |
36.6 |
C1' |
C2' |
O2' |
H3 |
124.1 |
123.7 |
C3' |
C2' |
O2' |
H3 |
233.4 |
236.4 |
C4 |
C5 |
H1 |
C6 |
180.0 |
179.3 |
H1 |
C5 |
C4 |
N3 |
179.5 |
180.0 |
H1 |
C5 |
C4 |
H5 |
269.6 |
302.6 |
H1 |
C5 |
C6 |
H9 |
0.4 |
359.8 |
N1 |
C1' |
H2 |
C2' |
122.8 |
122.9 |
H2 |
C1' |
C2' |
O2' |
333.5 |
36.6 |
H2 |
C1' |
C2' |
H3 |
98.6 |
160.1 |
C1' |
C2' |
H3 |
O2' |
238.1 |
236.3 |
H3 |
C2' |
C1' |
H2 |
98.6 |
160.1 |
C3' |
C2' |
H3 |
O2' |
126.0 |
123.6 |
H3 |
C2' |
O2' |
H16 |
55.9 |
56.3 |
C4' |
C3' |
H4 |
O3' |
124.9 |
122.6 |
H4 |
C3' |
C2' |
O2' |
171.9 |
102.1 |
H4 |
C3' |
C2' |
H3 |
44.4 |
338.5 |
H4 |
C3' |
O3' |
H17 |
301.5 |
298.9 |
H5 |
C4 |
C5 |
C6 |
89.6 |
121.9 |
C5 |
C4 |
H5 |
N3 |
240.7 |
232.2 |
H5 |
C4 |
C5 |
H1 |
269.6 |
302.6 |
H5 |
C4 |
N3 |
C31 |
89.6 |
57.7 |
H6 |
C4' |
C3' |
O3' |
310.8 |
358.8 |
H6 |
C4' |
C3' |
H4 |
188.5 |
236.2 |
O5' |
C5' |
H7 |
H8 |
119.5 |
240.0 |
H7 |
C5' |
C4' |
H6 |
36.2 |
66.0 |
O5' |
C5' |
H8 |
H7 |
240.5 |
120.0 |
H8 |
C5' |
C4' |
H6 |
276.6 |
185.9 |
H9 |
C6 |
C5 |
H1 |
0.4 |
359.8 |
N3 |
C31 |
H10 |
H11 |
120.0 |
119.9 |
N3 |
C31 |
H10 |
H12 |
240.0 |
240.0 |
H11 |
C31 |
H10 |
H12 |
120.0 |
120.1 |
N3 |
C31 |
H11 |
H10 |
240.0 |
240.1 |
N3 |
C31 |
H11 |
H12 |
120.0 |
120.0 |
H10 |
C31 |
H11 |
H12 |
240.0 |
239.9 |
N3 |
C31 |
H12 |
H10 |
120.0 |
120.0 |
N3 |
C31 |
H12 |
H11 |
240.0 |
240.0 |
H10 |
C31 |
H12 |
H11 |
120.0 |
120.1 |
H13 |
N4 |
C4 |
H5 |
270.1 |
56.3 |
H14 |
N4 |
C4 |
H5 |
30.1 |
180.2 |
H16 |
O2' |
C2' |
H3 |
55.9 |
56.3 |
H17 |
O3' |
C3' |
H4 |
301.5 |
298.9 |
OP1 |
P |
OP3 |
OP2 |
228.2 |
120.0 |
OP3 |
P |
OP2 |
H19 |
235.4 |
60.0 |