PDB Chemical Component B8Q

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for B8Q

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
OP1 P 1.502 1.480
N4 C4 1.348 1.469
P OP2 1.501 1.609
P O5' 1.586 1.610
C5 C4 1.380 1.514
C5 C6 1.383 1.320
C4 N3 1.397 1.472
C6 N1 1.334 1.386
O4' C1' 1.413 1.444
O4' C4' 1.447 1.437
N3 C31 1.463 1.466
N3 C2 1.399 1.348
C5' O5' 1.415 1.429
C5' C4' 1.502 1.530
N1 C2 1.408 1.340
N1 C1' 1.482 1.464
C2 O2 1.245 1.216
C1' C2' 1.526 1.550
C4' C3' 1.511 1.541
C3' C2' 1.519 1.549
C3' O3' 1.413 1.429
C2' O2' 1.416 1.429
C5 H1 1.080 1.080
C1' H2 1.100 1.090
C2' H3 1.100 1.089
C3' H4 1.100 1.089
C4 H5 1.100 1.090
C4' H6 1.100 1.090
C5' H7 1.100 1.090
C5' H8 1.100 1.090
C6 H9 1.080 1.080
C31 H10 1.100 1.091
C31 H11 1.100 1.090
C31 H12 1.100 1.090
N4 H13 1.001 1.009
N4 H14 1.000 1.009
O2' H16 0.950 0.967
O3' H17 0.950 0.968
OP2 H19 0.950 0.967
P OP3 1.603 1.610
OP3 H15 0.950 0.967

Bond Angles for B8Q

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 120.4 109.5
OP1 P OP3 107.7 109.4
N4 C4 H5 90.1 107.7
P OP2 H19 109.5 114.1
C4 C5 C6 120.5 118.1
C5 C4 N3 119.3 117.2
C4 C5 H1 119.7 120.9
C5 C4 H5 90.1 107.9
C6 C5 H1 119.7 121.0
C5 C6 H9 119.2 119.3
C4 N3 C31 120.7 120.8
N3 C4 H5 90.1 108.4
O4' C1' H2 109.9 110.8
O4' C4' H6 109.9 110.0
N3 C31 H10 109.5 109.4
N3 C31 H11 109.5 109.4
N3 C31 H12 109.5 109.5
N3 C2 O2 118.9 119.1
O5' C5' H7 109.2 109.5
O5' C5' H8 109.2 109.5
C5' C4' H6 109.1 109.8
C2 N1 C1' 118.9 118.3
N1 C2 O2 121.1 119.1
N1 C1' C2' 112.5 110.6
N1 C1' H2 109.0 110.6
C1' C2' O2' 107.6 110.9
C2' C1' H2 108.4 110.6
C1' C2' H3 111.7 110.9
C4' C3' O3' 114.0 110.5
C4' C3' H4 108.2 110.6
C3' C2' O2' 110.7 110.9
C3' C2' H3 111.8 110.9
O3' C3' H4 109.6 110.5
C3' O3' H17 109.5 114.0
O2' C2' H3 113.5 110.8
C2' O2' H16 109.5 114.1
H7 C5' H8 109.5 109.5
H10 C31 H11 109.5 109.5
H10 C31 H12 109.4 109.5
H11 C31 H12 109.5 109.5
H13 N4 H14 109.5 111.0
P OP3 H15 109.5 114.0

Torsion Angles for B8Q

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 H19 360.0 300.0
OP1 P OP3 H15 360.0 180.0
N4 C4 C5 H1 359.7 58.7
C5 C4 N4 H5 269.9 243.7
N3 C4 N4 H5 90.1 116.6
OP1 P OP2 OP3 124.5 240.1
P O5' C5' H7 264.7 60.0
P O5' C5' H8 24.4 300.0
N4 C4 C5 H5 90.1 116.1
C6 C5 C4 H1 180.0 179.4
C4 C5 C6 H9 180.4 180.4
C5 C4 N3 C31 179.7 180.0
N3 C4 C5 H5 269.9 237.4
C6 C5 C4 N3 359.5 359.3
C4 C5 C6 H1 180.0 180.6
C6 C5 C4 H5 89.6 121.9
N4 C4 N3 H5 269.9 243.9
N3 C4 C5 C6 359.5 359.3
N3 C4 C5 H1 179.5 180.0
C5 C4 N3 H5 90.1 122.4
C4 N3 C31 H10 180.0 90.0
C4 N3 C31 H11 300.0 210.0
C4 N3 C31 H12 60.0 330.0
C4 N3 C2 O2 179.4 180.0
C6 N1 C2 O2 180.5 179.8
C6 N1 C1' H2 139.4 172.4
N1 C1' O4' H2 119.8 123.0
C2' C1' O4' H2 242.3 241.5
O4' C1' C2' H3 217.3 278.8
C4' O4' C1' H2 115.6 78.4
C5' C4' O4' H6 239.8 238.9
O4' C4' C3' H4 72.1 116.7
C31 N3 C4 H5 89.6 57.7
C31 N3 C2 O2 0.1 0.4
H10 C31 N3 H11 240.0 240.0
H10 C31 N3 H12 120.0 120.0
H11 C31 N3 H12 240.0 239.9
N1 C2 N3 O2 180.5 180.1
O5' C5' C4' H6 156.4 306.0
H7 C5' O5' H8 240.3 120.0
O4' C4' C5' H6 120.7 121.2
C5' C4' C3' O3' 74.2 119.7
C5' C4' C3' H4 312.0 357.1
N3 C2 N1 O2 179.5 179.9
C2 N1 C1' C2' 79.6 115.0
C2 N1 C1' H2 319.3 352.2
O4' C1' N1 H2 239.6 236.8
C1' N1 C2 O2 0.6 0.1
N1 C1' C2' O2' 212.9 273.7
C2' C1' N1 H2 120.3 122.8
N1 C1' C2' H3 338.0 37.3
O2 C2 N1 C1' 0.6 0.1
O4' C1' C2' H2 118.7 118.7
N1 C1' C2' H2 239.4 237.2
C3' C2' C1' O2' 244.0 241.8
C3' C2' C1' H3 118.9 118.2
O2' C2' C1' H3 234.8 236.4
C1' C2' O2' H16 180.0 180.0
C4' C3' C2' O2' 285.7 220.9
C4' C3' C2' H3 158.1 97.4
O3' C3' C4' H4 122.2 122.6
C4' C3' O3' H17 180.0 176.2
C1' C2' C3' O2' 113.7 118.2
C3' C2' C1' H2 217.5 278.4
C1' C2' C3' H3 241.2 241.7
O2' C2' C3' H3 127.5 123.6
C3' C2' O2' H16 289.3 292.7
C4' C3' O3' H4 238.5 237.3
O3' C3' C2' O2' 49.2 339.6
O3' C3' C2' H3 281.6 216.0
O2' C2' C1' H2 333.5 36.6
C1' C2' O2' H3 124.1 123.7
C3' C2' O2' H3 233.4 236.4
C4 C5 H1 C6 180.0 179.3
H1 C5 C4 N3 179.5 180.0
H1 C5 C4 H5 269.6 302.6
H1 C5 C6 H9 0.4 359.8
N1 C1' H2 C2' 122.8 122.9
H2 C1' C2' O2' 333.5 36.6
H2 C1' C2' H3 98.6 160.1
C1' C2' H3 O2' 238.1 236.3
H3 C2' C1' H2 98.6 160.1
C3' C2' H3 O2' 126.0 123.6
H3 C2' O2' H16 55.9 56.3
C4' C3' H4 O3' 124.9 122.6
H4 C3' C2' O2' 171.9 102.1
H4 C3' C2' H3 44.4 338.5
H4 C3' O3' H17 301.5 298.9
H5 C4 C5 C6 89.6 121.9
C5 C4 H5 N3 240.7 232.2
H5 C4 C5 H1 269.6 302.6
H5 C4 N3 C31 89.6 57.7
H6 C4' C3' O3' 310.8 358.8
H6 C4' C3' H4 188.5 236.2
O5' C5' H7 H8 119.5 240.0
H7 C5' C4' H6 36.2 66.0
O5' C5' H8 H7 240.5 120.0
H8 C5' C4' H6 276.6 185.9
H9 C6 C5 H1 0.4 359.8
N3 C31 H10 H11 120.0 119.9
N3 C31 H10 H12 240.0 240.0
H11 C31 H10 H12 120.0 120.1
N3 C31 H11 H10 240.0 240.1
N3 C31 H11 H12 120.0 120.0
H10 C31 H11 H12 240.0 239.9
N3 C31 H12 H10 120.0 120.0
N3 C31 H12 H11 240.0 240.0
H10 C31 H12 H11 120.0 120.1
H13 N4 C4 H5 270.1 56.3
H14 N4 C4 H5 30.1 180.2
H16 O2' C2' H3 55.9 56.3
H17 O3' C3' H4 301.5 298.9
OP1 P OP3 OP2 228.2 120.0
OP3 P OP2 H19 235.4 60.0