PDB Chemical Component B8N

Ideal Model

Chemical Description

Name (2~{R})-2-azanyl-4-[5-[(2~{S},3~{R},4~{S},5~{R})-3,4-bis(oxidanyl)-5-(phosphonooxymethyl)oxolan-2-yl]-3-methyl-2,6-bis(oxidanylidene)pyrimidin-1-yl]butanoic acid
Formula C14 H22 N3 O11 P
Formal charge 0
Molecular weight 439.312 g/mol
Component type RNA linking

Chemical features

Atom count 51
Chiral atom count 5
Chiral atoms C4' C3' C2' C1' C33
Observed leaving atoms OP3
Bond count 52
Aromatic bond count 0

Chemical Identifiers

Systematic name (OpenEye OEToolkits) (2~{R})-2-azanyl-4-[5-[(2~{S},3~{R},4~{S},5~{R})-3,4-bis(oxidanyl)-5-(phosphonooxymethyl)oxolan-2-yl]-3-methyl-2,6-bis(oxidanylidene)pyrimidin-1-yl]butanoic acid

Chemical Descriptors

Stereo SMILES (CACTVS) CN1C=C([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O)C(=O)N(CC[C@@H](N)C(O)=O)C1=O
SMILES (CACTVS) CN1C=C([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O)C(=O)N(CC[CH](N)C(O)=O)C1=O
Stereo SMILES (OpenEye) CN1C=C(C(=O)N(C1=O)CC[C@H](C(=O)O)N)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O
InChI descriptor InChI=1S/C14H22N3O11P/c1-16-4-6(12(20)17(14(16)23)3-2-7(15)13(21)22)11-10(19)9(18)8(28-11)5-27-29(24,25)26/h4,7-11,18-19H,2-3,5,15H2,1H3,(H,21,22)(H2,24,25,26)/t7-,8-,9-,10-,11+/m1/s1
InChIKey descriptor BVRIEBGMUPJSJF-ILAIQSSSSA-N

Status Information

Last modified 2018-01-19
Created 2017-09-25
Release status REL
Model PDB code 6EK0
Processing site EBI